Wall clock time and date at job start Tue Mar 31 2020 16:16:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32865 * 1 3 3 C 1.47113 * 120.00349 * 2 1 4 4 C 1.50701 * 120.00176 * 354.53481 * 3 2 1 5 5 C 1.32872 * 120.00222 * 174.81810 * 3 2 1 6 6 C 1.50707 * 119.99935 * 6.10912 * 5 3 2 7 7 C 1.50701 * 109.46748 * 126.00344 * 6 5 3 8 8 O 1.21278 * 120.00584 * 0.02562 * 7 6 5 9 9 N 1.34774 * 119.99488 * 180.02562 * 7 6 5 10 10 C 1.48150 * 127.83736 * 179.70380 * 9 7 6 11 11 C 1.53988 * 104.82076 * 219.53959 * 10 9 7 12 12 H 1.08993 * 110.25016 * 95.28162 * 11 10 9 13 13 C 1.53002 * 110.48463 * 217.46998 * 11 10 9 14 14 F 1.39908 * 109.46847 * 175.66998 * 13 11 10 15 15 F 1.39896 * 109.46914 * 295.66340 * 13 11 10 16 16 F 1.39896 * 109.47661 * 55.66798 * 13 11 10 17 17 C 1.54286 * 104.99763 * 336.43101 * 11 10 9 18 18 H 1.09003 * 110.34803 * 240.93523 * 17 11 10 19 19 N 1.46506 * 110.33884 * 118.67651 * 17 11 10 20 20 C 1.36935 * 119.99784 * 158.01169 * 19 17 11 21 21 H 1.08005 * 120.00303 * 359.97438 * 20 19 17 22 22 C 1.38810 * 120.00155 * 180.02562 * 20 19 17 23 23 N 1.31622 * 119.99790 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 120.00361 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.46951 * 59.99718 * 24 22 20 26 26 H 1.48497 * 109.47280 * 180.02562 * 24 22 20 27 27 H 1.48500 * 109.47146 * 300.00126 * 24 22 20 28 28 C 1.48146 * 127.84365 * 0.02591 * 9 7 6 29 29 H 1.07996 * 120.00404 * 180.02562 * 1 2 3 30 30 H 1.07998 * 119.99710 * 0.02562 * 1 2 3 31 31 H 1.08007 * 119.99982 * 179.97438 * 2 1 3 32 32 H 1.09007 * 109.46685 * 89.99967 * 4 3 2 33 33 H 1.08996 * 109.47233 * 210.00395 * 4 3 2 34 34 H 1.08997 * 109.46677 * 330.00671 * 4 3 2 35 35 H 1.07999 * 120.00342 * 186.11326 * 5 3 2 36 36 H 1.08997 * 109.47003 * 246.00362 * 6 5 3 37 37 H 1.08998 * 109.46978 * 6.00521 * 6 5 3 38 38 H 1.08996 * 110.40876 * 338.37309 * 10 9 7 39 39 H 1.09004 * 110.40571 * 100.80542 * 10 9 7 40 40 H 0.96995 * 119.99922 * 338.01371 * 19 17 11 41 41 H 0.97004 * 120.00197 * 180.02562 * 23 22 20 42 42 H 1.08994 * 110.41144 * 259.20401 * 28 9 7 43 43 H 1.09006 * 110.40163 * 21.51292 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3286 0.0000 0.0000 3 6 2.0643 1.2740 0.0000 4 6 1.3160 2.5762 -0.1243 5 6 3.3889 1.2763 0.1039 6 6 4.1487 -0.0251 0.0831 7 6 5.2099 0.0299 -0.9855 8 8 5.3371 1.0276 -1.6631 9 7 6.0176 -1.0298 -1.1881 10 6 7.1048 -1.1663 -2.1851 11 6 6.9922 -2.6150 -2.6948 12 1 6.4032 -2.6478 -3.6113 13 6 8.3822 -3.2075 -2.9356 14 9 8.2589 -4.5519 -3.3025 15 9 9.0190 -2.5007 -3.9613 16 9 9.1395 -3.1116 -1.7632 17 6 6.2712 -3.3806 -1.5659 18 1 6.9071 -4.1787 -1.1830 19 7 5.0020 -3.9279 -2.0518 20 6 4.4213 -4.9868 -1.4065 21 1 4.8991 -5.4189 -0.5395 22 6 3.2191 -5.5058 -1.8671 23 7 2.6370 -4.9797 -2.9239 24 14 2.4272 -6.9509 -0.9872 25 1 2.1402 -6.5761 0.4208 26 1 1.1602 -7.3132 -1.6716 27 1 3.3521 -8.1124 -1.0115 28 6 6.0154 -2.3249 -0.4688 29 1 -0.5400 -0.9352 0.0004 30 1 -0.5399 0.9353 -0.0004 31 1 1.8687 -0.9354 0.0004 32 1 1.0509 2.9391 0.8688 33 1 1.9470 3.3116 -0.6234 34 1 0.4090 2.4197 -0.7080 35 1 3.9212 2.2108 0.2034 36 1 4.6181 -0.1872 1.0534 37 1 3.4612 -0.8438 -0.1293 38 1 6.9588 -0.4635 -3.0053 39 1 8.0747 -1.0060 -1.7142 40 1 4.5731 -3.5402 -2.8306 41 1 1.7967 -5.3421 -3.2456 42 1 6.8124 -2.3483 0.2744 43 1 5.0489 -2.4942 0.0062 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001112148395.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:16:02 Heat of formation + Delta-G solvation = -137.105776 kcal Electronic energy + Delta-G solvation = -29569.753017 eV Core-core repulsion = 25008.234580 eV Total energy + Delta-G solvation = -4561.518437 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.145 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.92977 -47.44119 -47.34227 -39.88416 -37.84691 -36.65547 -34.09460 -32.37037 -31.64877 -30.67270 -29.76666 -27.64927 -26.38500 -24.71521 -24.15888 -22.33315 -21.68645 -20.38465 -19.37233 -18.34016 -18.02631 -17.84445 -17.39887 -16.87785 -16.72921 -15.72882 -15.49214 -15.25702 -14.70051 -14.41440 -14.30442 -14.22704 -13.84090 -13.76080 -13.68943 -13.51472 -13.48787 -13.35414 -13.30158 -13.01977 -12.50645 -12.30700 -12.19401 -11.95457 -11.85082 -11.66147 -11.50444 -11.32866 -10.95476 -10.92344 -10.88327 -10.49439 -10.35432 -10.26115 -9.90058 -9.67597 -9.22520 -8.56408 -8.12369 -7.21341 -5.94915 -3.27843 1.43929 2.75217 2.89384 3.06053 3.31244 3.33261 3.38987 3.39957 3.96688 4.06795 4.19331 4.45239 4.72775 4.76045 4.87842 4.95535 5.03485 5.19235 5.23511 5.31604 5.42695 5.44797 5.52350 5.55738 5.61743 5.66042 5.68662 5.73500 5.85787 5.91793 6.00646 6.05458 6.10772 6.20778 6.46437 6.50990 6.61481 6.82119 7.04314 7.52321 7.73408 8.19908 8.35514 9.32889 9.81870 10.17400 11.26192 Molecular weight = 332.15amu Principal moments of inertia in cm(-1) A = 0.007823 B = 0.005148 C = 0.003325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3578.339245 B = 5437.496022 C = 8420.092816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.125 4.125 3 C -0.107 4.107 4 C -0.114 4.114 5 C -0.120 4.120 6 C -0.114 4.114 7 C 0.545 3.455 8 O -0.548 6.548 9 N -0.614 5.614 10 C 0.117 3.883 11 C -0.166 4.166 12 H 0.128 0.872 13 C 0.464 3.536 14 F -0.173 7.173 15 F -0.187 7.187 16 F -0.184 7.184 17 C 0.179 3.821 18 H 0.076 0.924 19 N -0.710 5.710 20 C -0.255 4.255 21 H 0.074 0.926 22 C -0.002 4.002 23 N -0.925 5.925 24 Si 0.908 3.092 25 H -0.284 1.284 26 H -0.290 1.290 27 H -0.284 1.284 28 C 0.072 3.928 29 H 0.101 0.899 30 H 0.098 0.902 31 H 0.123 0.877 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.117 0.883 36 H 0.100 0.900 37 H 0.112 0.888 38 H 0.092 0.908 39 H 0.078 0.922 40 H 0.387 0.613 41 H 0.259 0.741 42 H 0.067 0.933 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.019 9.486 5.715 12.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.142 4.142 3 C -0.107 4.107 4 C -0.171 4.171 5 C -0.138 4.138 6 C -0.153 4.153 7 C 0.335 3.665 8 O -0.426 6.426 9 N -0.347 5.347 10 C -0.006 4.006 11 C -0.187 4.187 12 H 0.146 0.854 13 C 0.409 3.591 14 F -0.154 7.154 15 F -0.169 7.169 16 F -0.165 7.165 17 C 0.066 3.934 18 H 0.094 0.906 19 N -0.350 5.350 20 C -0.385 4.385 21 H 0.092 0.908 22 C -0.199 4.199 23 N -0.571 5.571 24 Si 0.738 3.262 25 H -0.211 1.211 26 H -0.216 1.216 27 H -0.210 1.210 28 C -0.054 4.054 29 H 0.120 0.880 30 H 0.116 0.884 31 H 0.140 0.860 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.135 0.865 36 H 0.118 0.882 37 H 0.130 0.870 38 H 0.110 0.890 39 H 0.096 0.904 40 H 0.222 0.778 41 H 0.069 0.931 42 H 0.085 0.915 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 4.946 9.936 5.452 12.366 hybrid contribution -0.329 -1.001 0.053 1.055 sum 4.617 8.935 5.505 11.466 Atomic orbital electron populations 1.24388 0.95766 1.01833 1.00136 1.22080 0.95526 0.96528 1.00113 1.20580 0.94079 0.94397 1.01623 1.20769 1.00243 0.94335 1.01705 1.22747 0.93754 0.97502 0.99839 1.20799 0.97145 0.98944 0.98457 1.20138 0.80709 0.81180 0.84457 1.90671 1.71069 1.31525 1.49348 1.48829 1.33829 1.15670 1.36401 1.22007 0.91441 0.93872 0.93317 1.23787 0.91817 0.97620 1.05494 0.85403 1.20296 0.88359 0.76728 0.73669 1.93237 1.96094 1.34537 1.91546 1.93169 1.84447 1.78676 1.60568 1.93150 1.78791 1.95952 1.48638 1.21040 0.89829 0.93050 0.89508 0.90605 1.42415 1.20386 1.37335 1.34898 1.19140 1.02885 1.07242 1.09283 0.90793 1.24766 0.97837 0.99521 0.97819 1.69652 1.19160 1.43219 1.25086 0.86273 0.78681 0.82418 0.78798 1.21056 1.21615 1.21022 1.23613 1.03151 0.82331 0.96333 0.88028 0.88428 0.85953 0.91761 0.91648 0.91530 0.86477 0.88207 0.87047 0.88967 0.90427 0.77771 0.93132 0.91499 0.88638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.28 14.07 28.88 0.41 -1.87 16 2 C -0.12 -1.72 9.30 -37.83 -0.35 -2.07 16 3 C -0.11 -1.40 5.98 -102.87 -0.61 -2.02 16 4 C -0.11 -1.22 9.39 36.01 0.34 -0.88 16 5 C -0.12 -1.62 8.43 -36.16 -0.30 -1.93 16 6 C -0.11 -1.58 4.92 -29.03 -0.14 -1.72 16 7 C 0.55 8.95 7.91 -10.99 -0.09 8.86 16 8 O -0.55 -10.54 16.30 5.56 0.09 -10.45 16 9 N -0.61 -9.44 3.32 -169.55 -0.56 -10.00 16 10 C 0.12 1.67 6.37 -2.62 -0.02 1.65 16 11 C -0.17 -2.50 2.82 -89.43 -0.25 -2.76 16 12 H 0.13 2.04 7.64 -51.93 -0.40 1.65 16 13 C 0.46 6.72 2.53 37.16 0.09 6.82 16 14 F -0.17 -2.85 16.93 2.25 0.04 -2.81 16 15 F -0.19 -2.62 17.17 2.25 0.04 -2.58 16 16 F -0.18 -2.53 16.05 2.25 0.04 -2.50 16 17 C 0.18 3.06 2.99 -66.53 -0.20 2.87 16 18 H 0.08 1.32 7.37 -51.93 -0.38 0.93 16 19 N -0.71 -15.66 5.14 -52.06 -0.27 -15.93 16 20 C -0.26 -6.31 9.97 -15.06 -0.15 -6.47 16 21 H 0.07 1.76 7.83 -52.48 -0.41 1.35 16 22 C 0.00 -0.05 5.50 -17.43 -0.10 -0.15 16 23 N -0.92 -25.98 13.06 55.49 0.72 -25.26 16 24 Si 0.91 20.86 29.55 -169.99 -5.02 15.83 16 25 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 26 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 27 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 28 C 0.07 1.07 6.63 -2.41 -0.02 1.06 16 29 H 0.10 1.21 8.06 -52.49 -0.42 0.79 16 30 H 0.10 1.04 6.31 -52.49 -0.33 0.70 16 31 H 0.12 1.79 5.83 -52.48 -0.31 1.49 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.68 8.07 -51.93 -0.42 0.26 16 34 H 0.07 0.68 6.67 -51.93 -0.35 0.33 16 35 H 0.12 1.52 8.06 -52.49 -0.42 1.10 16 36 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.11 1.63 5.14 -51.93 -0.27 1.37 16 38 H 0.09 1.34 7.88 -51.93 -0.41 0.93 16 39 H 0.08 0.99 7.21 -51.93 -0.37 0.61 16 40 H 0.39 9.38 7.50 -40.82 -0.31 9.07 16 41 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 42 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.10 1.52 7.22 -51.93 -0.37 1.15 16 LS Contribution 369.15 15.07 5.56 5.56 Total: -1.00 -29.04 369.15 -6.33 -35.36 By element: Atomic # 1 Polarization: 16.94 SS G_CDS: -5.57 Total: 11.37 kcal Atomic # 6 Polarization: 2.79 SS G_CDS: -1.39 Total: 1.40 kcal Atomic # 7 Polarization: -51.08 SS G_CDS: -0.11 Total: -51.19 kcal Atomic # 8 Polarization: -10.54 SS G_CDS: 0.09 Total: -10.45 kcal Atomic # 9 Polarization: -8.00 SS G_CDS: 0.11 Total: -7.89 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -29.04 -6.33 -35.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112148395.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.742 kcal (2) G-P(sol) polarization free energy of solvation -29.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds