Wall clock time and date at job start Tue Mar 31 2020 16:17:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.46888 * 2 1 4 4 C 1.53005 * 109.46953 * 119.99553 * 2 1 3 5 5 H 1.09000 * 115.55983 * 274.31299 * 4 2 1 6 6 C 1.53066 * 117.49353 * 128.60462 * 4 2 1 7 7 C 1.52990 * 117.49681 * 60.00305 * 4 2 1 8 8 H 1.08993 * 117.50522 * 359.97438 * 7 4 2 9 9 N 1.46506 * 117.49779 * 214.97884 * 7 4 2 10 10 C 1.34774 * 120.00218 * 155.08918 * 9 7 4 11 11 O 1.21369 * 119.99766 * 0.02562 * 10 9 7 12 12 C 1.49315 * 120.00465 * 180.02562 * 10 9 7 13 13 O 1.21396 * 119.99346 * 0.02562 * 12 10 9 14 14 N 1.34774 * 120.00465 * 179.97438 * 12 10 9 15 15 C 1.39735 * 120.00062 * 174.55152 * 14 12 10 16 16 C 1.39000 * 120.00830 * 325.01039 * 15 14 12 17 17 C 1.37974 * 119.99206 * 180.29821 * 16 15 14 18 18 C 1.38933 * 120.00614 * 359.97438 * 17 16 15 19 19 O 1.35757 * 119.99002 * 180.02562 * 18 17 16 20 20 C 1.34807 * 116.99886 * 185.58113 * 19 18 17 21 21 H 1.07993 * 119.99789 * 5.35600 * 20 19 18 22 22 C 1.38655 * 119.99538 * 185.35745 * 20 19 18 23 23 N 1.31552 * 120.00571 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 119.99466 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47377 * 59.99776 * 24 22 20 26 26 H 1.48496 * 109.46994 * 179.97438 * 24 22 20 27 27 H 1.48497 * 109.47083 * 299.99824 * 24 22 20 28 28 C 1.38933 * 120.01804 * 359.97438 * 18 17 16 29 29 C 1.37969 * 120.00527 * 0.02562 * 28 18 17 30 30 H 1.08991 * 109.47623 * 300.00403 * 1 2 3 31 31 H 1.09002 * 109.46892 * 60.00456 * 1 2 3 32 32 H 1.09004 * 109.46598 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47342 * 239.99826 * 2 1 3 34 34 H 1.09003 * 109.46668 * 179.97438 * 3 2 1 35 35 H 1.09002 * 109.46982 * 299.99489 * 3 2 1 36 36 H 1.08991 * 109.47318 * 59.99410 * 3 2 1 37 37 H 1.09001 * 117.51675 * 145.03298 * 6 4 2 38 38 H 1.09006 * 117.51250 * 359.97438 * 6 4 2 39 39 H 0.96996 * 119.99855 * 335.08836 * 9 7 4 40 40 H 0.96997 * 119.99847 * 354.55341 * 14 12 10 41 41 H 1.07994 * 120.00319 * 0.25359 * 16 15 14 42 42 H 1.07999 * 119.99485 * 179.97438 * 17 16 15 43 43 H 0.96997 * 120.00111 * 179.97438 * 23 22 20 44 44 H 1.07999 * 119.99669 * 180.02562 * 28 18 17 45 45 H 1.08006 * 120.00356 * 179.97438 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2494 5 1 2.1270 -0.1060 2.1449 6 6 3.0743 -1.8320 1.0513 7 6 1.6357 -2.1851 1.4344 8 1 1.0062 -2.6343 0.6665 9 7 1.3952 -2.6527 2.8018 10 6 0.5862 -3.7082 3.0206 11 8 0.0572 -4.2715 2.0847 12 6 0.3406 -4.1845 4.4142 13 8 0.8693 -3.6207 5.3503 14 7 -0.4689 -5.2396 4.6330 15 6 -0.6095 -5.7566 5.9236 16 6 0.4756 -5.7621 6.7923 17 6 0.3381 -6.2783 8.0644 18 6 -0.8850 -6.7921 8.4773 19 8 -1.0200 -7.2994 9.7292 20 6 -2.1963 -7.8862 10.0282 21 1 -2.9462 -8.0138 9.2616 22 6 -2.4432 -8.3257 11.3198 23 7 -1.5295 -8.1707 12.2535 24 14 -4.0735 -9.1381 11.7342 25 1 -4.2455 -10.3558 10.9017 26 1 -4.0878 -9.5150 13.1704 27 1 -5.1830 -8.1900 11.4596 28 6 -1.9700 -6.7858 7.6097 29 6 -1.8332 -6.2697 6.3375 30 1 -0.3634 0.5138 0.8898 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5138 -0.8899 34 1 3.1300 1.4425 0.0005 35 1 1.6767 1.9564 -0.8900 36 1 1.6766 1.9564 0.8898 37 1 3.8418 -1.9477 1.8166 38 1 3.3909 -2.0492 0.0311 39 1 1.8183 -2.2028 3.5497 40 1 -0.9539 -5.6401 3.8946 41 1 1.4264 -5.3631 6.4713 42 1 1.1813 -6.2830 8.7392 43 1 -1.7025 -8.4778 13.1571 44 1 -2.9207 -7.1848 7.9311 45 1 -2.6767 -6.2652 5.6629 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001117994429.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:17:55 Heat of formation + Delta-G solvation = -49.900938 kcal Electronic energy + Delta-G solvation = -26768.099549 eV Core-core repulsion = 22752.219337 eV Total energy + Delta-G solvation = -4015.880212 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.95132 -39.61656 -38.77267 -38.10524 -36.63743 -34.96240 -34.00791 -32.38259 -32.23643 -30.30830 -28.37907 -27.57350 -25.76293 -25.00533 -23.40358 -22.50055 -22.12344 -21.22515 -20.64293 -20.01496 -18.70733 -18.03507 -17.45657 -16.99306 -16.26559 -16.12078 -15.85324 -15.29448 -14.71348 -14.63307 -14.56484 -14.24771 -14.07435 -13.62319 -13.54930 -13.47050 -13.21100 -12.99766 -12.87713 -12.61313 -12.58839 -11.97934 -11.78211 -11.73649 -11.70375 -11.66542 -11.51522 -11.36954 -11.14477 -11.08023 -10.74275 -10.51043 -10.48093 -9.84496 -9.64888 -9.32014 -9.17576 -8.77698 -8.29234 -7.02927 -6.49630 -4.07401 1.18137 2.09455 2.12486 2.28881 3.06328 3.11247 3.13940 3.15042 3.44487 3.50025 3.93201 4.17154 4.26941 4.35760 4.44326 4.50869 4.59072 4.84022 4.91006 5.05635 5.12232 5.23278 5.25863 5.29456 5.41057 5.46906 5.47895 5.49594 5.62715 5.67735 5.70969 5.88003 5.92386 6.00531 6.02013 6.11751 6.15011 6.67074 6.70237 6.77503 6.94351 7.03410 7.15271 7.30790 7.44258 7.63219 7.68962 7.94267 8.05107 8.95324 9.64246 10.67856 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.033845 B = 0.001764 C = 0.001738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.114502 B =15872.010511 C =16104.379069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.065 4.065 3 C -0.145 4.145 4 C -0.150 4.150 5 H 0.110 0.890 6 C -0.184 4.184 7 C 0.079 3.921 8 H 0.141 0.859 9 N -0.674 5.674 10 C 0.517 3.483 11 O -0.520 6.520 12 C 0.497 3.503 13 O -0.509 6.509 14 N -0.623 5.623 15 C 0.024 3.976 16 C -0.063 4.063 17 C -0.178 4.178 18 C 0.150 3.850 19 O -0.172 6.172 20 C -0.393 4.393 21 H 0.093 0.907 22 C 0.040 3.960 23 N -0.859 5.859 24 Si 0.942 3.058 25 H -0.269 1.269 26 H -0.278 1.278 27 H -0.270 1.270 28 C -0.219 4.219 29 C -0.081 4.081 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.057 0.943 33 H 0.073 0.927 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.056 0.944 37 H 0.100 0.900 38 H 0.105 0.895 39 H 0.415 0.585 40 H 0.414 0.586 41 H 0.123 0.877 42 H 0.123 0.877 43 H 0.272 0.728 44 H 0.134 0.866 45 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.525 13.790 -23.153 27.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.083 4.083 3 C -0.202 4.202 4 C -0.169 4.169 5 H 0.128 0.872 6 C -0.223 4.223 7 C -0.026 4.026 8 H 0.159 0.841 9 N -0.326 5.326 10 C 0.298 3.702 11 O -0.395 6.395 12 C 0.278 3.722 13 O -0.384 6.384 14 N -0.269 5.269 15 C -0.068 4.068 16 C -0.083 4.083 17 C -0.198 4.198 18 C 0.096 3.904 19 O -0.075 6.075 20 C -0.469 4.469 21 H 0.110 0.890 22 C -0.165 4.165 23 N -0.493 5.493 24 Si 0.766 3.234 25 H -0.194 1.194 26 H -0.202 1.202 27 H -0.195 1.195 28 C -0.239 4.239 29 C -0.101 4.101 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.091 0.909 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.119 0.881 38 H 0.123 0.877 39 H 0.252 0.748 40 H 0.250 0.750 41 H 0.141 0.859 42 H 0.141 0.859 43 H 0.081 0.919 44 H 0.151 0.849 45 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 5.705 13.699 -22.696 27.117 hybrid contribution -0.863 -0.316 0.216 0.944 sum 4.842 13.382 -22.480 26.606 Atomic orbital electron populations 1.21845 0.94681 1.02201 1.01882 1.20713 0.95917 0.96071 0.95639 1.21809 1.01109 0.95347 1.01939 1.22972 1.02739 0.90683 1.00548 0.87185 1.23652 0.92811 1.02291 1.03531 1.21792 0.98709 0.96955 0.85154 0.84147 1.45102 1.47481 1.31305 1.08691 1.20166 0.79551 0.80820 0.89658 1.90754 1.48756 1.55728 1.44276 1.19942 0.81822 0.81518 0.88959 1.90799 1.48770 1.55254 1.43578 1.42865 1.44393 1.29772 1.09860 1.17203 0.95234 1.08867 0.85463 1.20553 0.97081 0.97752 0.92877 1.20095 0.96476 1.06721 0.96498 1.19446 0.93193 0.91497 0.86289 1.83995 1.36702 1.63027 1.23773 1.21292 0.92692 1.36894 0.96046 0.89011 1.25308 0.99398 0.97356 0.94406 1.70024 1.33456 1.43274 1.02576 0.85770 0.80150 0.79401 0.78061 1.19443 1.20245 1.19461 1.20989 1.00099 1.08685 0.94136 1.20511 0.94367 0.99235 0.95948 0.92485 0.92558 0.92393 0.90867 0.92507 0.92513 0.92532 0.88139 0.87683 0.74850 0.74959 0.85920 0.85916 0.91850 0.84882 0.86822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 9.03 37.16 0.34 -0.57 16 2 C -0.06 -0.36 3.07 -90.61 -0.28 -0.63 16 3 C -0.14 -0.70 9.18 37.16 0.34 -0.36 16 4 C -0.15 -0.92 5.08 -90.59 -0.46 -1.38 16 5 H 0.11 0.67 8.11 -51.93 -0.42 0.24 16 6 C -0.18 -1.12 10.11 -26.70 -0.27 -1.39 16 7 C 0.08 0.63 5.63 -67.94 -0.38 0.25 16 8 H 0.14 1.24 6.86 -51.93 -0.36 0.89 16 9 N -0.67 -6.55 5.56 -54.29 -0.30 -6.85 16 10 C 0.52 6.42 7.88 -11.65 -0.09 6.33 16 11 O -0.52 -7.23 16.05 5.48 0.09 -7.14 16 12 C 0.50 7.19 7.61 -11.65 -0.09 7.10 16 13 O -0.51 -8.47 14.28 5.46 0.08 -8.40 16 14 N -0.62 -9.11 5.32 -10.27 -0.05 -9.17 16 15 C 0.02 0.43 6.25 -83.69 -0.52 -0.09 16 16 C -0.06 -1.20 8.65 -39.40 -0.34 -1.54 16 17 C -0.18 -3.81 9.98 -39.42 -0.39 -4.20 16 18 C 0.15 3.58 6.65 -39.07 -0.26 3.32 16 19 O -0.17 -4.83 9.75 0.09 0.00 -4.83 16 20 C -0.39 -10.75 9.44 30.89 0.29 -10.46 16 21 H 0.09 2.29 5.28 -52.49 -0.28 2.01 16 22 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 23 N -0.86 -24.83 13.67 55.48 0.76 -24.07 16 24 Si 0.94 20.11 29.55 -169.99 -5.02 15.09 16 25 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 26 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 27 H -0.27 -5.58 7.11 56.52 0.40 -5.17 16 28 C -0.22 -4.61 9.13 -39.42 -0.36 -4.97 16 29 C -0.08 -1.44 9.96 -39.40 -0.39 -1.83 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.06 0.40 7.29 -51.93 -0.38 0.02 16 33 H 0.07 0.38 7.90 -51.93 -0.41 -0.03 16 34 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 35 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 36 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 37 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.10 0.54 8.05 -51.93 -0.42 0.12 16 39 H 0.41 3.64 8.30 -40.82 -0.34 3.30 16 40 H 0.41 5.12 8.30 -40.82 -0.34 4.78 16 41 H 0.12 2.22 6.53 -52.49 -0.34 1.87 16 42 H 0.12 2.52 8.06 -52.49 -0.42 2.10 16 43 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 44 H 0.13 2.76 5.70 -52.49 -0.30 2.46 16 45 H 0.11 1.66 8.06 -52.48 -0.42 1.24 16 LS Contribution 384.23 15.07 5.79 5.79 Total: -1.00 -31.62 384.23 -7.73 -39.35 By element: Atomic # 1 Polarization: 15.77 SS G_CDS: -6.10 Total: 9.67 kcal Atomic # 6 Polarization: -6.48 SS G_CDS: -2.97 Total: -9.45 kcal Atomic # 7 Polarization: -40.49 SS G_CDS: 0.40 Total: -40.08 kcal Atomic # 8 Polarization: -20.53 SS G_CDS: 0.17 Total: -20.37 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.02 Total: 15.09 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -31.62 -7.73 -39.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117994429.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.548 kcal (2) G-P(sol) polarization free energy of solvation -31.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds