Wall clock time and date at job start Tue Mar 31 2020 16:26:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52993 * 109.47117 * 2 1 4 4 C 1.50702 * 109.47445 * 239.99449 * 2 1 3 5 5 H 1.08002 * 120.00127 * 241.35356 * 4 2 1 6 6 C 1.37878 * 119.99752 * 61.34940 * 4 2 1 7 7 N 1.31507 * 119.99813 * 193.97648 * 6 4 2 8 8 Si 1.86801 * 119.99917 * 13.97706 * 6 4 2 9 9 H 1.48496 * 109.47003 * 84.54914 * 8 6 4 10 10 H 1.48501 * 109.47160 * 204.54884 * 8 6 4 11 11 H 1.48502 * 109.47279 * 324.54687 * 8 6 4 12 12 C 1.53007 * 109.46771 * 119.99716 * 2 1 3 13 13 N 1.46498 * 109.47038 * 300.00121 * 12 2 1 14 14 C 1.34781 * 119.99761 * 180.02562 * 13 12 2 15 15 O 1.21345 * 120.00206 * 359.97438 * 14 13 12 16 16 C 1.49451 * 119.99608 * 180.02562 * 14 13 12 17 17 O 1.21345 * 120.00186 * 359.97438 * 16 14 13 18 18 N 1.34781 * 119.99608 * 179.97438 * 16 14 13 19 19 C 1.46923 * 121.49593 * 179.97438 * 18 16 14 20 20 C 1.50905 * 108.94718 * 221.85684 * 19 18 16 21 21 C 1.38644 * 118.39760 * 168.72961 * 20 19 18 22 22 C 1.38047 * 120.34615 * 179.62841 * 21 20 19 23 23 C 1.38263 * 119.75495 * 359.95417 * 22 21 20 24 24 C 1.37970 * 119.91225 * 0.18540 * 23 22 21 25 25 C 1.37811 * 121.60781 * 348.66184 * 20 19 18 26 26 C 1.50600 * 122.33228 * 0.83610 * 25 20 19 27 27 O 1.42430 * 121.49835 * 359.71334 * 18 16 14 28 28 H 1.08996 * 109.47497 * 309.37339 * 1 2 3 29 29 H 1.09001 * 109.47000 * 69.37249 * 1 2 3 30 30 H 1.09006 * 109.47280 * 189.36834 * 1 2 3 31 31 H 1.09000 * 109.46973 * 179.97438 * 3 2 1 32 32 H 1.08996 * 109.46911 * 299.99432 * 3 2 1 33 33 H 1.08999 * 109.47521 * 59.99722 * 3 2 1 34 34 H 0.97002 * 120.00144 * 179.97438 * 7 6 4 35 35 H 1.08997 * 109.46780 * 180.02562 * 12 2 1 36 36 H 1.09003 * 109.47252 * 59.99932 * 12 2 1 37 37 H 0.96998 * 120.00050 * 359.97438 * 13 12 2 38 38 H 1.09002 * 109.55258 * 341.69790 * 19 18 16 39 39 H 1.09004 * 109.55841 * 101.90640 * 19 18 16 40 40 H 1.07998 * 119.83235 * 359.62758 * 21 20 19 41 41 H 1.07997 * 120.12325 * 179.97438 * 22 21 20 42 42 H 1.08001 * 120.03939 * 180.20811 * 23 22 21 43 43 H 1.08002 * 119.77130 * 180.02562 * 24 23 22 44 44 H 1.09004 * 109.20332 * 102.19032 * 26 25 20 45 45 H 1.09004 * 109.20668 * 221.52381 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6352 -1.6012 -1.1313 6 6 1.7224 -0.2235 -2.4825 7 7 1.9159 -0.9728 -3.5458 8 14 1.0277 1.5005 -2.6685 9 1 2.1418 2.4814 -2.7084 10 1 0.2471 1.5863 -3.9289 11 1 0.1418 1.8042 -1.5160 12 6 2.0399 -0.7212 1.2494 13 7 1.5515 -0.0306 2.4454 14 6 1.8775 -0.4907 3.6696 15 8 2.5751 -1.4773 3.7810 16 6 1.3787 0.2136 4.8898 17 8 0.6807 1.1999 4.7783 18 7 1.7043 -0.2469 6.1139 19 6 1.2327 0.4199 7.3353 20 6 2.3633 0.4706 8.3335 21 6 2.2124 1.2634 9.4609 22 6 3.2181 1.3334 10.4040 23 6 4.3809 0.6078 10.2223 24 6 4.5325 -0.1789 9.0990 25 6 3.5244 -0.2478 8.1469 26 6 3.7509 -1.1117 6.9342 27 8 2.5163 -1.4049 6.2817 28 1 -0.3634 0.6519 0.7944 29 1 -0.3633 0.3620 -0.9618 30 1 -0.3634 -1.0140 0.1673 31 1 3.1299 1.4424 0.0005 32 1 1.6767 1.9562 -0.8900 33 1 1.6766 1.9563 0.8899 34 1 1.6975 -0.6303 -4.4267 35 1 3.1299 -0.7208 1.2496 36 1 1.6765 -1.7489 1.2494 37 1 0.9942 0.7583 2.3564 38 1 0.9110 1.4336 7.0964 39 1 0.3967 -0.1385 7.7564 40 1 1.3034 1.8291 9.6021 41 1 3.0969 1.9524 11.2806 42 1 5.1693 0.6566 10.9588 43 1 5.4416 -0.7451 8.9596 44 1 4.4082 -0.5889 6.2393 45 1 4.2237 -2.0445 7.2417 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118040594.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:26:51 Heat of formation + Delta-G solvation = -7.900217 kcal Electronic energy + Delta-G solvation = -28470.272410 eV Core-core repulsion = 24456.213486 eV Total energy + Delta-G solvation = -4014.058924 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.91045 -39.95116 -38.48849 -37.58320 -36.73726 -34.16257 -33.33091 -32.37627 -31.51301 -31.37568 -27.69566 -26.48397 -26.34156 -26.03626 -25.00245 -23.36463 -22.79060 -21.10277 -19.87645 -19.40632 -18.59663 -17.38431 -16.91191 -16.73115 -16.31076 -16.03671 -15.49370 -15.28910 -15.24495 -14.94685 -14.78855 -14.52845 -14.17270 -13.91930 -13.83645 -13.60950 -13.06861 -12.89810 -12.72101 -12.62674 -12.61444 -12.22849 -12.02989 -11.98368 -11.56896 -11.52838 -11.34223 -10.81625 -10.47437 -10.32453 -10.17356 -10.06955 -9.53460 -9.43986 -9.16344 -9.11643 -9.08733 -8.69249 -8.68801 -8.46697 -6.15561 -4.13225 0.81480 0.87460 1.38278 1.50288 2.94259 3.23341 3.25426 3.32840 3.33384 3.39733 4.03115 4.15185 4.24609 4.35721 4.41224 4.60449 4.70862 4.86205 4.94628 4.98218 5.10394 5.14823 5.15306 5.23000 5.47445 5.50131 5.70674 5.73717 5.94430 6.00473 6.03576 6.04912 6.19513 6.35536 6.41723 6.46768 6.49775 6.59038 6.62249 6.68521 6.77991 6.92545 7.18494 7.35847 7.40613 7.70223 7.78530 8.27232 8.43829 8.88974 9.48236 10.97270 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.028842 B = 0.002447 C = 0.002375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.558101 B =11442.161222 C =11785.977680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.028 3.972 3 C -0.150 4.150 4 C -0.513 4.513 5 H 0.078 0.922 6 C 0.076 3.924 7 N -0.890 5.890 8 Si 0.884 3.116 9 H -0.285 1.285 10 H -0.305 1.305 11 H -0.248 1.248 12 C 0.140 3.860 13 N -0.690 5.690 14 C 0.499 3.501 15 O -0.503 6.503 16 C 0.530 3.470 17 O -0.506 6.506 18 N -0.462 5.462 19 C 0.148 3.852 20 C -0.094 4.094 21 C -0.108 4.108 22 C -0.115 4.115 23 C -0.116 4.116 24 C -0.109 4.109 25 C -0.107 4.107 26 C 0.068 3.932 27 O -0.101 6.101 28 H 0.024 0.976 29 H 0.057 0.943 30 H 0.048 0.952 31 H 0.054 0.946 32 H 0.043 0.957 33 H 0.031 0.969 34 H 0.265 0.735 35 H 0.068 0.932 36 H 0.070 0.930 37 H 0.408 0.592 38 H 0.118 0.882 39 H 0.096 0.904 40 H 0.129 0.871 41 H 0.127 0.873 42 H 0.126 0.874 43 H 0.127 0.873 44 H 0.079 0.921 45 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.831 4.641 28.181 28.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.027 3.973 3 C -0.207 4.207 4 C -0.551 4.551 5 H 0.096 0.904 6 C -0.127 4.127 7 N -0.527 5.527 8 Si 0.717 3.283 9 H -0.213 1.213 10 H -0.234 1.234 11 H -0.174 1.174 12 C 0.019 3.981 13 N -0.343 5.343 14 C 0.277 3.723 15 O -0.378 6.378 16 C 0.315 3.685 17 O -0.381 6.381 18 N -0.242 5.242 19 C 0.028 3.972 20 C -0.095 4.095 21 C -0.126 4.126 22 C -0.133 4.133 23 C -0.134 4.134 24 C -0.128 4.128 25 C -0.107 4.107 26 C -0.010 4.010 27 O -0.104 6.104 28 H 0.043 0.957 29 H 0.076 0.924 30 H 0.067 0.933 31 H 0.073 0.927 32 H 0.061 0.939 33 H 0.050 0.950 34 H 0.075 0.925 35 H 0.087 0.913 36 H 0.089 0.911 37 H 0.244 0.756 38 H 0.136 0.864 39 H 0.114 0.886 40 H 0.147 0.853 41 H 0.145 0.855 42 H 0.144 0.856 43 H 0.145 0.855 44 H 0.097 0.903 45 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 1.886 4.223 27.855 28.237 hybrid contribution -0.232 1.365 -0.066 1.386 sum 1.654 5.588 27.789 28.393 Atomic orbital electron populations 1.22321 0.97667 1.00029 1.00227 1.18742 0.92713 0.92336 0.93499 1.22382 1.01226 0.98266 0.98852 1.20677 1.34227 1.12347 0.87873 0.90440 1.24959 0.94616 0.97307 0.95774 1.69944 1.48059 1.35909 0.98739 0.87310 0.79426 0.85517 0.76092 1.21316 1.23371 1.17391 1.21713 0.98931 0.96061 0.81413 1.46188 1.51358 1.31698 1.05100 1.19611 0.82927 0.85461 0.84281 1.90780 1.36261 1.24649 1.86121 1.20675 0.80737 0.83662 0.83416 1.90799 1.37538 1.24994 1.84743 1.49869 1.45050 1.23982 1.05257 1.20897 0.94612 0.99674 0.81997 1.19632 0.95131 0.98129 0.96564 1.20982 0.99711 0.98488 0.93453 1.21142 0.93720 0.99359 0.99120 1.21132 0.97904 0.96768 0.97596 1.21048 0.98436 0.99465 0.93805 1.19982 0.94745 0.98910 0.97097 1.21991 0.87203 1.00689 0.91075 1.91030 1.28245 1.10532 1.80578 0.95688 0.92375 0.93271 0.92703 0.93890 0.94972 0.92522 0.91336 0.91137 0.75566 0.86422 0.88596 0.85304 0.85524 0.85610 0.85462 0.90333 0.85620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.00 7.53 37.16 0.28 -2.72 16 2 C 0.03 0.62 0.50 -155.66 -0.08 0.54 16 3 C -0.15 -3.09 7.52 37.15 0.28 -2.81 16 4 C -0.51 -13.65 8.62 -34.44 -0.30 -13.94 16 5 H 0.08 2.24 7.99 -52.49 -0.42 1.83 16 6 C 0.08 2.11 5.32 -17.82 -0.09 2.02 16 7 N -0.89 -26.46 13.96 55.43 0.77 -25.69 16 8 Si 0.88 21.14 22.79 -169.99 -3.87 17.26 16 9 H -0.29 -6.80 7.10 56.52 0.40 -6.40 16 10 H -0.31 -7.47 7.11 56.52 0.40 -7.06 16 11 H -0.25 -5.44 4.65 56.52 0.26 -5.17 16 12 C 0.14 2.78 4.49 -4.04 -0.02 2.76 16 13 N -0.69 -12.00 5.00 -60.73 -0.30 -12.30 16 14 C 0.50 8.61 7.88 -11.58 -0.09 8.51 16 15 O -0.50 -9.68 15.11 -16.40 -0.25 -9.93 16 16 C 0.53 8.13 7.89 -11.58 -0.09 8.04 16 17 O -0.51 -8.08 16.06 5.50 0.09 -7.99 16 18 N -0.46 -6.15 3.51 -61.51 -0.22 -6.36 16 19 C 0.15 1.47 6.44 -4.86 -0.03 1.44 16 20 C -0.09 -0.87 5.85 -104.53 -0.61 -1.49 16 21 C -0.11 -0.80 9.65 -39.50 -0.38 -1.18 16 22 C -0.12 -0.76 10.05 -39.64 -0.40 -1.16 16 23 C -0.12 -0.77 10.04 -39.67 -0.40 -1.17 16 24 C -0.11 -0.83 9.63 -39.46 -0.38 -1.21 16 25 C -0.11 -1.00 5.84 -104.60 -0.61 -1.62 16 26 C 0.07 0.69 6.91 35.96 0.25 0.94 16 27 O -0.10 -1.37 9.67 -33.77 -0.33 -1.70 16 28 H 0.02 0.44 7.13 -51.93 -0.37 0.07 16 29 H 0.06 1.27 4.30 -51.93 -0.22 1.05 16 30 H 0.05 0.99 8.12 -51.93 -0.42 0.57 16 31 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 32 H 0.04 0.93 2.25 -51.93 -0.12 0.82 16 33 H 0.03 0.56 6.86 -51.93 -0.36 0.21 16 34 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 35 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 36 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 37 H 0.41 6.70 5.73 -40.82 -0.23 6.47 16 38 H 0.12 1.11 7.25 -51.93 -0.38 0.73 16 39 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 41 H 0.13 0.55 8.06 -52.49 -0.42 0.12 16 42 H 0.13 0.56 8.06 -52.49 -0.42 0.13 16 43 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 44 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 45 H 0.13 0.96 8.13 -51.93 -0.42 0.54 16 LS Contribution 358.12 15.07 5.40 5.40 Total: -1.00 -31.95 358.12 -7.40 -39.35 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: -6.02 Total: 4.99 kcal Atomic # 6 Polarization: -0.36 SS G_CDS: -2.67 Total: -3.03 kcal Atomic # 7 Polarization: -44.61 SS G_CDS: 0.25 Total: -44.35 kcal Atomic # 8 Polarization: -19.13 SS G_CDS: -0.49 Total: -19.62 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -3.87 Total: 17.26 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.95 -7.40 -39.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118040594.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.448 kcal (2) G-P(sol) polarization free energy of solvation -31.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds