Wall clock time and date at job start Tue Mar 31 2020 17:20:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.32987 * 120.00128 * 2 1 4 4 C 1.47106 * 119.99753 * 172.96127 * 3 2 1 5 5 O 1.21612 * 120.00300 * 354.03476 * 4 3 2 6 6 N 1.34779 * 119.99927 * 174.03919 * 4 3 2 7 7 C 1.48144 * 127.84093 * 179.97438 * 6 4 3 8 8 C 1.54388 * 104.61997 * 219.60426 * 7 6 4 9 9 H 1.08997 * 110.34175 * 95.00168 * 8 7 6 10 10 C 1.52999 * 110.34138 * 217.25809 * 8 7 6 11 11 F 1.39907 * 109.46811 * 175.53629 * 10 8 7 12 12 F 1.39895 * 109.47258 * 295.53632 * 10 8 7 13 13 F 1.39897 * 109.46958 * 55.54253 * 10 8 7 14 14 C 1.54289 * 104.95903 * 336.13323 * 8 7 6 15 15 H 1.08996 * 110.42846 * 241.08339 * 14 8 7 16 16 N 1.46497 * 110.34307 * 118.87166 * 14 8 7 17 17 C 1.36934 * 120.00246 * 158.00709 * 16 14 8 18 18 H 1.08000 * 119.99439 * 0.02562 * 17 16 14 19 19 C 1.38810 * 120.00481 * 179.97438 * 17 16 14 20 20 N 1.31622 * 119.99485 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00067 * 180.27615 * 19 17 16 22 22 H 1.48497 * 109.46871 * 179.72768 * 21 19 17 23 23 H 1.48498 * 109.47141 * 299.72699 * 21 19 17 24 24 H 1.48498 * 109.47084 * 59.72639 * 21 19 17 25 25 C 1.48147 * 127.83822 * 359.96974 * 6 4 3 26 26 C 1.50700 * 119.99556 * 180.02562 * 2 1 3 27 27 C 1.52996 * 117.50201 * 1.64536 * 26 2 1 28 28 C 1.53000 * 117.49903 * 293.02016 * 26 2 1 29 29 H 1.08999 * 109.47236 * 89.99481 * 1 2 3 30 30 H 1.08997 * 109.47320 * 210.00221 * 1 2 3 31 31 H 1.09008 * 109.46962 * 330.00077 * 1 2 3 32 32 H 1.07997 * 120.00563 * 352.95812 * 3 2 1 33 33 H 1.09002 * 110.40644 * 338.38691 * 7 6 4 34 34 H 1.08995 * 110.40882 * 100.69913 * 7 6 4 35 35 H 0.96998 * 119.99914 * 338.00735 * 16 14 8 36 36 H 0.97005 * 119.99691 * 179.97438 * 20 19 17 37 37 H 1.09003 * 110.40864 * 21.61313 * 25 6 4 38 38 H 1.08999 * 110.50959 * 259.23170 * 25 6 4 39 39 H 1.09004 * 115.54975 * 147.35985 * 26 2 1 40 40 H 1.09000 * 117.49894 * 0.02562 * 27 26 2 41 41 H 1.08998 * 117.50241 * 145.02716 * 27 26 2 42 42 H 1.09000 * 117.50221 * 214.98079 * 28 26 2 43 43 H 1.08996 * 117.50123 * 0.02562 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1517 0.0000 4 6 3.6347 1.1564 0.1561 5 8 4.2243 0.1196 0.3935 6 7 4.3215 2.3099 0.0362 7 6 5.7836 2.5140 0.1593 8 6 5.9279 3.8488 0.9216 9 1 6.0480 3.6644 1.9892 10 6 7.1178 4.6441 0.3809 11 9 7.1708 5.8913 1.0127 12 9 8.3014 3.9426 0.6340 13 9 6.9691 4.8260 -0.9982 14 6 4.6103 4.6053 0.6530 15 1 4.8093 5.5443 0.1365 16 7 3.9020 4.8569 1.9104 17 6 2.9801 5.8666 1.9868 18 1 2.7750 6.4771 1.1199 19 6 2.3086 6.1047 3.1781 20 7 2.5584 5.3602 4.2344 21 14 1.0454 7.4770 3.2800 22 1 0.4704 7.5199 4.6485 23 1 1.6995 8.7753 2.9770 24 1 -0.0378 7.2269 2.2955 25 6 3.7855 3.6613 -0.2487 26 6 2.2604 -1.3052 -0.0006 27 6 1.4388 -2.5952 -0.0401 28 6 2.1539 -2.1829 1.2481 29 1 -0.3634 0.0001 -1.0276 30 1 -0.3634 -0.8899 0.5138 31 1 -0.3633 0.8901 0.5139 32 1 1.6382 2.0835 -0.1147 33 1 6.2344 1.7008 0.7282 34 1 6.2417 2.5862 -0.8271 35 1 4.0861 4.3083 2.6889 36 1 2.0893 5.5268 5.0670 37 1 2.7285 3.7138 0.0123 38 1 3.9300 3.9158 -1.2987 39 1 3.2126 -1.2981 -0.5310 40 1 0.3533 -2.4999 -0.0662 41 1 1.8503 -3.4371 -0.5967 42 1 3.0359 -2.7536 1.5389 43 1 1.5387 -1.8166 2.0698 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099217864.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:20:42 Heat of formation + Delta-G solvation = -139.614631 kcal Electronic energy + Delta-G solvation = -29683.597552 eV Core-core repulsion = 25121.970323 eV Total energy + Delta-G solvation = -4561.627230 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.145 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -51.13637 -48.61002 -48.58841 -41.19317 -39.52472 -38.19116 -35.79062 -34.39298 -33.46573 -32.26164 -29.19937 -29.10765 -26.84332 -26.04119 -24.36022 -23.55259 -23.14603 -21.76708 -21.12861 -19.65393 -19.54063 -19.29243 -18.95097 -18.34093 -18.07186 -17.06315 -16.67837 -16.41311 -16.02691 -15.67117 -15.48184 -15.29659 -15.17366 -15.13256 -15.01042 -14.79320 -14.70912 -14.67843 -14.26774 -14.07758 -13.90837 -13.55178 -13.33357 -13.11279 -13.02894 -12.82584 -12.62976 -12.57182 -12.42644 -12.24718 -12.19181 -12.09522 -11.76153 -11.68455 -11.28969 -11.06909 -10.54635 -10.00226 -9.67379 -9.02700 -7.94149 -5.25189 0.34829 1.51339 1.53145 1.58353 1.59914 2.02150 2.23896 2.54628 2.75944 2.83252 2.97342 3.06738 3.37685 3.51611 3.63879 3.68578 3.82004 3.87949 4.00616 4.04862 4.13783 4.21955 4.24636 4.39838 4.50415 4.54149 4.61831 4.72014 4.74656 4.78198 4.81790 4.92856 4.96853 5.08251 5.16645 5.25566 5.34078 5.47861 5.54216 5.63521 6.23938 6.53724 7.17749 7.32631 7.99228 8.24300 9.28409 Molecular weight = 332.15amu Principal moments of inertia in cm(-1) A = 0.008151 B = 0.004850 C = 0.003303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3434.245943 B = 5772.135842 C = 8475.174619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.004 3.996 3 C -0.241 4.241 4 C 0.564 3.436 5 O -0.572 6.572 6 N -0.613 5.613 7 C 0.121 3.879 8 C -0.157 4.157 9 H 0.116 0.884 10 C 0.473 3.527 11 F -0.185 7.185 12 F -0.181 7.181 13 F -0.175 7.175 14 C 0.173 3.827 15 H 0.080 0.920 16 N -0.722 5.722 17 C -0.242 4.242 18 H 0.085 0.915 19 C -0.065 4.065 20 N -0.967 5.967 21 Si 0.969 3.031 22 H -0.302 1.302 23 H -0.279 1.279 24 H -0.274 1.274 25 C 0.084 3.916 26 C -0.138 4.138 27 C -0.160 4.160 28 C -0.167 4.167 29 H 0.100 0.900 30 H 0.088 0.912 31 H 0.071 0.929 32 H 0.134 0.866 33 H 0.089 0.911 34 H 0.099 0.901 35 H 0.373 0.627 36 H 0.250 0.750 37 H 0.082 0.918 38 H 0.097 0.903 39 H 0.108 0.892 40 H 0.116 0.884 41 H 0.107 0.893 42 H 0.091 0.909 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.649 -9.818 -12.472 15.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.002 3.998 3 C -0.262 4.262 4 C 0.359 3.641 5 O -0.455 6.455 6 N -0.345 5.345 7 C -0.002 4.002 8 C -0.178 4.178 9 H 0.134 0.866 10 C 0.419 3.581 11 F -0.166 7.166 12 F -0.163 7.163 13 F -0.157 7.157 14 C 0.063 3.937 15 H 0.098 0.902 16 N -0.361 5.361 17 C -0.373 4.373 18 H 0.103 0.897 19 C -0.258 4.258 20 N -0.617 5.617 21 Si 0.798 3.202 22 H -0.229 1.229 23 H -0.205 1.205 24 H -0.199 1.199 25 C -0.041 4.041 26 C -0.156 4.156 27 C -0.196 4.196 28 C -0.204 4.204 29 H 0.118 0.882 30 H 0.106 0.894 31 H 0.090 0.910 32 H 0.151 0.849 33 H 0.107 0.893 34 H 0.117 0.883 35 H 0.206 0.794 36 H 0.059 0.941 37 H 0.101 0.899 38 H 0.115 0.885 39 H 0.126 0.874 40 H 0.134 0.866 41 H 0.125 0.875 42 H 0.109 0.891 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 0.810 -10.261 -12.389 16.107 hybrid contribution -0.019 1.037 0.917 1.384 sum 0.791 -9.224 -11.472 14.742 Atomic orbital electron populations 1.21082 0.88704 1.04063 1.04362 1.22136 0.96848 0.92562 0.88222 1.22340 0.92076 0.99784 1.12001 1.18512 0.88412 0.81292 0.75902 1.90699 1.71763 1.31523 1.51491 1.48749 1.07570 1.08071 1.70081 1.22147 0.82778 0.94405 1.00888 1.23687 0.93530 0.96819 1.03772 0.86572 1.20048 0.84023 0.78287 0.75767 1.93217 1.96655 1.44498 1.82247 1.93182 1.50484 1.78627 1.93963 1.93168 1.95688 1.95460 1.31350 1.21233 0.87986 0.96056 0.88472 0.90231 1.42525 1.46719 1.38314 1.08533 1.19556 1.13437 1.07835 0.96501 0.89678 1.25491 1.02673 1.01810 0.95834 1.69818 1.46755 1.43146 1.01942 0.85292 0.79340 0.79442 0.76147 1.22863 1.20532 1.19950 1.23420 1.00328 0.80431 0.99950 1.21366 1.00539 0.89241 1.04497 1.23232 0.99867 0.96898 0.99648 1.22832 1.03069 1.02652 0.91866 0.88197 0.89367 0.90962 0.84859 0.89252 0.88258 0.79422 0.94108 0.89933 0.88531 0.87393 0.86600 0.87475 0.89081 0.89109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.28 9.49 71.24 0.68 -1.61 16 2 C 0.00 0.11 5.80 -17.62 -0.10 0.01 16 3 C -0.24 -7.23 9.16 23.43 0.21 -7.02 16 4 C 0.56 19.39 7.77 86.57 0.67 20.06 16 5 O -0.57 -21.81 13.58 -4.07 -0.06 -21.86 16 6 N -0.61 -19.38 3.32 -812.15 -2.69 -22.07 16 7 C 0.12 3.42 6.38 86.53 0.55 3.97 16 8 C -0.16 -4.75 2.84 -9.89 -0.03 -4.78 16 9 H 0.12 3.86 7.64 -2.39 -0.02 3.84 16 10 C 0.47 13.35 2.53 71.98 0.18 13.53 16 11 F -0.18 -6.02 16.93 44.97 0.76 -5.26 16 12 F -0.18 -4.89 17.17 44.97 0.77 -4.12 16 13 F -0.18 -4.54 16.05 44.97 0.72 -3.82 16 14 C 0.17 6.01 2.99 45.91 0.14 6.14 16 15 H 0.08 2.72 7.37 -2.39 -0.02 2.70 16 16 N -0.72 -32.94 5.14 -318.61 -1.64 -34.58 16 17 C -0.24 -12.21 9.97 84.03 0.84 -11.37 16 18 H 0.09 4.02 7.83 -2.91 -0.02 4.00 16 19 C -0.07 -3.51 5.50 84.86 0.47 -3.05 16 20 N -0.97 -56.72 13.06 21.65 0.28 -56.44 16 21 Si 0.97 43.62 29.55 68.60 2.03 45.65 16 22 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 23 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 24 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 25 C 0.08 2.56 6.61 86.55 0.57 3.13 16 26 C -0.14 -3.56 4.35 -11.54 -0.05 -3.61 16 27 C -0.16 -2.91 9.79 30.59 0.30 -2.61 16 28 C -0.17 -3.96 10.23 30.59 0.31 -3.64 16 29 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.09 1.33 6.37 -2.39 -0.02 1.31 16 31 H 0.07 1.39 8.07 -2.38 -0.02 1.37 16 32 H 0.13 3.82 6.69 -2.91 -0.02 3.80 16 33 H 0.09 2.60 7.88 -2.39 -0.02 2.58 16 34 H 0.10 2.38 7.22 -2.39 -0.02 2.36 16 35 H 0.37 19.04 7.50 -92.71 -0.70 18.34 16 36 H 0.25 14.45 8.31 -92.70 -0.77 13.68 16 37 H 0.08 2.77 6.57 -2.39 -0.02 2.76 16 38 H 0.10 2.37 8.14 -2.39 -0.02 2.35 16 39 H 0.11 3.32 6.24 -2.38 -0.01 3.30 16 40 H 0.12 1.64 6.31 -2.39 -0.02 1.62 16 41 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 42 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 43 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 Total: -1.00 -63.11 364.23 5.29 -57.82 By element: Atomic # 1 Polarization: 35.16 SS G_CDS: 0.36 Total: 35.52 kcal Atomic # 6 Polarization: 4.41 SS G_CDS: 4.74 Total: 9.15 kcal Atomic # 7 Polarization: -109.04 SS G_CDS: -4.05 Total: -113.09 kcal Atomic # 8 Polarization: -21.81 SS G_CDS: -0.06 Total: -21.86 kcal Atomic # 9 Polarization: -15.45 SS G_CDS: 2.26 Total: -13.20 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.65 kcal Total: -63.11 5.29 -57.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099217864.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.792 kcal (2) G-P(sol) polarization free energy of solvation -63.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds