Wall clock time and date at job start Tue Mar 31 2020 16:25:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50695 * 120.00159 * 2 1 4 4 C 1.50704 * 119.99663 * 179.97438 * 2 1 3 5 5 N 1.46493 * 109.47242 * 94.99845 * 4 2 1 6 6 C 1.46494 * 120.00543 * 269.99884 * 5 4 2 7 7 C 1.34781 * 119.99727 * 89.99945 * 5 4 2 8 8 O 1.21348 * 120.00133 * 354.47764 * 7 5 4 9 9 C 1.49448 * 119.99834 * 174.47775 * 7 5 4 10 10 O 1.21350 * 120.00387 * 357.92090 * 9 7 5 11 11 N 1.34775 * 119.99732 * 177.92524 * 9 7 5 12 12 C 1.46501 * 119.99989 * 179.97438 * 11 9 7 13 13 C 1.50701 * 109.47396 * 180.02562 * 12 11 9 14 14 C 1.38329 * 119.96294 * 269.97998 * 13 12 11 15 15 C 1.38273 * 120.13743 * 180.02562 * 14 13 12 16 16 C 1.38124 * 120.06981 * 359.67864 * 15 14 13 17 17 C 1.38861 * 119.93030 * 0.59463 * 16 15 14 18 18 O 1.35752 * 120.06969 * 179.70011 * 17 16 15 19 19 C 1.34830 * 116.99905 * 356.88973 * 18 17 16 20 20 H 1.08000 * 120.00278 * 4.96103 * 19 18 17 21 21 C 1.38654 * 119.99718 * 184.96466 * 19 18 17 22 22 N 1.31555 * 119.99930 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00160 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.46812 * 59.99971 * 23 21 19 25 25 H 1.48495 * 109.47335 * 180.02562 * 23 21 19 26 26 H 1.48504 * 109.47078 * 300.00513 * 23 21 19 27 27 C 1.38076 * 119.97069 * 89.99673 * 13 12 11 28 28 H 1.08003 * 120.00428 * 179.97438 * 1 2 3 29 29 H 1.08002 * 119.99776 * 0.02562 * 1 2 3 30 30 H 1.09007 * 109.46919 * 269.99815 * 3 2 1 31 31 H 1.08996 * 109.47064 * 29.99514 * 3 2 1 32 32 H 1.08995 * 109.46979 * 149.99981 * 3 2 1 33 33 H 1.09006 * 109.46919 * 334.99848 * 4 2 1 34 34 H 1.09005 * 109.46594 * 215.00253 * 4 2 1 35 35 H 1.09002 * 109.47474 * 263.62566 * 6 5 4 36 36 H 1.09008 * 109.46966 * 23.62378 * 6 5 4 37 37 H 1.09002 * 109.47709 * 143.62262 * 6 5 4 38 38 H 0.97002 * 120.00718 * 359.97438 * 11 9 7 39 39 H 1.09003 * 109.47472 * 59.99863 * 12 11 9 40 40 H 1.09006 * 109.47101 * 299.99697 * 12 11 9 41 41 H 1.07998 * 119.92968 * 0.02562 * 14 13 12 42 42 H 1.08002 * 119.96583 * 179.97438 * 15 14 13 43 43 H 1.08001 * 120.03758 * 180.31803 * 16 15 14 44 44 H 0.97006 * 120.00163 * 180.02562 * 22 21 19 45 45 H 1.08004 * 120.03221 * 0.02562 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 2.0634 -1.3052 0.0006 5 7 2.4118 -1.6686 -1.3751 6 6 1.4915 -2.4822 -2.1734 7 6 3.5791 -1.2543 -1.9065 8 8 4.2953 -0.4986 -1.2832 9 6 3.9915 -1.7257 -3.2634 10 8 3.2937 -2.5109 -3.8710 11 7 5.1384 -1.2788 -3.8123 12 6 5.5429 -1.7413 -5.1422 13 6 6.8516 -1.0974 -5.5215 14 6 6.8576 0.1113 -6.1942 15 6 8.0562 0.7050 -6.5444 16 6 9.2519 0.0957 -6.2174 17 6 9.2493 -1.1205 -5.5472 18 8 10.4227 -1.7248 -5.2299 19 6 11.5540 -1.1239 -5.6505 20 1 11.5047 -0.1638 -6.1427 21 6 12.7808 -1.7386 -5.4513 22 7 12.8408 -2.9083 -4.8523 23 14 14.3482 -0.9065 -6.0347 24 1 14.4917 0.4080 -5.3590 25 1 15.5155 -1.7631 -5.7051 26 1 14.2832 -0.7032 -7.5043 27 6 8.0435 -1.7146 -5.1975 28 1 -0.5401 -0.9353 -0.0004 29 1 -0.5400 0.9353 -0.0004 30 1 2.2452 1.6197 -1.0277 31 1 1.4744 2.0647 0.5137 32 1 3.0159 1.1747 0.5138 33 1 1.4384 -2.0853 0.4353 34 1 2.9741 -1.1986 0.5901 35 1 1.7917 -3.5287 -2.1197 36 1 0.4793 -2.3741 -1.7834 37 1 1.5186 -2.1493 -3.2109 38 1 5.6961 -0.6509 -3.3268 39 1 4.7788 -1.4681 -5.8700 40 1 5.6618 -2.8248 -5.1295 41 1 5.9240 0.5922 -6.4463 42 1 8.0576 1.6485 -7.0699 43 1 10.1879 0.5624 -6.4867 44 1 13.6991 -3.3382 -4.7125 45 1 8.0382 -2.6587 -4.6729 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118742795.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:25:08 Heat of formation + Delta-G solvation = -61.913285 kcal Electronic energy + Delta-G solvation = -27304.071493 eV Core-core repulsion = 23287.670387 eV Total energy + Delta-G solvation = -4016.401106 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.91954 -40.86004 -39.78521 -38.49088 -37.77060 -36.09074 -35.03785 -34.29381 -32.31511 -30.81550 -29.00870 -28.35359 -28.09036 -27.41479 -26.72465 -24.05368 -23.26846 -22.40497 -21.30950 -19.78526 -19.44959 -19.02290 -18.51540 -18.07252 -17.32167 -16.88083 -16.75379 -16.52306 -16.27385 -16.05974 -15.84563 -15.51878 -15.35918 -14.94948 -14.87475 -14.63116 -14.33780 -14.06341 -13.97080 -13.92313 -13.71131 -13.51497 -13.32480 -13.01477 -12.74873 -12.63765 -12.52202 -12.42898 -12.38395 -12.28858 -12.15316 -12.13335 -11.22989 -10.82190 -10.65361 -10.34860 -10.08520 -9.83001 -9.76597 -9.04744 -8.47707 -6.16347 0.30980 0.31969 0.69132 0.99580 1.35042 1.45284 1.51257 1.61825 2.09254 2.17073 2.51952 2.84262 3.13766 3.33095 3.35847 3.78122 3.85923 3.89458 4.07296 4.27947 4.28460 4.37976 4.42177 4.49983 4.57142 4.59986 4.69250 4.71172 4.73160 4.79622 4.93747 4.99216 5.01918 5.10197 5.10574 5.16894 5.23826 5.30996 5.59828 5.64161 5.67884 5.69741 5.81474 5.91750 6.00519 6.14077 6.19249 6.61450 6.88596 6.96796 7.76764 8.75114 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.019629 B = 0.002095 C = 0.002062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.152458 B =13361.232485 C =13575.536364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.164 4.164 3 C -0.111 4.111 4 C 0.143 3.857 5 N -0.578 5.578 6 C 0.077 3.923 7 C 0.501 3.499 8 O -0.539 6.539 9 C 0.506 3.494 10 O -0.530 6.530 11 N -0.688 5.688 12 C 0.173 3.827 13 C -0.064 4.064 14 C -0.168 4.168 15 C -0.071 4.071 16 C -0.234 4.234 17 C 0.110 3.890 18 O -0.231 6.231 19 C -0.414 4.414 20 H 0.104 0.896 21 C -0.024 4.024 22 N -0.920 5.920 23 Si 1.019 2.981 24 H -0.257 1.257 25 H -0.273 1.273 26 H -0.256 1.256 27 C -0.181 4.181 28 H 0.118 0.882 29 H 0.107 0.893 30 H 0.048 0.952 31 H 0.073 0.927 32 H 0.052 0.948 33 H 0.118 0.882 34 H 0.077 0.923 35 H 0.064 0.936 36 H 0.096 0.904 37 H 0.081 0.919 38 H 0.415 0.585 39 H 0.102 0.898 40 H 0.077 0.923 41 H 0.150 0.850 42 H 0.150 0.850 43 H 0.121 0.879 44 H 0.272 0.728 45 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.472 6.210 5.467 26.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.165 4.165 3 C -0.168 4.168 4 C 0.023 3.977 5 N -0.310 5.310 6 C -0.064 4.064 7 C 0.283 3.717 8 O -0.417 6.417 9 C 0.287 3.713 10 O -0.408 6.408 11 N -0.340 5.340 12 C 0.051 3.949 13 C -0.064 4.064 14 C -0.186 4.186 15 C -0.088 4.088 16 C -0.253 4.253 17 C 0.060 3.940 18 O -0.138 6.138 19 C -0.490 4.490 20 H 0.121 0.879 21 C -0.221 4.221 22 N -0.558 5.558 23 Si 0.838 3.162 24 H -0.181 1.181 25 H -0.198 1.198 26 H -0.181 1.181 27 C -0.201 4.201 28 H 0.136 0.864 29 H 0.126 0.874 30 H 0.067 0.933 31 H 0.092 0.908 32 H 0.071 0.929 33 H 0.136 0.864 34 H 0.095 0.905 35 H 0.082 0.918 36 H 0.114 0.886 37 H 0.100 0.900 38 H 0.251 0.749 39 H 0.120 0.880 40 H 0.095 0.905 41 H 0.168 0.832 42 H 0.167 0.833 43 H 0.139 0.861 44 H 0.081 0.919 45 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -25.402 5.655 5.546 26.608 hybrid contribution 1.581 0.258 0.067 1.603 sum -23.821 5.913 5.612 25.177 Atomic orbital electron populations 1.23991 0.94343 1.03375 0.97949 1.22048 0.96144 0.95606 1.02720 1.20752 0.99977 0.94923 1.01176 1.20819 1.00572 0.95283 0.81064 1.47868 1.17579 1.50668 1.14900 1.22262 0.92963 0.94790 0.96429 1.20196 0.82760 0.81788 0.86913 1.90765 1.53539 1.35011 1.62373 1.20158 0.82130 0.82124 0.86925 1.90712 1.52321 1.34257 1.63504 1.45943 1.22452 1.46494 1.19137 1.20266 0.92734 0.98750 0.83152 1.19438 0.92331 0.95667 0.98993 1.21027 0.98677 0.95798 1.03148 1.21176 0.90964 0.99565 0.97138 1.21395 1.00164 0.97165 1.06596 1.19876 0.87283 0.92749 0.94093 1.83951 1.12088 1.48915 1.68833 1.21792 0.82465 1.04844 1.39887 0.87889 1.26605 1.02283 0.96591 0.96667 1.70182 1.27402 1.16683 1.41582 0.84648 0.74459 0.77900 0.79226 1.18131 1.19797 1.18064 1.20247 0.90101 1.02018 1.07718 0.86435 0.87437 0.93336 0.90785 0.92853 0.86403 0.90462 0.91787 0.88577 0.90018 0.74908 0.87957 0.90497 0.83191 0.83280 0.86094 0.91860 0.87303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.59 13.89 67.78 0.94 -0.65 16 2 C -0.16 -2.39 5.63 -16.49 -0.09 -2.48 16 3 C -0.11 -1.93 9.65 71.23 0.69 -1.24 16 4 C 0.14 2.17 5.49 85.64 0.47 2.64 16 5 N -0.58 -10.87 2.86 -852.72 -2.44 -13.31 16 6 C 0.08 1.12 9.24 127.77 1.18 2.30 16 7 C 0.50 12.51 7.72 87.27 0.67 13.18 16 8 O -0.54 -15.91 15.73 -3.24 -0.05 -15.96 16 9 C 0.51 13.06 7.75 87.27 0.68 13.74 16 10 O -0.53 -14.32 13.31 -3.25 -0.04 -14.36 16 11 N -0.69 -17.87 5.54 -468.13 -2.59 -20.47 16 12 C 0.17 4.48 5.80 85.63 0.50 4.98 16 13 C -0.06 -2.01 5.25 -19.88 -0.10 -2.12 16 14 C -0.17 -4.77 9.70 22.30 0.22 -4.55 16 15 C -0.07 -2.24 10.04 22.25 0.22 -2.02 16 16 C -0.23 -9.74 9.17 22.39 0.21 -9.54 16 17 C 0.11 5.36 6.65 22.58 0.15 5.51 16 18 O -0.23 -13.80 9.76 -22.76 -0.22 -14.02 16 19 C -0.41 -23.87 9.48 67.92 0.64 -23.22 16 20 H 0.10 5.39 5.20 -2.91 -0.02 5.38 16 21 C -0.02 -1.36 5.49 84.83 0.47 -0.89 16 22 N -0.92 -56.57 13.67 21.61 0.30 -56.28 16 23 Si 1.02 42.60 29.55 68.60 2.03 44.63 16 24 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16 25 H -0.27 -11.06 7.11 99.48 0.71 -10.36 16 26 H -0.26 -10.02 7.11 99.48 0.71 -9.32 16 27 C -0.18 -7.47 9.64 22.39 0.22 -7.26 16 28 H 0.12 0.72 7.99 -2.91 -0.02 0.70 16 29 H 0.11 0.93 8.04 -2.91 -0.02 0.91 16 30 H 0.05 0.97 8.14 -2.38 -0.02 0.95 16 31 H 0.07 1.01 8.06 -2.39 -0.02 0.99 16 32 H 0.05 1.08 8.08 -2.39 -0.02 1.06 16 33 H 0.12 1.06 7.92 -2.38 -0.02 1.04 16 34 H 0.08 1.43 7.46 -2.38 -0.02 1.41 16 35 H 0.06 0.95 8.11 -2.39 -0.02 0.93 16 36 H 0.10 0.80 8.02 -2.38 -0.02 0.78 16 37 H 0.08 1.46 5.93 -2.39 -0.01 1.44 16 38 H 0.41 11.14 7.94 -92.71 -0.74 10.40 16 39 H 0.10 2.24 8.09 -2.39 -0.02 2.22 16 40 H 0.08 2.08 8.08 -2.38 -0.02 2.06 16 41 H 0.15 3.16 8.06 -2.91 -0.02 3.14 16 42 H 0.15 3.61 8.06 -2.91 -0.02 3.59 16 43 H 0.12 5.13 5.62 -2.91 -0.02 5.11 16 44 H 0.27 15.39 8.31 -92.70 -0.77 14.62 16 45 H 0.11 4.60 8.06 -2.91 -0.02 4.57 16 Total: -1.00 -73.42 387.48 4.31 -69.11 By element: Atomic # 1 Polarization: 31.97 SS G_CDS: 0.28 Total: 32.25 kcal Atomic # 6 Polarization: -18.66 SS G_CDS: 7.05 Total: -11.61 kcal Atomic # 7 Polarization: -85.31 SS G_CDS: -4.73 Total: -90.05 kcal Atomic # 8 Polarization: -44.02 SS G_CDS: -0.32 Total: -44.33 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.63 kcal Total: -73.42 4.31 -69.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118742795.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.198 kcal (2) G-P(sol) polarization free energy of solvation -73.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds