Wall clock time and date at job start Tue Mar 31 2020 17:20:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.32987 * 120.00128 * 2 1 4 4 C 1.47106 * 119.99753 * 172.96127 * 3 2 1 5 5 O 1.21612 * 120.00300 * 354.03476 * 4 3 2 6 6 N 1.34779 * 119.99927 * 174.03919 * 4 3 2 7 7 C 1.48144 * 127.84093 * 179.97438 * 6 4 3 8 8 C 1.54388 * 104.61997 * 219.60426 * 7 6 4 9 9 H 1.08997 * 110.34175 * 95.00168 * 8 7 6 10 10 C 1.52999 * 110.34138 * 217.25809 * 8 7 6 11 11 F 1.39907 * 109.46811 * 175.53629 * 10 8 7 12 12 F 1.39895 * 109.47258 * 295.53632 * 10 8 7 13 13 F 1.39897 * 109.46958 * 55.54253 * 10 8 7 14 14 C 1.54289 * 104.95903 * 336.13323 * 8 7 6 15 15 H 1.08996 * 110.42846 * 241.08339 * 14 8 7 16 16 N 1.46497 * 110.34307 * 118.87166 * 14 8 7 17 17 C 1.36934 * 120.00246 * 158.00709 * 16 14 8 18 18 H 1.08000 * 119.99439 * 0.02562 * 17 16 14 19 19 C 1.38810 * 120.00481 * 179.97438 * 17 16 14 20 20 N 1.31622 * 119.99485 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00067 * 180.27615 * 19 17 16 22 22 H 1.48497 * 109.46871 * 179.72768 * 21 19 17 23 23 H 1.48498 * 109.47141 * 299.72699 * 21 19 17 24 24 H 1.48498 * 109.47084 * 59.72639 * 21 19 17 25 25 C 1.48147 * 127.83822 * 359.96974 * 6 4 3 26 26 C 1.50700 * 119.99556 * 180.02562 * 2 1 3 27 27 C 1.52996 * 117.50201 * 1.64536 * 26 2 1 28 28 C 1.53000 * 117.49903 * 293.02016 * 26 2 1 29 29 H 1.08999 * 109.47236 * 89.99481 * 1 2 3 30 30 H 1.08997 * 109.47320 * 210.00221 * 1 2 3 31 31 H 1.09008 * 109.46962 * 330.00077 * 1 2 3 32 32 H 1.07997 * 120.00563 * 352.95812 * 3 2 1 33 33 H 1.09002 * 110.40644 * 338.38691 * 7 6 4 34 34 H 1.08995 * 110.40882 * 100.69913 * 7 6 4 35 35 H 0.96998 * 119.99914 * 338.00735 * 16 14 8 36 36 H 0.97005 * 119.99691 * 179.97438 * 20 19 17 37 37 H 1.09003 * 110.40864 * 21.61313 * 25 6 4 38 38 H 1.08999 * 110.50959 * 259.23170 * 25 6 4 39 39 H 1.09004 * 115.54975 * 147.35985 * 26 2 1 40 40 H 1.09000 * 117.49894 * 0.02562 * 27 26 2 41 41 H 1.08998 * 117.50241 * 145.02716 * 27 26 2 42 42 H 1.09000 * 117.50221 * 214.98079 * 28 26 2 43 43 H 1.08996 * 117.50123 * 0.02562 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1517 0.0000 4 6 3.6347 1.1564 0.1561 5 8 4.2243 0.1196 0.3935 6 7 4.3215 2.3099 0.0362 7 6 5.7836 2.5140 0.1593 8 6 5.9279 3.8488 0.9216 9 1 6.0480 3.6644 1.9892 10 6 7.1178 4.6441 0.3809 11 9 7.1708 5.8913 1.0127 12 9 8.3014 3.9426 0.6340 13 9 6.9691 4.8260 -0.9982 14 6 4.6103 4.6053 0.6530 15 1 4.8093 5.5443 0.1365 16 7 3.9020 4.8569 1.9104 17 6 2.9801 5.8666 1.9868 18 1 2.7750 6.4771 1.1199 19 6 2.3086 6.1047 3.1781 20 7 2.5584 5.3602 4.2344 21 14 1.0454 7.4770 3.2800 22 1 0.4704 7.5199 4.6485 23 1 1.6995 8.7753 2.9770 24 1 -0.0378 7.2269 2.2955 25 6 3.7855 3.6613 -0.2487 26 6 2.2604 -1.3052 -0.0006 27 6 1.4388 -2.5952 -0.0401 28 6 2.1539 -2.1829 1.2481 29 1 -0.3634 0.0001 -1.0276 30 1 -0.3634 -0.8899 0.5138 31 1 -0.3633 0.8901 0.5139 32 1 1.6382 2.0835 -0.1147 33 1 6.2344 1.7008 0.7282 34 1 6.2417 2.5862 -0.8271 35 1 4.0861 4.3083 2.6889 36 1 2.0893 5.5268 5.0670 37 1 2.7285 3.7138 0.0123 38 1 3.9300 3.9158 -1.2987 39 1 3.2126 -1.2981 -0.5310 40 1 0.3533 -2.4999 -0.0662 41 1 1.8503 -3.4371 -0.5967 42 1 3.0359 -2.7536 1.5389 43 1 1.5387 -1.8166 2.0698 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099217864.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:20:43 Heat of formation + Delta-G solvation = -124.025396 kcal Electronic energy + Delta-G solvation = -29682.921553 eV Core-core repulsion = 25121.970323 eV Total energy + Delta-G solvation = -4560.951230 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.145 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.90536 -47.41814 -47.31863 -39.92313 -38.33574 -36.99018 -34.04921 -33.34841 -31.98395 -30.62970 -28.16119 -27.60481 -25.68658 -24.30314 -23.16524 -22.32674 -22.13989 -20.38754 -19.92635 -18.31622 -18.26417 -17.99905 -17.64346 -16.92309 -16.68343 -15.89253 -15.21317 -15.15591 -14.63082 -14.42140 -14.22883 -13.99621 -13.81133 -13.72192 -13.60580 -13.51372 -13.48097 -13.31939 -13.14787 -13.06087 -12.80760 -12.33274 -12.05218 -11.82965 -11.67726 -11.52537 -11.31070 -11.20845 -10.92223 -10.89085 -10.85872 -10.71678 -10.29389 -10.23589 -9.87079 -9.38931 -9.13321 -8.84260 -8.40781 -7.17378 -5.91991 -3.24486 1.46476 2.84713 3.25825 3.35262 3.40717 3.41641 3.47307 3.99507 4.01915 4.10924 4.22386 4.47845 4.60036 4.73423 4.88663 4.94254 5.03313 5.11260 5.17633 5.26966 5.35215 5.44970 5.47384 5.50880 5.55898 5.59588 5.63486 5.74823 5.84735 5.92876 5.96245 6.05063 6.10272 6.14366 6.25466 6.32028 6.51614 6.55887 6.68159 7.54970 7.82247 8.23159 8.46066 9.35943 9.85509 10.20939 11.29414 Molecular weight = 332.15amu Principal moments of inertia in cm(-1) A = 0.008151 B = 0.004850 C = 0.003303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3434.245943 B = 5772.135842 C = 8475.174619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.013 4.013 3 C -0.208 4.208 4 C 0.573 3.427 5 O -0.547 6.547 6 N -0.609 5.609 7 C 0.118 3.882 8 C -0.165 4.165 9 H 0.128 0.872 10 C 0.464 3.536 11 F -0.173 7.173 12 F -0.187 7.187 13 F -0.184 7.184 14 C 0.179 3.821 15 H 0.076 0.924 16 N -0.709 5.709 17 C -0.254 4.254 18 H 0.074 0.926 19 C -0.003 4.003 20 N -0.926 5.926 21 Si 0.909 3.091 22 H -0.290 1.290 23 H -0.284 1.284 24 H -0.284 1.284 25 C 0.073 3.927 26 C -0.114 4.114 27 C -0.192 4.192 28 C -0.156 4.156 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.131 0.869 33 H 0.092 0.908 34 H 0.077 0.923 35 H 0.387 0.613 36 H 0.258 0.742 37 H 0.095 0.905 38 H 0.065 0.935 39 H 0.132 0.868 40 H 0.094 0.906 41 H 0.093 0.907 42 H 0.095 0.905 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.594 -9.353 -10.538 14.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.015 4.015 3 C -0.229 4.229 4 C 0.366 3.634 5 O -0.428 6.428 6 N -0.341 5.341 7 C -0.006 4.006 8 C -0.187 4.187 9 H 0.146 0.854 10 C 0.409 3.591 11 F -0.154 7.154 12 F -0.169 7.169 13 F -0.165 7.165 14 C 0.066 3.934 15 H 0.093 0.907 16 N -0.350 5.350 17 C -0.384 4.384 18 H 0.092 0.908 19 C -0.200 4.200 20 N -0.572 5.572 21 Si 0.739 3.261 22 H -0.216 1.216 23 H -0.210 1.210 24 H -0.211 1.211 25 C -0.053 4.053 26 C -0.131 4.131 27 C -0.229 4.229 28 C -0.193 4.193 29 H 0.095 0.905 30 H 0.090 0.910 31 H 0.093 0.907 32 H 0.149 0.851 33 H 0.110 0.890 34 H 0.095 0.905 35 H 0.222 0.778 36 H 0.068 0.932 37 H 0.114 0.886 38 H 0.084 0.916 39 H 0.149 0.851 40 H 0.113 0.887 41 H 0.111 0.889 42 H 0.113 0.887 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 1.734 -9.811 -10.384 14.391 hybrid contribution -0.386 0.978 0.393 1.123 sum 1.349 -8.832 -9.991 13.404 Atomic orbital electron populations 1.20989 0.91165 1.03417 1.02743 1.21738 0.95175 0.93145 0.91483 1.22343 0.93043 0.98856 1.08660 1.18102 0.87531 0.81454 0.76325 1.90715 1.71126 1.30770 1.50148 1.48684 1.07031 1.08198 1.70206 1.22072 0.83245 0.95265 0.99972 1.23861 0.94219 0.96487 1.04092 0.85407 1.20307 0.84219 0.78950 0.75596 1.93235 1.96610 1.43695 1.81902 1.93167 1.50931 1.78831 1.93956 1.93150 1.95724 1.95541 1.32126 1.21048 0.87200 0.95097 0.90091 0.90673 1.42406 1.46476 1.38895 1.07222 1.19145 1.14397 1.08262 0.96632 0.90808 1.24766 1.00167 0.99300 0.95773 1.69657 1.45027 1.40967 1.01592 0.86257 0.81227 0.81804 0.76791 1.21631 1.21030 1.21082 1.23601 1.01643 0.81114 0.98938 1.21435 1.00339 0.87873 1.03486 1.23122 0.99043 0.98682 1.02048 1.22790 1.02548 1.02550 0.91418 0.90533 0.90974 0.90670 0.85099 0.88969 0.90463 0.77785 0.93169 0.88640 0.91650 0.85088 0.88731 0.88897 0.88668 0.89010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.30 9.49 36.01 0.34 -0.96 16 2 C -0.01 -0.18 5.80 -101.17 -0.59 -0.77 16 3 C -0.21 -3.13 9.16 -37.81 -0.35 -3.48 16 4 C 0.57 9.76 7.77 -12.66 -0.10 9.66 16 5 O -0.55 -10.22 13.58 5.27 0.07 -10.15 16 6 N -0.61 -9.77 3.32 -170.68 -0.57 -10.33 16 7 C 0.12 1.72 6.38 -2.41 -0.02 1.71 16 8 C -0.17 -2.56 2.84 -89.22 -0.25 -2.81 16 9 H 0.13 2.09 7.64 -51.93 -0.40 1.69 16 10 C 0.46 6.85 2.53 37.16 0.09 6.94 16 11 F -0.17 -2.90 16.93 2.25 0.04 -2.86 16 12 F -0.19 -2.66 17.17 2.25 0.04 -2.62 16 13 F -0.18 -2.59 16.05 2.25 0.04 -2.55 16 14 C 0.18 3.16 2.99 -66.51 -0.20 2.96 16 15 H 0.08 1.34 7.37 -51.93 -0.38 0.96 16 16 N -0.71 -16.10 5.14 -52.06 -0.27 -16.36 16 17 C -0.25 -6.43 9.97 -15.06 -0.15 -6.58 16 18 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 19 C 0.00 -0.07 5.50 -17.43 -0.10 -0.17 16 20 N -0.93 -26.50 13.06 55.49 0.72 -25.78 16 21 Si 0.91 21.14 29.55 -169.99 -5.02 16.12 16 22 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 23 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 24 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 25 C 0.07 1.15 6.61 -2.39 -0.02 1.14 16 26 C -0.11 -1.51 4.35 -91.77 -0.40 -1.91 16 27 C -0.19 -2.00 9.79 -26.73 -0.26 -2.26 16 28 C -0.16 -1.92 10.23 -26.73 -0.27 -2.19 16 29 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.07 0.66 6.37 -51.93 -0.33 0.33 16 31 H 0.07 0.79 8.07 -51.92 -0.42 0.37 16 32 H 0.13 1.88 6.69 -52.49 -0.35 1.52 16 33 H 0.09 1.35 7.88 -51.93 -0.41 0.94 16 34 H 0.08 1.01 7.22 -51.93 -0.37 0.63 16 35 H 0.39 9.62 7.50 -40.82 -0.31 9.31 16 36 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 37 H 0.10 1.63 6.57 -51.93 -0.34 1.29 16 38 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 39 H 0.13 1.99 6.24 -51.93 -0.32 1.66 16 40 H 0.09 0.86 6.31 -51.93 -0.33 0.53 16 41 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 42 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 43 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 364.23 15.07 5.49 5.49 Total: -1.00 -29.02 364.23 -7.34 -36.36 By element: Atomic # 1 Polarization: 17.03 SS G_CDS: -5.62 Total: 11.41 kcal Atomic # 6 Polarization: 3.55 SS G_CDS: -2.26 Total: 1.29 kcal Atomic # 7 Polarization: -52.37 SS G_CDS: -0.11 Total: -52.47 kcal Atomic # 8 Polarization: -10.22 SS G_CDS: 0.07 Total: -10.15 kcal Atomic # 9 Polarization: -8.15 SS G_CDS: 0.11 Total: -8.04 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -29.02 -7.34 -36.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099217864.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.667 kcal (2) G-P(sol) polarization free energy of solvation -29.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds