Wall clock time and date at job start Tue Mar 31 2020 16:26:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52993 * 109.47117 * 2 1 4 4 C 1.50702 * 109.47445 * 239.99449 * 2 1 3 5 5 H 1.08002 * 120.00127 * 241.35356 * 4 2 1 6 6 C 1.37878 * 119.99752 * 61.34940 * 4 2 1 7 7 N 1.31507 * 119.99813 * 193.97648 * 6 4 2 8 8 Si 1.86801 * 119.99917 * 13.97706 * 6 4 2 9 9 H 1.48496 * 109.47003 * 84.54914 * 8 6 4 10 10 H 1.48501 * 109.47160 * 204.54884 * 8 6 4 11 11 H 1.48502 * 109.47279 * 324.54687 * 8 6 4 12 12 C 1.53007 * 109.46771 * 119.99716 * 2 1 3 13 13 N 1.46498 * 109.47038 * 300.00121 * 12 2 1 14 14 C 1.34781 * 119.99761 * 180.02562 * 13 12 2 15 15 O 1.21345 * 120.00206 * 359.97438 * 14 13 12 16 16 C 1.49451 * 119.99608 * 180.02562 * 14 13 12 17 17 O 1.21345 * 120.00186 * 359.97438 * 16 14 13 18 18 N 1.34781 * 119.99608 * 179.97438 * 16 14 13 19 19 C 1.46923 * 121.49593 * 179.97438 * 18 16 14 20 20 C 1.50905 * 108.94718 * 221.85684 * 19 18 16 21 21 C 1.38644 * 118.39760 * 168.72961 * 20 19 18 22 22 C 1.38047 * 120.34615 * 179.62841 * 21 20 19 23 23 C 1.38263 * 119.75495 * 359.95417 * 22 21 20 24 24 C 1.37970 * 119.91225 * 0.18540 * 23 22 21 25 25 C 1.37811 * 121.60781 * 348.66184 * 20 19 18 26 26 C 1.50600 * 122.33228 * 0.83610 * 25 20 19 27 27 O 1.42430 * 121.49835 * 359.71334 * 18 16 14 28 28 H 1.08996 * 109.47497 * 309.37339 * 1 2 3 29 29 H 1.09001 * 109.47000 * 69.37249 * 1 2 3 30 30 H 1.09006 * 109.47280 * 189.36834 * 1 2 3 31 31 H 1.09000 * 109.46973 * 179.97438 * 3 2 1 32 32 H 1.08996 * 109.46911 * 299.99432 * 3 2 1 33 33 H 1.08999 * 109.47521 * 59.99722 * 3 2 1 34 34 H 0.97002 * 120.00144 * 179.97438 * 7 6 4 35 35 H 1.08997 * 109.46780 * 180.02562 * 12 2 1 36 36 H 1.09003 * 109.47252 * 59.99932 * 12 2 1 37 37 H 0.96998 * 120.00050 * 359.97438 * 13 12 2 38 38 H 1.09002 * 109.55258 * 341.69790 * 19 18 16 39 39 H 1.09004 * 109.55841 * 101.90640 * 19 18 16 40 40 H 1.07998 * 119.83235 * 359.62758 * 21 20 19 41 41 H 1.07997 * 120.12325 * 179.97438 * 22 21 20 42 42 H 1.08001 * 120.03939 * 180.20811 * 23 22 21 43 43 H 1.08002 * 119.77130 * 180.02562 * 24 23 22 44 44 H 1.09004 * 109.20332 * 102.19032 * 26 25 20 45 45 H 1.09004 * 109.20668 * 221.52381 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6352 -1.6012 -1.1313 6 6 1.7224 -0.2235 -2.4825 7 7 1.9159 -0.9728 -3.5458 8 14 1.0277 1.5005 -2.6685 9 1 2.1418 2.4814 -2.7084 10 1 0.2471 1.5863 -3.9289 11 1 0.1418 1.8042 -1.5160 12 6 2.0399 -0.7212 1.2494 13 7 1.5515 -0.0306 2.4454 14 6 1.8775 -0.4907 3.6696 15 8 2.5751 -1.4773 3.7810 16 6 1.3787 0.2136 4.8898 17 8 0.6807 1.1999 4.7783 18 7 1.7043 -0.2469 6.1139 19 6 1.2327 0.4199 7.3353 20 6 2.3633 0.4706 8.3335 21 6 2.2124 1.2634 9.4609 22 6 3.2181 1.3334 10.4040 23 6 4.3809 0.6078 10.2223 24 6 4.5325 -0.1789 9.0990 25 6 3.5244 -0.2478 8.1469 26 6 3.7509 -1.1117 6.9342 27 8 2.5163 -1.4049 6.2817 28 1 -0.3634 0.6519 0.7944 29 1 -0.3633 0.3620 -0.9618 30 1 -0.3634 -1.0140 0.1673 31 1 3.1299 1.4424 0.0005 32 1 1.6767 1.9562 -0.8900 33 1 1.6766 1.9563 0.8899 34 1 1.6975 -0.6303 -4.4267 35 1 3.1299 -0.7208 1.2496 36 1 1.6765 -1.7489 1.2494 37 1 0.9942 0.7583 2.3564 38 1 0.9110 1.4336 7.0964 39 1 0.3967 -0.1385 7.7564 40 1 1.3034 1.8291 9.6021 41 1 3.0969 1.9524 11.2806 42 1 5.1693 0.6566 10.9588 43 1 5.4416 -0.7451 8.9596 44 1 4.4082 -0.5889 6.2393 45 1 4.2237 -2.0445 7.2417 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118040594.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:26:49 Heat of formation + Delta-G solvation = -28.514167 kcal Electronic energy + Delta-G solvation = -28471.166298 eV Core-core repulsion = 24456.213486 eV Total energy + Delta-G solvation = -4014.952812 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.95879 -40.90036 -39.73534 -38.55533 -38.31378 -35.25028 -34.78632 -33.44135 -33.04656 -32.10767 -28.82143 -28.04272 -27.62048 -27.03719 -26.80607 -24.57158 -23.39936 -22.07880 -21.09233 -20.75334 -19.95998 -18.41356 -18.14539 -17.86157 -17.61752 -17.22392 -16.94566 -16.53045 -16.43027 -15.92085 -15.77091 -15.51495 -15.22805 -15.10909 -14.87688 -14.75996 -14.42062 -14.41532 -14.15440 -14.03144 -13.76936 -13.43063 -13.27917 -12.98110 -12.92060 -12.52610 -12.39483 -12.20453 -12.08203 -11.97106 -11.78272 -11.64185 -11.09530 -10.73718 -10.61917 -10.44669 -10.40129 -10.18045 -9.76051 -9.68225 -8.29787 -6.31140 0.16313 0.23857 0.34257 0.46708 1.37485 1.39001 1.50839 1.68630 2.02229 2.34985 2.68855 3.01997 3.06772 3.38320 3.55437 3.58515 3.85598 4.01690 4.18477 4.20968 4.28007 4.29346 4.33097 4.38568 4.41409 4.54591 4.64123 4.70249 4.79168 4.84181 4.88274 4.89350 4.90904 5.02504 5.04356 5.07936 5.29526 5.42927 5.47021 5.50039 5.53500 5.65719 5.71372 5.76747 5.98030 6.15146 6.29582 6.50209 6.72701 6.91583 7.33673 8.86865 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.028842 B = 0.002447 C = 0.002375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.558101 B =11442.161222 C =11785.977680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.027 3.973 3 C -0.150 4.150 4 C -0.514 4.514 5 H 0.035 0.965 6 C 0.020 3.980 7 N -0.943 5.943 8 Si 0.940 3.060 9 H -0.281 1.281 10 H -0.315 1.315 11 H -0.209 1.209 12 C 0.155 3.845 13 N -0.683 5.683 14 C 0.498 3.502 15 O -0.527 6.527 16 C 0.534 3.466 17 O -0.514 6.514 18 N -0.457 5.457 19 C 0.146 3.854 20 C -0.113 4.113 21 C -0.112 4.112 22 C -0.116 4.116 23 C -0.118 4.118 24 C -0.116 4.116 25 C -0.127 4.127 26 C 0.066 3.934 27 O -0.124 6.124 28 H 0.059 0.941 29 H 0.047 0.953 30 H 0.045 0.955 31 H 0.051 0.949 32 H 0.036 0.964 33 H 0.067 0.933 34 H 0.265 0.735 35 H 0.058 0.942 36 H 0.055 0.945 37 H 0.416 0.584 38 H 0.124 0.876 39 H 0.112 0.888 40 H 0.149 0.851 41 H 0.152 0.848 42 H 0.150 0.850 43 H 0.143 0.857 44 H 0.068 0.932 45 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.123 7.040 31.585 32.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.025 3.975 3 C -0.207 4.207 4 C -0.552 4.552 5 H 0.053 0.947 6 C -0.178 4.178 7 N -0.582 5.582 8 Si 0.770 3.230 9 H -0.209 1.209 10 H -0.244 1.244 11 H -0.133 1.133 12 C 0.032 3.968 13 N -0.337 5.337 14 C 0.278 3.722 15 O -0.404 6.404 16 C 0.317 3.683 17 O -0.390 6.390 18 N -0.236 5.236 19 C 0.027 3.973 20 C -0.113 4.113 21 C -0.130 4.130 22 C -0.134 4.134 23 C -0.136 4.136 24 C -0.134 4.134 25 C -0.128 4.128 26 C -0.012 4.012 27 O -0.127 6.127 28 H 0.078 0.922 29 H 0.066 0.934 30 H 0.064 0.936 31 H 0.071 0.929 32 H 0.054 0.946 33 H 0.086 0.914 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.074 0.926 37 H 0.254 0.746 38 H 0.142 0.858 39 H 0.129 0.871 40 H 0.167 0.833 41 H 0.170 0.830 42 H 0.167 0.833 43 H 0.161 0.839 44 H 0.086 0.914 45 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 1.177 6.631 31.330 32.046 hybrid contribution 0.101 0.487 -0.984 1.102 sum 1.278 7.118 30.346 31.196 Atomic orbital electron populations 1.22256 0.96232 1.00802 1.00876 1.18679 0.93746 0.93097 0.91930 1.22325 1.01280 0.96933 1.00151 1.20955 1.32954 1.11168 0.90143 0.94702 1.25792 0.95380 1.01320 0.95324 1.70094 1.50585 1.38147 0.99385 0.86391 0.79439 0.80329 0.76841 1.20866 1.24446 1.13255 1.21296 0.98197 0.95351 0.81939 1.45950 1.51496 1.31758 1.04495 1.20007 0.82231 0.85101 0.84845 1.90769 1.37230 1.25760 1.86593 1.20077 0.81132 0.83594 0.83447 1.90792 1.38107 1.25156 1.84977 1.49916 1.44432 1.23616 1.05609 1.21160 0.95474 0.99801 0.80817 1.19709 0.95007 0.99320 0.97293 1.21245 1.00846 0.98058 0.92828 1.21523 0.93233 0.99083 0.99573 1.21496 0.98628 0.95940 0.97560 1.21284 0.98575 0.99813 0.93708 1.20015 0.95777 0.99657 0.97341 1.22157 0.85716 1.02014 0.91266 1.90988 1.29580 1.10966 1.81191 0.92176 0.93406 0.93611 0.92947 0.94558 0.91408 0.92646 0.92385 0.92630 0.74614 0.85840 0.87073 0.83303 0.83003 0.83257 0.83886 0.91361 0.83557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.65 7.53 71.98 0.54 -5.11 16 2 C 0.03 1.14 0.50 -52.93 -0.03 1.11 16 3 C -0.15 -5.77 7.52 71.98 0.54 -5.23 16 4 C -0.51 -28.04 8.62 25.60 0.22 -27.81 16 5 H 0.03 2.13 7.99 -2.91 -0.02 2.11 16 6 C 0.02 1.11 5.32 84.66 0.45 1.56 16 7 N -0.94 -58.16 13.96 21.45 0.30 -57.86 16 8 Si 0.94 43.07 22.79 68.60 1.56 44.64 16 9 H -0.28 -12.63 7.10 99.48 0.71 -11.93 16 10 H -0.31 -14.87 7.11 99.48 0.71 -14.17 16 11 H -0.21 -8.24 4.65 99.48 0.46 -7.78 16 12 C 0.16 6.13 4.49 86.38 0.39 6.51 16 13 N -0.68 -22.80 5.00 -464.40 -2.32 -25.12 16 14 C 0.50 16.87 7.88 87.27 0.69 17.56 16 15 O -0.53 -20.42 15.11 17.71 0.27 -20.16 16 16 C 0.53 15.73 7.89 87.27 0.69 16.42 16 17 O -0.51 -15.41 16.06 -3.23 -0.05 -15.46 16 18 N -0.46 -11.73 3.51 -466.87 -1.64 -13.37 16 19 C 0.15 2.67 6.44 85.62 0.55 3.22 16 20 C -0.11 -1.90 5.85 -19.80 -0.12 -2.02 16 21 C -0.11 -1.35 9.65 22.32 0.22 -1.14 16 22 C -0.12 -1.15 10.05 22.23 0.22 -0.93 16 23 C -0.12 -1.22 10.04 22.21 0.22 -1.00 16 24 C -0.12 -1.52 9.63 22.35 0.22 -1.30 16 25 C -0.13 -2.23 5.84 -19.85 -0.12 -2.35 16 26 C 0.07 1.30 6.91 71.20 0.49 1.79 16 27 O -0.12 -3.33 9.67 -19.73 -0.19 -3.52 16 28 H 0.06 1.93 7.13 -2.39 -0.02 1.91 16 29 H 0.05 1.96 4.30 -2.39 -0.01 1.95 16 30 H 0.04 1.79 8.12 -2.38 -0.02 1.77 16 31 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.04 1.45 2.25 -2.39 -0.01 1.45 16 33 H 0.07 2.12 6.86 -2.39 -0.02 2.11 16 34 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 35 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 36 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 37 H 0.42 12.50 5.73 -92.71 -0.53 11.97 16 38 H 0.12 2.09 7.25 -2.39 -0.02 2.07 16 39 H 0.11 1.66 8.14 -2.38 -0.02 1.64 16 40 H 0.15 1.09 8.06 -2.91 -0.02 1.07 16 41 H 0.15 0.69 8.06 -2.91 -0.02 0.67 16 42 H 0.15 0.78 8.06 -2.91 -0.02 0.76 16 43 H 0.14 1.28 8.06 -2.91 -0.02 1.26 16 44 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 45 H 0.15 2.14 8.13 -2.38 -0.02 2.12 16 Total: -1.00 -71.13 358.12 3.37 -67.76 By element: Atomic # 1 Polarization: 21.53 SS G_CDS: 0.26 Total: 21.78 kcal Atomic # 6 Polarization: -3.88 SS G_CDS: 5.18 Total: 1.30 kcal Atomic # 7 Polarization: -92.69 SS G_CDS: -3.66 Total: -96.35 kcal Atomic # 8 Polarization: -39.16 SS G_CDS: 0.02 Total: -39.14 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 1.56 Total: 44.64 kcal Total: -71.13 3.37 -67.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118040594.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.247 kcal (2) G-P(sol) polarization free energy of solvation -71.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds