Wall clock time and date at job start Tue Mar 31 2020 16:15:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32870 * 1 3 3 C 1.47122 * 120.00232 * 2 1 4 4 C 1.50701 * 119.99944 * 0.02562 * 3 2 1 5 5 C 1.32870 * 120.00232 * 180.02562 * 3 2 1 6 6 C 1.50694 * 120.00269 * 186.13149 * 5 3 2 7 7 C 1.50697 * 109.47690 * 125.96184 * 6 5 3 8 8 O 1.21291 * 119.99375 * 0.02562 * 7 6 5 9 9 N 1.34773 * 120.00352 * 179.97438 * 7 6 5 10 10 C 1.48144 * 127.83594 * 179.97438 * 9 7 6 11 11 C 1.54391 * 104.61921 * 219.60784 * 10 9 7 12 12 H 1.08998 * 110.34412 * 95.00143 * 11 10 9 13 13 C 1.52993 * 110.34526 * 217.26529 * 11 10 9 14 14 F 1.39900 * 109.47330 * 175.53446 * 13 11 10 15 15 F 1.39900 * 109.47106 * 295.53324 * 13 11 10 16 16 F 1.39903 * 109.47486 * 55.53762 * 13 11 10 17 17 C 1.54287 * 104.95741 * 336.13634 * 11 10 9 18 18 H 1.09003 * 110.43110 * 241.08431 * 17 11 10 19 19 N 1.46501 * 110.34510 * 118.87137 * 17 11 10 20 20 C 1.36937 * 120.00094 * 158.00999 * 19 17 11 21 21 H 1.07995 * 120.00060 * 359.97438 * 20 19 17 22 22 C 1.38813 * 119.99824 * 179.97438 * 20 19 17 23 23 N 1.31621 * 119.99768 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 119.99892 * 180.27382 * 22 20 19 25 25 H 1.48507 * 109.46787 * 269.72674 * 24 22 20 26 26 H 1.48494 * 109.47212 * 29.72775 * 24 22 20 27 27 H 1.48497 * 109.47149 * 149.72880 * 24 22 20 28 28 C 1.48144 * 127.83688 * 359.97438 * 9 7 6 29 29 H 1.07999 * 119.99707 * 359.97438 * 1 2 3 30 30 H 1.07997 * 120.00060 * 180.02562 * 1 2 3 31 31 H 1.07999 * 120.00081 * 180.02562 * 2 1 3 32 32 H 1.08998 * 109.47102 * 213.43397 * 4 3 2 33 33 H 1.09000 * 109.46956 * 333.42778 * 4 3 2 34 34 H 1.08999 * 109.47155 * 93.42722 * 4 3 2 35 35 H 1.07999 * 119.99681 * 6.12606 * 5 3 2 36 36 H 1.08999 * 109.47376 * 5.96248 * 6 5 3 37 37 H 1.09000 * 109.47423 * 245.96629 * 6 5 3 38 38 H 1.09005 * 110.41037 * 338.39314 * 10 9 7 39 39 H 1.09005 * 110.40937 * 100.70747 * 10 9 7 40 40 H 0.96998 * 119.99488 * 338.00333 * 19 17 11 41 41 H 0.97005 * 119.99291 * 180.02562 * 23 22 20 42 42 H 1.08996 * 110.40712 * 21.61359 * 28 9 7 43 43 H 1.08993 * 110.50478 * 259.22205 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3287 0.0000 0.0000 3 6 2.0644 1.2741 0.0000 4 6 1.3109 2.5792 0.0006 5 6 3.3931 1.2741 -0.0005 6 6 4.1466 2.5716 0.1389 7 6 5.1209 2.4664 1.2838 8 8 5.1962 1.4385 1.9233 9 7 5.9091 3.5139 1.5964 10 6 6.9186 3.6009 2.6772 11 6 6.7599 5.0280 3.2445 12 1 6.0993 5.0199 4.1114 13 6 8.1258 5.6057 3.6206 14 9 7.9724 6.9328 4.0361 15 9 8.6803 4.8525 4.6609 16 9 8.9736 5.5604 2.5086 17 6 6.1294 5.8447 2.0974 18 1 6.7914 6.6585 1.8012 19 7 4.8253 6.3731 2.5053 20 6 4.2963 7.4611 1.8639 21 1 4.8406 7.9300 1.0576 22 6 3.0604 7.9614 2.2501 23 7 2.3973 7.3902 3.2331 24 14 2.3353 9.4409 1.3700 25 1 2.7685 10.6854 2.0548 26 1 2.8078 9.4602 -0.0376 27 1 0.8530 9.3534 1.3935 28 6 5.9628 4.8394 0.9371 29 1 -0.5399 0.9353 0.0004 30 1 -0.5400 -0.9353 0.0004 31 1 1.8687 -0.9353 -0.0004 32 1 1.8717 3.3228 -0.5657 33 1 0.3331 2.4344 -0.4588 34 1 1.1828 2.9244 1.0265 35 1 3.9330 0.3441 -0.1007 36 1 3.4433 3.3812 0.3337 37 1 4.6904 2.7769 -0.7832 38 1 6.7132 2.8598 3.4497 39 1 7.9211 3.4598 2.2733 40 1 4.3366 5.9521 3.2297 41 1 1.5334 7.7396 3.5027 42 1 5.0362 5.0329 0.3967 43 1 6.8154 4.8951 0.2604 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001112148394.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:15:57 Heat of formation + Delta-G solvation = -154.487424 kcal Electronic energy + Delta-G solvation = -29485.237239 eV Core-core repulsion = 24922.965076 eV Total energy + Delta-G solvation = -4562.272162 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.145 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -51.12621 -48.60086 -48.57854 -41.15479 -39.12903 -37.72228 -35.79759 -33.81752 -33.19743 -32.20899 -29.78936 -29.11909 -27.89706 -26.35838 -25.95964 -23.80678 -22.07395 -21.69135 -20.37326 -19.58769 -19.40727 -19.14784 -18.79424 -18.32866 -18.02148 -17.16772 -16.81555 -16.37118 -16.25938 -15.65205 -15.48534 -15.32896 -15.18527 -15.04886 -15.00934 -14.87020 -14.72991 -14.69089 -14.49473 -14.25883 -13.74392 -13.53412 -13.34154 -13.26478 -13.04233 -12.87035 -12.62181 -12.55282 -12.52365 -12.32540 -12.22740 -12.05055 -11.75936 -11.72224 -11.40646 -11.11762 -10.92619 -9.90897 -9.12571 -9.02806 -7.93158 -5.23881 0.41810 1.50549 1.52294 1.53767 1.60842 1.65525 1.93105 2.21283 2.55417 2.76960 2.82935 2.98024 3.39071 3.52580 3.68211 3.75434 3.83534 3.89508 3.98874 4.01543 4.22632 4.30426 4.38974 4.42583 4.50458 4.54138 4.56926 4.73555 4.75085 4.80934 4.86573 4.93746 4.99036 5.13303 5.21815 5.47367 5.56883 5.59537 5.78458 6.03487 6.25062 6.47797 7.08422 7.34217 8.00590 8.25373 9.29374 Molecular weight = 332.15amu Principal moments of inertia in cm(-1) A = 0.007960 B = 0.004787 C = 0.003205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3516.565905 B = 5848.238402 C = 8735.470205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.137 4.137 3 C -0.109 4.109 4 C -0.125 4.125 5 C -0.134 4.134 6 C -0.105 4.105 7 C 0.540 3.460 8 O -0.582 6.582 9 N -0.614 5.614 10 C 0.119 3.881 11 C -0.157 4.157 12 H 0.116 0.884 13 C 0.473 3.527 14 F -0.185 7.185 15 F -0.182 7.182 16 F -0.175 7.175 17 C 0.173 3.827 18 H 0.081 0.919 19 N -0.722 5.722 20 C -0.239 4.239 21 H 0.087 0.913 22 C -0.064 4.064 23 N -0.966 5.966 24 Si 0.964 3.036 25 H -0.293 1.293 26 H -0.263 1.263 27 H -0.302 1.302 28 C 0.081 3.919 29 H 0.103 0.897 30 H 0.120 0.880 31 H 0.121 0.879 32 H 0.073 0.927 33 H 0.080 0.920 34 H 0.053 0.947 35 H 0.116 0.884 36 H 0.103 0.897 37 H 0.127 0.873 38 H 0.087 0.913 39 H 0.102 0.898 40 H 0.374 0.626 41 H 0.249 0.751 42 H 0.088 0.912 43 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.461 -9.492 -7.387 13.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.155 4.155 3 C -0.109 4.109 4 C -0.181 4.181 5 C -0.153 4.153 6 C -0.144 4.144 7 C 0.331 3.669 8 O -0.462 6.462 9 N -0.347 5.347 10 C -0.004 4.004 11 C -0.179 4.179 12 H 0.134 0.866 13 C 0.418 3.582 14 F -0.166 7.166 15 F -0.163 7.163 16 F -0.156 7.156 17 C 0.062 3.938 18 H 0.099 0.901 19 N -0.361 5.361 20 C -0.370 4.370 21 H 0.104 0.896 22 C -0.257 4.257 23 N -0.615 5.615 24 Si 0.794 3.206 25 H -0.221 1.221 26 H -0.187 1.187 27 H -0.229 1.229 28 C -0.044 4.044 29 H 0.122 0.878 30 H 0.138 0.862 31 H 0.139 0.861 32 H 0.092 0.908 33 H 0.098 0.902 34 H 0.072 0.928 35 H 0.134 0.866 36 H 0.121 0.879 37 H 0.145 0.855 38 H 0.106 0.894 39 H 0.120 0.880 40 H 0.206 0.794 41 H 0.058 0.942 42 H 0.106 0.894 43 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 6.432 -9.942 -7.208 13.863 hybrid contribution -0.547 0.911 0.529 1.187 sum 5.886 -9.030 -6.679 12.681 Atomic orbital electron populations 1.24650 0.95383 1.03088 0.98213 1.21972 0.95927 0.95807 1.01812 1.20792 0.94077 0.95082 1.00934 1.20915 1.00945 0.94340 1.01904 1.22756 0.94095 0.97514 1.00917 1.20733 0.97577 0.98568 0.97557 1.20596 0.79765 0.81230 0.85286 1.90658 1.70015 1.30580 1.54970 1.48882 1.38135 1.14365 1.33326 1.22179 0.93745 0.93361 0.91152 1.23694 0.92591 0.98103 1.03487 0.86606 1.20070 0.87608 0.75935 0.74584 1.93216 1.95810 1.37093 1.90527 1.93185 1.87436 1.76098 1.59630 1.93171 1.73590 1.96149 1.52711 1.21249 0.88054 0.93935 0.90590 0.90143 1.42545 1.17930 1.34279 1.41368 1.19583 1.00211 1.04706 1.12493 0.89565 1.25442 0.98443 1.02119 0.99648 1.69815 1.15390 1.44099 1.32241 0.85278 0.76826 0.79588 0.78879 1.22091 1.18738 1.22877 1.23487 1.03980 0.80402 0.96503 0.87841 0.86214 0.86129 0.90848 0.90165 0.92834 0.86618 0.87911 0.85512 0.89425 0.88031 0.79391 0.94165 0.89369 0.87957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.38 14.11 66.64 0.94 -2.44 16 2 C -0.14 -3.09 9.83 23.43 0.23 -2.86 16 3 C -0.11 -2.80 5.98 -18.71 -0.11 -2.91 16 4 C -0.12 -3.16 8.55 71.24 0.61 -2.55 16 5 C -0.13 -3.56 8.45 24.51 0.21 -3.35 16 6 C -0.11 -2.76 4.74 29.10 0.14 -2.63 16 7 C 0.54 17.17 7.91 87.66 0.69 17.87 16 8 O -0.58 -22.22 16.30 -3.06 -0.05 -22.27 16 9 N -0.61 -17.79 3.32 -807.88 -2.68 -20.47 16 10 C 0.12 3.16 6.38 86.54 0.55 3.71 16 11 C -0.16 -4.54 2.84 -9.89 -0.03 -4.56 16 12 H 0.12 3.69 7.64 -2.39 -0.02 3.67 16 13 C 0.47 12.80 2.53 71.98 0.18 12.98 16 14 F -0.19 -5.85 16.93 44.97 0.76 -5.09 16 15 F -0.18 -4.77 17.17 44.97 0.77 -4.00 16 16 F -0.17 -4.31 16.05 44.97 0.72 -3.58 16 17 C 0.17 5.61 2.99 45.91 0.14 5.75 16 18 H 0.08 2.59 7.37 -2.39 -0.02 2.57 16 19 N -0.72 -31.46 5.14 -318.58 -1.64 -33.10 16 20 C -0.24 -11.59 9.97 84.03 0.84 -10.75 16 21 H 0.09 3.92 7.83 -2.91 -0.02 3.90 16 22 C -0.06 -3.33 5.50 84.86 0.47 -2.86 16 23 N -0.97 -55.30 13.06 21.65 0.28 -55.02 16 24 Si 0.96 42.72 29.55 68.60 2.03 44.75 16 25 H -0.29 -13.11 7.11 99.48 0.71 -12.41 16 26 H -0.26 -10.75 7.11 99.48 0.71 -10.05 16 27 H -0.30 -13.79 7.11 99.48 0.71 -13.08 16 28 C 0.08 2.23 6.63 86.55 0.57 2.80 16 29 H 0.10 1.94 6.09 -2.91 -0.02 1.93 16 30 H 0.12 1.76 8.06 -2.91 -0.02 1.73 16 31 H 0.12 2.44 8.06 -2.91 -0.02 2.42 16 32 H 0.07 1.79 6.63 -2.39 -0.02 1.77 16 33 H 0.08 1.73 6.26 -2.39 -0.01 1.72 16 34 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.12 3.01 8.05 -2.91 -0.02 2.99 16 36 H 0.10 2.91 5.59 -2.39 -0.01 2.90 16 37 H 0.13 2.57 8.14 -2.39 -0.02 2.55 16 38 H 0.09 2.45 7.88 -2.38 -0.02 2.44 16 39 H 0.10 2.26 7.22 -2.38 -0.02 2.24 16 40 H 0.37 18.30 7.50 -92.71 -0.70 17.60 16 41 H 0.25 14.11 8.31 -92.70 -0.77 13.34 16 42 H 0.09 2.61 7.22 -2.39 -0.02 2.59 16 43 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 Total: -1.00 -62.05 369.38 5.98 -56.07 By element: Atomic # 1 Polarization: 34.16 SS G_CDS: 0.35 Total: 34.51 kcal Atomic # 6 Polarization: 2.77 SS G_CDS: 5.43 Total: 8.20 kcal Atomic # 7 Polarization: -104.55 SS G_CDS: -4.03 Total: -108.59 kcal Atomic # 8 Polarization: -22.22 SS G_CDS: -0.05 Total: -22.27 kcal Atomic # 9 Polarization: -14.93 SS G_CDS: 2.26 Total: -12.67 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.75 kcal Total: -62.05 5.98 -56.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112148394.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.414 kcal (2) G-P(sol) polarization free energy of solvation -62.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds