Wall clock time and date at job start Tue Mar 31 2020 16:25:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50695 * 120.00159 * 2 1 4 4 C 1.50704 * 119.99663 * 179.97438 * 2 1 3 5 5 N 1.46493 * 109.47242 * 94.99845 * 4 2 1 6 6 C 1.46494 * 120.00543 * 269.99884 * 5 4 2 7 7 C 1.34781 * 119.99727 * 89.99945 * 5 4 2 8 8 O 1.21348 * 120.00133 * 354.47764 * 7 5 4 9 9 C 1.49448 * 119.99834 * 174.47775 * 7 5 4 10 10 O 1.21350 * 120.00387 * 357.92090 * 9 7 5 11 11 N 1.34775 * 119.99732 * 177.92524 * 9 7 5 12 12 C 1.46501 * 119.99989 * 179.97438 * 11 9 7 13 13 C 1.50701 * 109.47396 * 180.02562 * 12 11 9 14 14 C 1.38329 * 119.96294 * 269.97998 * 13 12 11 15 15 C 1.38273 * 120.13743 * 180.02562 * 14 13 12 16 16 C 1.38124 * 120.06981 * 359.67864 * 15 14 13 17 17 C 1.38861 * 119.93030 * 0.59463 * 16 15 14 18 18 O 1.35752 * 120.06969 * 179.70011 * 17 16 15 19 19 C 1.34830 * 116.99905 * 356.88973 * 18 17 16 20 20 H 1.08000 * 120.00278 * 4.96103 * 19 18 17 21 21 C 1.38654 * 119.99718 * 184.96466 * 19 18 17 22 22 N 1.31555 * 119.99930 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00160 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.46812 * 59.99971 * 23 21 19 25 25 H 1.48495 * 109.47335 * 180.02562 * 23 21 19 26 26 H 1.48504 * 109.47078 * 300.00513 * 23 21 19 27 27 C 1.38076 * 119.97069 * 89.99673 * 13 12 11 28 28 H 1.08003 * 120.00428 * 179.97438 * 1 2 3 29 29 H 1.08002 * 119.99776 * 0.02562 * 1 2 3 30 30 H 1.09007 * 109.46919 * 269.99815 * 3 2 1 31 31 H 1.08996 * 109.47064 * 29.99514 * 3 2 1 32 32 H 1.08995 * 109.46979 * 149.99981 * 3 2 1 33 33 H 1.09006 * 109.46919 * 334.99848 * 4 2 1 34 34 H 1.09005 * 109.46594 * 215.00253 * 4 2 1 35 35 H 1.09002 * 109.47474 * 263.62566 * 6 5 4 36 36 H 1.09008 * 109.46966 * 23.62378 * 6 5 4 37 37 H 1.09002 * 109.47709 * 143.62262 * 6 5 4 38 38 H 0.97002 * 120.00718 * 359.97438 * 11 9 7 39 39 H 1.09003 * 109.47472 * 59.99863 * 12 11 9 40 40 H 1.09006 * 109.47101 * 299.99697 * 12 11 9 41 41 H 1.07998 * 119.92968 * 0.02562 * 14 13 12 42 42 H 1.08002 * 119.96583 * 179.97438 * 15 14 13 43 43 H 1.08001 * 120.03758 * 180.31803 * 16 15 14 44 44 H 0.97006 * 120.00163 * 180.02562 * 22 21 19 45 45 H 1.08004 * 120.03221 * 0.02562 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 2.0634 -1.3052 0.0006 5 7 2.4118 -1.6686 -1.3751 6 6 1.4915 -2.4822 -2.1734 7 6 3.5791 -1.2543 -1.9065 8 8 4.2953 -0.4986 -1.2832 9 6 3.9915 -1.7257 -3.2634 10 8 3.2937 -2.5109 -3.8710 11 7 5.1384 -1.2788 -3.8123 12 6 5.5429 -1.7413 -5.1422 13 6 6.8516 -1.0974 -5.5215 14 6 6.8576 0.1113 -6.1942 15 6 8.0562 0.7050 -6.5444 16 6 9.2519 0.0957 -6.2174 17 6 9.2493 -1.1205 -5.5472 18 8 10.4227 -1.7248 -5.2299 19 6 11.5540 -1.1239 -5.6505 20 1 11.5047 -0.1638 -6.1427 21 6 12.7808 -1.7386 -5.4513 22 7 12.8408 -2.9083 -4.8523 23 14 14.3482 -0.9065 -6.0347 24 1 14.4917 0.4080 -5.3590 25 1 15.5155 -1.7631 -5.7051 26 1 14.2832 -0.7032 -7.5043 27 6 8.0435 -1.7146 -5.1975 28 1 -0.5401 -0.9353 -0.0004 29 1 -0.5400 0.9353 -0.0004 30 1 2.2452 1.6197 -1.0277 31 1 1.4744 2.0647 0.5137 32 1 3.0159 1.1747 0.5138 33 1 1.4384 -2.0853 0.4353 34 1 2.9741 -1.1986 0.5901 35 1 1.7917 -3.5287 -2.1197 36 1 0.4793 -2.3741 -1.7834 37 1 1.5186 -2.1493 -3.2109 38 1 5.6961 -0.6509 -3.3268 39 1 4.7788 -1.4681 -5.8700 40 1 5.6618 -2.8248 -5.1295 41 1 5.9240 0.5922 -6.4463 42 1 8.0576 1.6485 -7.0699 43 1 10.1879 0.5624 -6.4867 44 1 13.6991 -3.3382 -4.7125 45 1 8.0382 -2.6587 -4.6729 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118742795.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:25:10 Heat of formation + Delta-G solvation = -41.823314 kcal Electronic energy + Delta-G solvation = -27303.200326 eV Core-core repulsion = 23287.670387 eV Total energy + Delta-G solvation = -4015.529940 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 2.00 seconds Orbital eigenvalues (eV) -40.91729 -39.29232 -38.66666 -37.01417 -36.80997 -35.03663 -34.12983 -32.35055 -30.91181 -29.20647 -28.25453 -27.66138 -27.09088 -25.97974 -25.19564 -23.01451 -21.73656 -20.87008 -20.28905 -18.91448 -18.17798 -17.53219 -17.15739 -16.92421 -16.37525 -15.84158 -15.45337 -15.23392 -15.10113 -14.65946 -14.48474 -14.32019 -14.00195 -13.90898 -13.64467 -13.46020 -13.31104 -13.12478 -12.81446 -12.69320 -12.46169 -12.22626 -12.03765 -11.98529 -11.70009 -11.62406 -11.40503 -11.35858 -10.93245 -10.86802 -10.73739 -10.50580 -9.75140 -9.43469 -9.37972 -9.23883 -9.00035 -8.90003 -8.27817 -7.34898 -6.50107 -4.09660 1.33764 1.59284 1.85572 2.24433 2.53370 3.10304 3.11042 3.11627 3.14285 3.48176 3.91844 4.26906 4.46160 4.49410 4.54442 4.86541 4.92099 5.00515 5.04777 5.19640 5.21273 5.35070 5.40640 5.48170 5.48655 5.56871 5.64920 5.67928 5.76545 5.78402 5.83736 6.02301 6.04991 6.20871 6.21900 6.25376 6.46218 6.51832 6.77039 6.78877 6.96726 7.13867 7.19220 7.26039 7.33776 7.61768 7.68427 7.92871 7.93763 8.94969 9.63103 10.67440 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.019629 B = 0.002095 C = 0.002062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.152458 B =13361.232485 C =13575.536364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.139 4.139 3 C -0.115 4.115 4 C 0.146 3.854 5 N -0.586 5.586 6 C 0.078 3.922 7 C 0.506 3.494 8 O -0.512 6.512 9 C 0.504 3.496 10 O -0.523 6.523 11 N -0.687 5.687 12 C 0.167 3.833 13 C -0.077 4.077 14 C -0.194 4.194 15 C -0.075 4.075 16 C -0.224 4.224 17 C 0.150 3.850 18 O -0.174 6.174 19 C -0.394 4.394 20 H 0.092 0.908 21 C 0.040 3.960 22 N -0.860 5.860 23 Si 0.942 3.058 24 H -0.269 1.269 25 H -0.278 1.278 26 H -0.270 1.270 27 C -0.169 4.169 28 H 0.097 0.903 29 H 0.099 0.901 30 H 0.065 0.935 31 H 0.060 0.940 32 H 0.070 0.930 33 H 0.088 0.912 34 H 0.093 0.907 35 H 0.063 0.937 36 H 0.064 0.936 37 H 0.095 0.905 38 H 0.416 0.584 39 H 0.079 0.921 40 H 0.080 0.920 41 H 0.107 0.893 42 H 0.110 0.890 43 H 0.128 0.872 44 H 0.271 0.729 45 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.148 4.463 6.196 23.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.141 4.141 3 C -0.171 4.171 4 C 0.024 3.976 5 N -0.320 5.320 6 C -0.064 4.064 7 C 0.288 3.712 8 O -0.387 6.387 9 C 0.284 3.716 10 O -0.400 6.400 11 N -0.339 5.339 12 C 0.045 3.955 13 C -0.078 4.078 14 C -0.213 4.213 15 C -0.094 4.094 16 C -0.244 4.244 17 C 0.096 3.904 18 O -0.078 6.078 19 C -0.470 4.470 20 H 0.110 0.890 21 C -0.165 4.165 22 N -0.495 5.495 23 Si 0.766 3.234 24 H -0.195 1.195 25 H -0.202 1.202 26 H -0.195 1.195 27 C -0.189 4.189 28 H 0.116 0.884 29 H 0.118 0.882 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.089 0.911 33 H 0.106 0.894 34 H 0.111 0.889 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.113 0.887 38 H 0.252 0.748 39 H 0.097 0.903 40 H 0.098 0.902 41 H 0.125 0.875 42 H 0.128 0.872 43 H 0.146 0.854 44 H 0.081 0.919 45 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -21.987 3.891 6.282 23.196 hybrid contribution 1.016 0.724 -0.157 1.257 sum -20.971 4.615 6.126 22.329 Atomic orbital electron populations 1.23756 0.95048 1.02006 1.01151 1.22131 0.95554 0.96374 0.99996 1.20811 1.00286 0.93702 1.02327 1.20647 1.00596 0.93988 0.82334 1.47706 1.18444 1.51692 1.14162 1.22183 0.91807 0.95272 0.97157 1.20275 0.81979 0.81653 0.87259 1.90772 1.52500 1.33577 1.61866 1.20012 0.82446 0.82431 0.86664 1.90711 1.52125 1.33996 1.63196 1.46005 1.22254 1.46383 1.19251 1.20306 0.93791 0.99064 0.82367 1.19191 0.92511 0.95702 1.00346 1.20470 0.97326 0.97054 1.06482 1.20744 0.92155 0.98469 0.98009 1.21256 0.98710 0.97804 1.06588 1.19315 0.87560 0.91257 0.92275 1.83986 1.10806 1.46960 1.66012 1.21281 0.81845 1.04179 1.39705 0.89041 1.25304 0.98643 0.95900 0.96622 1.70027 1.26534 1.14353 1.38552 0.85770 0.79567 0.78818 0.79227 1.19450 1.20239 1.19464 1.20075 0.89593 1.01879 1.07326 0.88432 0.88223 0.91651 0.92149 0.91136 0.89368 0.88897 0.91821 0.91712 0.88697 0.74775 0.90303 0.90199 0.87456 0.87206 0.85387 0.91867 0.86323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.22 13.89 29.01 0.40 -0.82 16 2 C -0.14 -1.15 5.63 -101.07 -0.57 -1.72 16 3 C -0.11 -1.02 9.65 36.00 0.35 -0.67 16 4 C 0.15 1.23 5.49 -5.20 -0.03 1.21 16 5 N -0.59 -5.99 2.86 -183.46 -0.52 -6.51 16 6 C 0.08 0.66 9.24 59.84 0.55 1.22 16 7 C 0.51 6.48 7.72 -11.58 -0.09 6.39 16 8 O -0.51 -7.49 15.73 5.50 0.09 -7.41 16 9 C 0.50 6.80 7.75 -11.59 -0.09 6.72 16 10 O -0.52 -7.49 13.31 5.50 0.07 -7.42 16 11 N -0.69 -9.37 5.54 -61.90 -0.34 -9.71 16 12 C 0.17 2.34 5.80 -5.19 -0.03 2.31 16 13 C -0.08 -1.28 5.25 -104.65 -0.55 -1.83 16 14 C -0.19 -3.14 9.70 -39.53 -0.38 -3.52 16 15 C -0.08 -1.31 10.04 -39.61 -0.40 -1.71 16 16 C -0.22 -4.67 9.17 -39.39 -0.36 -5.03 16 17 C 0.15 3.50 6.65 -39.11 -0.26 3.23 16 18 O -0.17 -4.86 9.76 0.04 0.00 -4.86 16 19 C -0.39 -10.78 9.48 30.89 0.29 -10.49 16 20 H 0.09 2.30 5.20 -52.49 -0.27 2.03 16 21 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 22 N -0.86 -24.91 13.67 55.48 0.76 -24.15 16 23 Si 0.94 20.19 29.55 -169.99 -5.02 15.16 16 24 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 25 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 26 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 27 C -0.17 -3.40 9.64 -39.40 -0.38 -3.78 16 28 H 0.10 0.53 7.99 -52.48 -0.42 0.11 16 29 H 0.10 0.61 8.04 -52.49 -0.42 0.18 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.06 0.45 8.06 -51.93 -0.42 0.03 16 32 H 0.07 0.69 8.08 -51.93 -0.42 0.27 16 33 H 0.09 0.54 7.92 -51.93 -0.41 0.13 16 34 H 0.09 0.87 7.46 -51.93 -0.39 0.49 16 35 H 0.06 0.55 8.11 -51.93 -0.42 0.12 16 36 H 0.06 0.40 8.02 -51.92 -0.42 -0.02 16 37 H 0.09 0.95 5.93 -51.93 -0.31 0.64 16 38 H 0.42 5.74 7.94 -40.82 -0.32 5.42 16 39 H 0.08 1.02 8.09 -51.93 -0.42 0.60 16 40 H 0.08 1.13 8.08 -51.93 -0.42 0.71 16 41 H 0.11 1.47 8.06 -52.49 -0.42 1.05 16 42 H 0.11 1.60 8.06 -52.49 -0.42 1.17 16 43 H 0.13 2.67 5.62 -52.49 -0.30 2.38 16 44 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 45 H 0.12 2.35 8.06 -52.48 -0.42 1.93 16 LS Contribution 387.48 15.07 5.84 5.84 Total: -1.00 -31.08 387.48 -6.95 -38.03 By element: Atomic # 1 Polarization: 14.72 SS G_CDS: -6.18 Total: 8.54 kcal Atomic # 6 Polarization: -5.87 SS G_CDS: -1.64 Total: -7.51 kcal Atomic # 7 Polarization: -40.27 SS G_CDS: -0.11 Total: -40.37 kcal Atomic # 8 Polarization: -19.85 SS G_CDS: 0.16 Total: -19.69 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.16 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -31.08 -6.95 -38.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118742795.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.794 kcal (2) G-P(sol) polarization free energy of solvation -31.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.00 seconds