Wall clock time and date at job start Tue Mar 31 2020 16:15:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32870 * 1 3 3 C 1.47122 * 120.00232 * 2 1 4 4 C 1.50701 * 119.99944 * 0.02562 * 3 2 1 5 5 C 1.32870 * 120.00232 * 180.02562 * 3 2 1 6 6 C 1.50694 * 120.00269 * 186.13149 * 5 3 2 7 7 C 1.50697 * 109.47690 * 125.96184 * 6 5 3 8 8 O 1.21291 * 119.99375 * 0.02562 * 7 6 5 9 9 N 1.34773 * 120.00352 * 179.97438 * 7 6 5 10 10 C 1.48144 * 127.83594 * 179.97438 * 9 7 6 11 11 C 1.54391 * 104.61921 * 219.60784 * 10 9 7 12 12 H 1.08998 * 110.34412 * 95.00143 * 11 10 9 13 13 C 1.52993 * 110.34526 * 217.26529 * 11 10 9 14 14 F 1.39900 * 109.47330 * 175.53446 * 13 11 10 15 15 F 1.39900 * 109.47106 * 295.53324 * 13 11 10 16 16 F 1.39903 * 109.47486 * 55.53762 * 13 11 10 17 17 C 1.54287 * 104.95741 * 336.13634 * 11 10 9 18 18 H 1.09003 * 110.43110 * 241.08431 * 17 11 10 19 19 N 1.46501 * 110.34510 * 118.87137 * 17 11 10 20 20 C 1.36937 * 120.00094 * 158.00999 * 19 17 11 21 21 H 1.07995 * 120.00060 * 359.97438 * 20 19 17 22 22 C 1.38813 * 119.99824 * 179.97438 * 20 19 17 23 23 N 1.31621 * 119.99768 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 119.99892 * 180.27382 * 22 20 19 25 25 H 1.48507 * 109.46787 * 269.72674 * 24 22 20 26 26 H 1.48494 * 109.47212 * 29.72775 * 24 22 20 27 27 H 1.48497 * 109.47149 * 149.72880 * 24 22 20 28 28 C 1.48144 * 127.83688 * 359.97438 * 9 7 6 29 29 H 1.07999 * 119.99707 * 359.97438 * 1 2 3 30 30 H 1.07997 * 120.00060 * 180.02562 * 1 2 3 31 31 H 1.07999 * 120.00081 * 180.02562 * 2 1 3 32 32 H 1.08998 * 109.47102 * 213.43397 * 4 3 2 33 33 H 1.09000 * 109.46956 * 333.42778 * 4 3 2 34 34 H 1.08999 * 109.47155 * 93.42722 * 4 3 2 35 35 H 1.07999 * 119.99681 * 6.12606 * 5 3 2 36 36 H 1.08999 * 109.47376 * 5.96248 * 6 5 3 37 37 H 1.09000 * 109.47423 * 245.96629 * 6 5 3 38 38 H 1.09005 * 110.41037 * 338.39314 * 10 9 7 39 39 H 1.09005 * 110.40937 * 100.70747 * 10 9 7 40 40 H 0.96998 * 119.99488 * 338.00333 * 19 17 11 41 41 H 0.97005 * 119.99291 * 180.02562 * 23 22 20 42 42 H 1.08996 * 110.40712 * 21.61359 * 28 9 7 43 43 H 1.08993 * 110.50478 * 259.22205 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3287 0.0000 0.0000 3 6 2.0644 1.2741 0.0000 4 6 1.3109 2.5792 0.0006 5 6 3.3931 1.2741 -0.0005 6 6 4.1466 2.5716 0.1389 7 6 5.1209 2.4664 1.2838 8 8 5.1962 1.4385 1.9233 9 7 5.9091 3.5139 1.5964 10 6 6.9186 3.6009 2.6772 11 6 6.7599 5.0280 3.2445 12 1 6.0993 5.0199 4.1114 13 6 8.1258 5.6057 3.6206 14 9 7.9724 6.9328 4.0361 15 9 8.6803 4.8525 4.6609 16 9 8.9736 5.5604 2.5086 17 6 6.1294 5.8447 2.0974 18 1 6.7914 6.6585 1.8012 19 7 4.8253 6.3731 2.5053 20 6 4.2963 7.4611 1.8639 21 1 4.8406 7.9300 1.0576 22 6 3.0604 7.9614 2.2501 23 7 2.3973 7.3902 3.2331 24 14 2.3353 9.4409 1.3700 25 1 2.7685 10.6854 2.0548 26 1 2.8078 9.4602 -0.0376 27 1 0.8530 9.3534 1.3935 28 6 5.9628 4.8394 0.9371 29 1 -0.5399 0.9353 0.0004 30 1 -0.5400 -0.9353 0.0004 31 1 1.8687 -0.9353 -0.0004 32 1 1.8717 3.3228 -0.5657 33 1 0.3331 2.4344 -0.4588 34 1 1.1828 2.9244 1.0265 35 1 3.9330 0.3441 -0.1007 36 1 3.4433 3.3812 0.3337 37 1 4.6904 2.7769 -0.7832 38 1 6.7132 2.8598 3.4497 39 1 7.9211 3.4598 2.2733 40 1 4.3366 5.9521 3.2297 41 1 1.5334 7.7396 3.5027 42 1 5.0362 5.0329 0.3967 43 1 6.8154 4.8951 0.2604 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001112148394.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:15:58 Heat of formation + Delta-G solvation = -138.893203 kcal Electronic energy + Delta-G solvation = -29484.561023 eV Core-core repulsion = 24922.965076 eV Total energy + Delta-G solvation = -4561.595946 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.145 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.93080 -47.44233 -47.34491 -39.88164 -37.83777 -36.66063 -34.10032 -32.63289 -31.89550 -30.65658 -28.73891 -27.65105 -26.82749 -25.20257 -24.26450 -22.41583 -21.04651 -20.37772 -19.16961 -18.34072 -18.03030 -17.83301 -17.75594 -16.91601 -16.72688 -16.02740 -15.40489 -15.16195 -14.82638 -14.34620 -14.27432 -14.08719 -13.86731 -13.81855 -13.68484 -13.51374 -13.49314 -13.35964 -13.30637 -13.11566 -12.65545 -12.27881 -12.18645 -11.91907 -11.69417 -11.52471 -11.38368 -11.29476 -10.97187 -10.91689 -10.90843 -10.76398 -10.45375 -10.23383 -9.90879 -9.68970 -9.23476 -8.57200 -8.15988 -7.21685 -5.95709 -3.28458 1.36656 2.74358 2.88674 3.01666 3.28982 3.32907 3.38646 3.40470 3.96518 4.06180 4.18858 4.44863 4.71139 4.73650 4.86734 4.92366 5.03536 5.22411 5.28471 5.31045 5.36773 5.44159 5.44534 5.51971 5.56008 5.64945 5.72052 5.87550 5.91334 5.93840 6.00765 6.09929 6.15230 6.21048 6.38820 6.50364 6.51357 6.74437 6.98692 7.52434 7.72753 8.19272 8.34811 9.32386 9.81365 10.16851 11.25585 Molecular weight = 332.15amu Principal moments of inertia in cm(-1) A = 0.007960 B = 0.004787 C = 0.003205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3516.565905 B = 5848.238402 C = 8735.470205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.113 4.113 3 C -0.107 4.107 4 C -0.125 4.125 5 C -0.120 4.120 6 C -0.113 4.113 7 C 0.546 3.454 8 O -0.548 6.548 9 N -0.614 5.614 10 C 0.117 3.883 11 C -0.165 4.165 12 H 0.128 0.872 13 C 0.464 3.536 14 F -0.173 7.173 15 F -0.187 7.187 16 F -0.184 7.184 17 C 0.179 3.821 18 H 0.076 0.924 19 N -0.710 5.710 20 C -0.254 4.254 21 H 0.075 0.925 22 C -0.002 4.002 23 N -0.925 5.925 24 Si 0.908 3.092 25 H -0.288 1.288 26 H -0.280 1.280 27 H -0.291 1.291 28 C 0.072 3.928 29 H 0.103 0.897 30 H 0.098 0.902 31 H 0.112 0.888 32 H 0.071 0.929 33 H 0.064 0.936 34 H 0.073 0.927 35 H 0.115 0.885 36 H 0.112 0.888 37 H 0.100 0.900 38 H 0.092 0.908 39 H 0.078 0.922 40 H 0.387 0.613 41 H 0.258 0.742 42 H 0.096 0.904 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.540 -9.187 -5.714 12.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.131 4.131 3 C -0.107 4.107 4 C -0.182 4.182 5 C -0.138 4.138 6 C -0.152 4.152 7 C 0.335 3.665 8 O -0.426 6.426 9 N -0.347 5.347 10 C -0.007 4.007 11 C -0.187 4.187 12 H 0.146 0.854 13 C 0.409 3.591 14 F -0.154 7.154 15 F -0.169 7.169 16 F -0.165 7.165 17 C 0.066 3.934 18 H 0.094 0.906 19 N -0.350 5.350 20 C -0.385 4.385 21 H 0.093 0.907 22 C -0.199 4.199 23 N -0.572 5.572 24 Si 0.738 3.262 25 H -0.215 1.215 26 H -0.205 1.205 27 H -0.217 1.217 28 C -0.054 4.054 29 H 0.121 0.879 30 H 0.117 0.883 31 H 0.130 0.870 32 H 0.089 0.911 33 H 0.083 0.917 34 H 0.092 0.908 35 H 0.133 0.867 36 H 0.130 0.870 37 H 0.118 0.882 38 H 0.110 0.890 39 H 0.096 0.904 40 H 0.222 0.778 41 H 0.068 0.932 42 H 0.114 0.886 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 5.447 -9.645 -5.493 12.364 hybrid contribution -0.321 0.859 -0.007 0.917 sum 5.126 -8.786 -5.499 11.564 Atomic orbital electron populations 1.24407 0.95755 1.01977 1.00703 1.21851 0.95281 0.96015 0.99916 1.20597 0.93941 0.94422 1.01722 1.20920 0.99961 0.94257 1.03028 1.22738 0.93869 0.97538 0.99678 1.20757 0.98201 0.98776 0.97489 1.20116 0.79740 0.81590 0.85013 1.90679 1.69003 1.29242 1.53678 1.48821 1.38225 1.14483 1.33197 1.22093 0.92876 0.94373 0.91310 1.23860 0.92474 0.97777 1.04564 0.85382 1.20300 0.87867 0.76564 0.74341 1.93235 1.95731 1.36111 1.90345 1.93170 1.87590 1.76318 1.59786 1.93152 1.73938 1.96237 1.53209 1.21045 0.90136 0.93069 0.89180 0.90609 1.42424 1.16354 1.34578 1.41691 1.19189 1.00789 1.05057 1.13435 0.90731 1.24764 0.97400 0.99383 0.98402 1.69665 1.15208 1.42274 1.30013 0.86197 0.78321 0.82598 0.79061 1.21495 1.20537 1.21680 1.23617 1.02827 0.81593 0.97409 0.87916 0.88348 0.86998 0.91062 0.91685 0.90833 0.86657 0.87007 0.88154 0.88971 0.90384 0.77785 0.93190 0.88607 0.91484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.00 14.11 28.88 0.41 -1.60 16 2 C -0.11 -1.33 9.83 -37.83 -0.37 -1.70 16 3 C -0.11 -1.40 5.98 -102.87 -0.62 -2.01 16 4 C -0.13 -1.60 8.55 36.01 0.31 -1.30 16 5 C -0.12 -1.61 8.45 -36.16 -0.31 -1.92 16 6 C -0.11 -1.53 4.74 -29.04 -0.14 -1.67 16 7 C 0.55 8.89 7.91 -10.99 -0.09 8.81 16 8 O -0.55 -10.52 16.30 5.55 0.09 -10.43 16 9 N -0.61 -9.37 3.32 -169.28 -0.56 -9.93 16 10 C 0.12 1.66 6.38 -2.41 -0.02 1.64 16 11 C -0.17 -2.48 2.84 -89.22 -0.25 -2.74 16 12 H 0.13 2.04 7.64 -51.93 -0.40 1.64 16 13 C 0.46 6.69 2.53 37.15 0.09 6.79 16 14 F -0.17 -2.84 16.93 2.25 0.04 -2.80 16 15 F -0.19 -2.61 17.17 2.25 0.04 -2.57 16 16 F -0.18 -2.52 16.05 2.25 0.04 -2.49 16 17 C 0.18 3.05 2.99 -66.51 -0.20 2.85 16 18 H 0.08 1.31 7.37 -51.93 -0.38 0.93 16 19 N -0.71 -15.59 5.14 -52.05 -0.27 -15.85 16 20 C -0.25 -6.27 9.97 -15.06 -0.15 -6.42 16 21 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 22 C 0.00 -0.06 5.50 -17.43 -0.10 -0.15 16 23 N -0.93 -25.90 13.06 55.49 0.72 -25.18 16 24 Si 0.91 20.77 29.55 -169.99 -5.02 15.74 16 25 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 26 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 27 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 28 C 0.07 1.06 6.63 -2.39 -0.02 1.05 16 29 H 0.10 1.05 6.09 -52.49 -0.32 0.73 16 30 H 0.10 0.85 8.06 -52.49 -0.42 0.42 16 31 H 0.11 1.19 8.06 -52.49 -0.42 0.76 16 32 H 0.07 0.88 6.63 -51.93 -0.34 0.54 16 33 H 0.06 0.73 6.26 -51.93 -0.33 0.40 16 34 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.12 1.52 8.05 -52.49 -0.42 1.10 16 36 H 0.11 1.60 5.59 -51.93 -0.29 1.31 16 37 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.09 1.33 7.88 -51.93 -0.41 0.92 16 39 H 0.08 0.98 7.22 -51.93 -0.37 0.61 16 40 H 0.39 9.33 7.50 -40.82 -0.31 9.02 16 41 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 42 H 0.10 1.52 7.22 -51.93 -0.37 1.14 16 43 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 369.38 15.07 5.57 5.57 Total: -1.00 -28.95 369.38 -6.40 -35.36 By element: Atomic # 1 Polarization: 16.57 SS G_CDS: -5.61 Total: 10.96 kcal Atomic # 6 Polarization: 3.07 SS G_CDS: -1.44 Total: 1.63 kcal Atomic # 7 Polarization: -50.86 SS G_CDS: -0.10 Total: -50.96 kcal Atomic # 8 Polarization: -10.52 SS G_CDS: 0.09 Total: -10.43 kcal Atomic # 9 Polarization: -7.98 SS G_CDS: 0.11 Total: -7.86 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -28.95 -6.40 -35.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112148394.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.538 kcal (2) G-P(sol) polarization free energy of solvation -28.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds