Wall clock time and date at job start Tue Mar 31 2020 16:27:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34793 * 117.00170 * 2 1 4 4 O 1.21534 * 119.99887 * 359.97438 * 3 2 1 5 5 C 1.46957 * 120.00409 * 180.02562 * 3 2 1 6 6 C 1.50702 * 119.99633 * 263.26041 * 5 3 2 7 7 C 1.33075 * 119.99926 * 83.25283 * 5 3 2 8 8 C 1.50698 * 120.00301 * 354.94796 * 7 5 3 9 9 N 1.46499 * 109.47537 * 124.90572 * 8 7 5 10 10 C 1.34774 * 119.99938 * 179.97438 * 9 8 7 11 11 O 1.21583 * 120.00410 * 0.02562 * 10 9 8 12 12 N 1.34779 * 120.00067 * 179.97438 * 10 9 8 13 13 C 1.39947 * 120.00428 * 184.73630 * 12 10 9 14 14 C 1.38864 * 120.06447 * 324.58317 * 13 12 10 15 15 C 1.38120 * 119.92228 * 179.72032 * 14 13 12 16 16 C 1.38277 * 120.07445 * 0.55059 * 15 14 13 17 17 C 1.50692 * 119.93348 * 179.70050 * 16 15 14 18 18 C 1.50703 * 109.47461 * 270.02335 * 17 16 15 19 19 H 1.08001 * 119.99323 * 0.02562 * 18 17 16 20 20 C 1.37871 * 120.00311 * 179.97438 * 18 17 16 21 21 N 1.31512 * 119.99987 * 180.02562 * 20 18 17 22 22 Si 1.86801 * 120.00107 * 359.97438 * 20 18 17 23 23 H 1.48505 * 109.46936 * 90.00021 * 22 20 18 24 24 H 1.48494 * 109.47401 * 210.00050 * 22 20 18 25 25 H 1.48502 * 109.47112 * 330.00319 * 22 20 18 26 26 C 1.38286 * 120.13772 * 359.72429 * 16 15 14 27 27 C 1.38113 * 120.06806 * 359.97438 * 26 16 15 28 28 H 1.09003 * 109.47073 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.46886 * 300.00015 * 1 2 3 30 30 H 1.08999 * 109.46954 * 59.99829 * 1 2 3 31 31 H 1.08998 * 109.47142 * 269.99401 * 6 5 3 32 32 H 1.09004 * 109.47296 * 29.99406 * 6 5 3 33 33 H 1.09002 * 109.46949 * 149.99543 * 6 5 3 34 34 H 1.07999 * 119.99873 * 174.93894 * 7 5 3 35 35 H 1.08993 * 109.47244 * 4.90034 * 8 7 5 36 36 H 1.09001 * 109.46860 * 244.90421 * 8 7 5 37 37 H 0.96997 * 119.99683 * 0.02562 * 9 8 7 38 38 H 0.97001 * 119.99823 * 5.00719 * 12 10 9 39 39 H 1.08002 * 120.04049 * 359.97245 * 14 13 12 40 40 H 1.08005 * 119.96222 * 180.25568 * 15 14 13 41 41 H 1.09007 * 109.47262 * 30.02563 * 17 16 15 42 42 H 1.08998 * 109.47668 * 150.01892 * 17 16 15 43 43 H 0.97005 * 119.99852 * 179.97438 * 21 20 18 44 44 H 1.07997 * 119.96260 * 180.02562 * 26 16 15 45 45 H 1.08002 * 120.03060 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0640 1.2010 0.0000 4 8 1.4021 2.2203 -0.0005 5 6 3.5316 1.2780 -0.0006 6 6 4.2764 1.4701 1.2953 7 6 4.2026 1.1778 -1.1453 8 6 3.4681 0.8721 -2.4252 9 7 3.7680 1.9055 -3.4193 10 6 3.2184 1.8382 -4.6481 11 8 2.4734 0.9201 -4.9314 12 7 3.4939 2.7892 -5.5625 13 6 2.8474 2.7748 -6.8036 14 6 2.5426 1.5660 -7.4153 15 6 1.8993 1.5552 -8.6375 16 6 1.5692 2.7463 -9.2574 17 6 0.8735 2.7308 -10.5940 18 6 1.9018 2.7330 -11.6957 19 1 2.9539 2.7440 -11.4522 20 6 1.4994 2.7198 -13.0143 21 7 2.3969 2.7212 -13.9757 22 14 -0.3203 2.6985 -13.4355 23 1 -0.8166 4.0929 -13.5567 24 1 -0.5222 1.9875 -14.7234 25 1 -1.0690 1.9984 -12.3609 26 6 1.8766 3.9518 -8.6535 27 6 2.5141 3.9693 -7.4284 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 4.4026 2.5356 1.4873 32 1 3.7105 1.0186 2.1102 33 1 5.2550 0.9951 1.2258 34 1 5.2737 1.3159 -1.1572 35 1 2.3954 0.8533 -2.2329 36 1 3.7864 -0.0993 -2.8036 37 1 4.3627 2.6377 -3.1934 38 1 4.1431 3.4814 -5.3619 39 1 2.8045 0.6353 -6.9339 40 1 1.6582 0.6153 -9.1119 41 1 0.2582 1.8345 -10.6730 42 1 0.2416 3.6143 -10.6851 43 1 2.1138 2.7115 -14.9034 44 1 1.6170 4.8804 -9.1400 45 1 2.7543 4.9111 -6.9576 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932560234.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:27:46 Heat of formation + Delta-G solvation = -96.354724 kcal Electronic energy + Delta-G solvation = -26815.838993 eV Core-core repulsion = 22797.944394 eV Total energy + Delta-G solvation = -4017.894599 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.82464 -41.53985 -39.83640 -37.83235 -37.23439 -36.24301 -35.18933 -34.79908 -32.56239 -31.76671 -30.22597 -28.97791 -28.52248 -25.82824 -24.75223 -24.12685 -23.79057 -22.39485 -21.64212 -20.62223 -19.67415 -18.95247 -18.69882 -18.41864 -17.82340 -16.99177 -16.81639 -16.74117 -16.38370 -15.93096 -15.81135 -15.68171 -15.11309 -14.84560 -14.80789 -14.39565 -14.29600 -14.22888 -14.12644 -13.91750 -13.63838 -13.50251 -13.46311 -13.20851 -13.01717 -12.67410 -12.53984 -12.19456 -11.98765 -11.93544 -11.75445 -11.67911 -11.66053 -11.33340 -10.95448 -10.77269 -10.50882 -10.14188 -9.75879 -8.82178 -8.28491 -6.33058 0.35894 0.48489 0.58094 0.89830 1.36863 1.39148 1.51187 1.56821 1.74753 1.99169 2.36430 2.98020 3.05571 3.15832 3.46364 3.66604 4.00288 4.04996 4.16076 4.18231 4.21588 4.32331 4.35410 4.43186 4.58412 4.60246 4.62172 4.64979 4.71405 4.78647 4.98900 5.05412 5.08352 5.09602 5.19035 5.24856 5.27068 5.39162 5.41109 5.44000 5.57331 5.64381 5.90279 6.01651 6.17595 6.30853 6.46738 6.72798 6.92423 7.30075 7.40546 8.87793 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.024319 B = 0.001904 C = 0.001837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.069206 B =14702.467523 C =15242.362768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.360 6.360 3 C 0.497 3.503 4 O -0.533 6.533 5 C -0.129 4.129 6 C -0.103 4.103 7 C -0.101 4.101 8 C 0.157 3.843 9 N -0.721 5.721 10 C 0.698 3.302 11 O -0.616 6.616 12 N -0.666 5.666 13 C 0.136 3.864 14 C -0.126 4.126 15 C -0.121 4.121 16 C -0.075 4.075 17 C 0.021 3.979 18 C -0.517 4.517 19 H 0.030 0.970 20 C 0.007 3.993 21 N -0.948 5.948 22 Si 0.950 3.050 23 H -0.262 1.262 24 H -0.283 1.283 25 H -0.250 1.250 26 C -0.113 4.113 27 C -0.130 4.130 28 H 0.132 0.868 29 H 0.069 0.931 30 H 0.051 0.949 31 H 0.087 0.913 32 H 0.069 0.931 33 H 0.110 0.890 34 H 0.187 0.813 35 H 0.037 0.963 36 H 0.091 0.909 37 H 0.419 0.581 38 H 0.425 0.575 39 H 0.126 0.874 40 H 0.114 0.886 41 H 0.026 0.974 42 H 0.033 0.967 43 H 0.267 0.733 44 H 0.132 0.868 45 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.181 -1.659 35.423 35.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.276 6.276 3 C 0.342 3.658 4 O -0.423 6.423 5 C -0.131 4.131 6 C -0.160 4.160 7 C -0.119 4.119 8 C 0.033 3.967 9 N -0.379 5.379 10 C 0.398 3.602 11 O -0.496 6.496 12 N -0.315 5.315 13 C 0.041 3.959 14 C -0.146 4.146 15 C -0.139 4.139 16 C -0.076 4.076 17 C -0.016 4.016 18 C -0.555 4.555 19 H 0.048 0.952 20 C -0.190 4.190 21 N -0.589 5.589 22 Si 0.773 3.227 23 H -0.187 1.187 24 H -0.209 1.209 25 H -0.173 1.173 26 C -0.131 4.131 27 C -0.151 4.151 28 H 0.150 0.850 29 H 0.088 0.912 30 H 0.070 0.930 31 H 0.106 0.894 32 H 0.088 0.912 33 H 0.129 0.871 34 H 0.204 0.796 35 H 0.055 0.945 36 H 0.109 0.891 37 H 0.256 0.744 38 H 0.264 0.736 39 H 0.144 0.856 40 H 0.132 0.868 41 H 0.044 0.956 42 H 0.052 0.948 43 H 0.076 0.924 44 H 0.150 0.850 45 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 4.312 -2.215 35.087 35.420 hybrid contribution -0.521 0.457 -0.810 1.066 sum 3.790 -1.758 34.277 34.530 Atomic orbital electron populations 1.23558 0.74962 1.05856 1.02354 1.86706 1.24867 1.32601 1.83392 1.22341 0.91223 0.81481 0.70757 1.90900 1.67677 1.37202 1.46555 1.21276 0.87188 1.04668 0.99960 1.20848 1.00534 1.04042 0.90551 1.23619 1.02137 0.96071 0.90105 1.20343 0.97941 0.92012 0.86404 1.44793 1.52421 1.30475 1.10182 1.16110 0.80546 0.82321 0.81202 1.90933 1.42159 1.36522 1.79942 1.42206 1.45170 1.31533 1.12631 1.17392 0.98980 0.93722 0.85797 1.21156 1.00861 0.98127 0.94450 1.20982 0.99892 0.97966 0.95088 1.20185 0.98083 0.93759 0.95554 1.18648 0.95220 0.97478 0.90288 1.21161 0.93126 1.50578 0.90649 0.95197 1.25968 1.02892 0.94076 0.96045 1.70056 1.36084 1.52406 1.00313 0.85662 0.79591 0.79425 0.78037 1.18705 1.20873 1.17348 1.21024 0.99246 0.97632 0.95212 1.21033 1.00660 0.97246 0.96123 0.84960 0.91187 0.93011 0.89428 0.91223 0.87103 0.79585 0.94455 0.89146 0.74358 0.73627 0.85576 0.86823 0.95595 0.94847 0.92391 0.85006 0.82406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.57 113.37 1.20 1.57 16 2 O -0.36 -6.51 10.48 -57.05 -0.60 -7.11 16 3 C 0.50 9.54 5.41 70.11 0.38 9.92 16 4 O -0.53 -13.90 16.90 19.72 0.33 -13.56 16 5 C -0.13 -1.42 5.87 -18.73 -0.11 -1.53 16 6 C -0.10 -0.46 10.03 71.24 0.71 0.26 16 7 C -0.10 -0.81 9.32 24.53 0.23 -0.58 16 8 C 0.16 2.50 5.95 85.63 0.51 3.01 16 9 N -0.72 -11.57 5.55 -482.32 -2.68 -14.25 16 10 C 0.70 17.96 8.41 179.05 1.51 19.47 16 11 O -0.62 -21.97 13.80 -3.98 -0.05 -22.03 16 12 N -0.67 -15.36 5.34 -317.18 -1.69 -17.05 16 13 C 0.14 4.30 6.29 38.14 0.24 4.54 16 14 C -0.13 -4.76 8.69 22.39 0.19 -4.57 16 15 C -0.12 -5.09 9.69 22.25 0.22 -4.88 16 16 C -0.08 -3.31 5.07 -19.85 -0.10 -3.41 16 17 C 0.02 1.03 4.17 29.10 0.12 1.15 16 18 C -0.52 -30.61 9.65 25.60 0.25 -30.36 16 19 H 0.03 1.97 7.98 -2.91 -0.02 1.94 16 20 C 0.01 0.42 5.47 84.65 0.46 0.89 16 21 N -0.95 -60.08 13.96 21.44 0.30 -59.78 16 22 Si 0.95 44.82 27.47 68.60 1.88 46.70 16 23 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 24 H -0.28 -13.08 7.11 99.48 0.71 -12.38 16 25 H -0.25 -11.11 6.54 99.48 0.65 -10.46 16 26 C -0.11 -4.21 9.69 22.25 0.22 -3.99 16 27 C -0.13 -3.95 9.97 22.39 0.22 -3.73 16 28 H 0.13 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.09 0.32 8.14 -2.39 -0.02 0.30 16 32 H 0.07 0.36 8.11 -2.39 -0.02 0.34 16 33 H 0.11 -0.09 8.07 -2.39 -0.02 -0.11 16 34 H 0.19 -0.03 8.06 -2.91 -0.02 -0.05 16 35 H 0.04 0.84 6.22 -2.39 -0.01 0.82 16 36 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.42 3.36 8.48 -92.71 -0.79 2.57 16 38 H 0.42 5.91 8.84 -92.71 -0.82 5.09 16 39 H 0.13 4.88 6.25 -2.91 -0.02 4.86 16 40 H 0.11 4.78 8.06 -2.91 -0.02 4.76 16 41 H 0.03 1.27 7.14 -2.38 -0.02 1.25 16 42 H 0.03 1.56 7.51 -2.39 -0.02 1.54 16 43 H 0.27 15.73 8.31 -92.70 -0.77 14.96 16 44 H 0.13 4.59 8.06 -2.91 -0.02 4.57 16 45 H 0.16 3.40 8.06 -2.91 -0.02 3.38 16 Total: -1.00 -85.78 388.34 3.10 -82.68 By element: Atomic # 1 Polarization: 17.28 SS G_CDS: -0.63 Total: 16.65 kcal Atomic # 6 Polarization: -18.50 SS G_CDS: 6.25 Total: -12.25 kcal Atomic # 7 Polarization: -87.01 SS G_CDS: -4.07 Total: -91.08 kcal Atomic # 8 Polarization: -42.38 SS G_CDS: -0.32 Total: -42.70 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 1.88 Total: 46.70 kcal Total: -85.78 3.10 -82.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932560234.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.676 kcal (2) G-P(sol) polarization free energy of solvation -85.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds