Wall clock time and date at job start Tue Mar 31 2020 17:10:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53009 * 109.47137 * 2 1 4 4 C 1.53006 * 109.47471 * 119.99842 * 2 1 3 5 5 O 1.42897 * 109.46722 * 64.99810 * 4 2 1 6 6 C 1.35891 * 116.99781 * 180.02562 * 5 4 2 7 7 C 1.38794 * 120.02767 * 0.02562 * 6 5 4 8 8 C 1.38156 * 120.05698 * 179.97438 * 7 6 5 9 9 C 1.38201 * 120.10800 * 0.02562 * 8 7 6 10 10 C 1.38749 * 120.05348 * 359.95405 * 9 8 7 11 11 O 1.35903 * 120.02710 * 180.02562 * 10 9 8 12 12 C 1.42900 * 117.00035 * 359.97438 * 11 10 9 13 13 C 1.50694 * 109.47239 * 179.97438 * 12 11 10 14 14 O 1.21295 * 119.99939 * 0.02562 * 13 12 11 15 15 N 1.34779 * 120.00191 * 180.02562 * 13 12 11 16 16 C 1.37093 * 120.00191 * 180.02562 * 15 13 12 17 17 H 1.08000 * 119.99759 * 322.47357 * 16 15 13 18 18 C 1.38946 * 120.00104 * 142.47824 * 16 15 13 19 19 N 1.31415 * 119.99821 * 157.59047 * 18 16 15 20 20 Si 1.86793 * 120.00007 * 337.58547 * 18 16 15 21 21 H 1.48507 * 109.47302 * 95.71045 * 20 18 16 22 22 H 1.48506 * 109.47221 * 215.70598 * 20 18 16 23 23 H 1.48494 * 109.47372 * 335.71027 * 20 18 16 24 24 C 1.46499 * 119.99725 * 359.97438 * 15 13 12 25 25 C 1.47208 * 109.46715 * 83.80230 * 24 15 13 26 26 N 9.19489 * 137.95993 * 149.23316 * 5 1 2 27 27 C 1.38622 * 120.02864 * 179.72581 * 6 5 4 28 28 H 1.08991 * 109.46622 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.46694 * 300.00087 * 1 2 3 30 30 H 1.08997 * 109.46986 * 60.00292 * 1 2 3 31 31 H 1.09002 * 109.47164 * 239.99891 * 2 1 3 32 32 H 1.08993 * 109.47202 * 59.99621 * 3 2 1 33 33 H 1.08996 * 109.46974 * 180.02562 * 3 2 1 34 34 H 1.09000 * 109.46753 * 300.00224 * 3 2 1 35 35 H 1.08993 * 109.47335 * 185.00150 * 4 2 1 36 36 H 1.09000 * 109.46728 * 305.00025 * 4 2 1 37 37 H 1.08002 * 119.97516 * 359.97438 * 7 6 5 38 38 H 1.07998 * 119.94997 * 179.97438 * 8 7 6 39 39 H 1.08000 * 119.97219 * 179.97438 * 9 8 7 40 40 H 1.08997 * 109.47184 * 300.00789 * 12 11 10 41 41 H 1.09007 * 109.46920 * 60.00181 * 12 11 10 42 42 H 0.97006 * 119.99632 * 179.97438 * 19 18 16 43 43 H 1.08996 * 109.47039 * 203.79575 * 24 15 13 44 44 H 1.08997 * 109.47264 * 323.80401 * 24 15 13 45 45 H 1.07996 * 120.05268 * 0.02562 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 6 2.0401 -0.7212 1.2493 5 8 1.6621 -2.0981 1.1920 6 6 2.0398 -2.8853 2.2333 7 6 2.7593 -2.3428 3.2889 8 6 3.1432 -3.1425 4.3481 9 6 2.8124 -4.4843 4.3592 10 6 2.0928 -5.0313 3.3065 11 8 1.7673 -6.3507 3.3182 12 6 2.1988 -7.1154 4.4456 13 6 1.7495 -8.5447 4.2849 14 8 1.1218 -8.8762 3.3013 15 7 2.0450 -9.4549 5.2340 16 6 1.6367 -10.7554 5.0875 17 1 0.6735 -10.9729 4.6500 18 6 2.4619 -11.7936 5.5019 19 7 1.9477 -12.9704 5.7806 20 14 4.3022 -11.5166 5.6628 21 1 4.6315 -11.1848 7.0723 22 1 5.0253 -12.7504 5.2627 23 1 4.7128 -10.3943 4.7812 24 6 2.8036 -9.0547 6.4217 25 6 1.8858 -8.4825 7.4202 26 7 1.1784 -8.0413 8.1914 27 6 1.7014 -4.2295 2.2451 28 1 -0.3632 -1.0276 0.0005 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 1.6767 1.9564 0.8899 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9564 -0.8900 35 1 3.1264 -0.6443 1.2952 36 1 1.6055 -0.2617 2.1370 37 1 3.0195 -1.2946 3.2823 38 1 3.7034 -2.7186 5.1683 39 1 3.1139 -5.1075 5.1881 40 1 3.2862 -7.0812 4.5131 41 1 1.7652 -6.6986 5.3548 42 1 2.5239 -13.6953 6.0696 43 1 3.3029 -9.9263 6.8446 44 1 3.5481 -8.3089 6.1430 45 1 1.1377 -4.6526 1.4268 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001136559742.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:10:56 Heat of formation + Delta-G solvation = -43.031933 kcal Electronic energy + Delta-G solvation = -27370.470872 eV Core-core repulsion = 23354.888523 eV Total energy + Delta-G solvation = -4015.582349 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.59082 -39.65033 -38.68334 -36.86638 -36.29825 -35.36978 -34.79534 -32.36830 -31.04111 -29.56214 -28.50868 -27.86950 -27.55803 -26.81710 -24.69082 -22.89351 -21.99369 -20.51726 -19.53018 -18.88260 -18.66441 -16.99292 -16.78045 -16.66679 -16.37345 -16.13472 -15.87692 -15.60909 -15.42676 -14.87683 -14.55771 -14.06426 -13.95574 -13.81927 -13.64289 -13.47241 -13.22075 -12.95917 -12.71686 -12.62687 -12.58859 -12.45675 -12.27746 -12.01470 -11.86940 -11.67276 -11.64412 -11.50317 -11.22911 -11.12703 -10.96569 -10.80347 -10.70994 -10.61712 -10.12187 -9.36690 -8.85009 -8.55376 -8.19208 -8.18520 -6.59337 -4.22042 1.29672 1.35290 2.60118 2.81519 2.89471 3.00295 3.07302 3.13986 3.30904 3.40019 3.67872 3.93933 4.23638 4.33262 4.38571 4.41323 4.65164 4.65813 4.77726 4.89037 4.92959 4.99913 5.00716 5.05259 5.11487 5.13320 5.22665 5.25928 5.26850 5.39785 5.43875 5.44193 5.50745 5.60501 5.64582 5.79760 5.89632 5.95327 6.12231 6.16675 6.33574 6.42501 7.16979 7.25515 7.44449 7.82696 7.97209 8.21267 8.68250 9.01684 9.37127 10.51698 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.023462 B = 0.002224 C = 0.002167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.151447 B =12588.630047 C =12919.720545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.096 4.096 3 C -0.146 4.146 4 C 0.064 3.936 5 O -0.310 6.310 6 C 0.168 3.832 7 C -0.251 4.251 8 C -0.040 4.040 9 C -0.248 4.248 10 C 0.175 3.825 11 O -0.280 6.280 12 C 0.039 3.961 13 C 0.476 3.524 14 O -0.521 6.521 15 N -0.457 5.457 16 C -0.324 4.324 17 H 0.112 0.888 18 C 0.064 3.936 19 N -0.848 5.848 20 Si 0.859 3.141 21 H -0.269 1.269 22 H -0.278 1.278 23 H -0.255 1.255 24 C 0.175 3.825 25 C 0.201 3.799 26 N -0.434 5.434 27 C -0.187 4.187 28 H 0.065 0.935 29 H 0.054 0.946 30 H 0.056 0.944 31 H 0.082 0.918 32 H 0.058 0.942 33 H 0.057 0.943 34 H 0.064 0.936 35 H 0.062 0.938 36 H 0.063 0.937 37 H 0.126 0.874 38 H 0.126 0.874 39 H 0.130 0.870 40 H 0.088 0.912 41 H 0.081 0.919 42 H 0.278 0.722 43 H 0.120 0.880 44 H 0.108 0.892 45 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.016 24.772 -5.216 26.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.114 4.114 3 C -0.203 4.203 4 C -0.011 4.011 5 O -0.224 6.224 6 C 0.122 3.878 7 C -0.270 4.270 8 C -0.058 4.058 9 C -0.267 4.267 10 C 0.128 3.872 11 O -0.191 6.191 12 C -0.040 4.040 13 C 0.263 3.737 14 O -0.397 6.397 15 N -0.183 5.183 16 C -0.451 4.451 17 H 0.130 0.870 18 C -0.144 4.144 19 N -0.483 5.483 20 Si 0.685 3.315 21 H -0.195 1.195 22 H -0.203 1.203 23 H -0.179 1.179 24 C 0.048 3.952 25 C -0.118 4.118 26 N -0.113 5.113 27 C -0.206 4.206 28 H 0.084 0.916 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.100 0.900 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.143 0.857 38 H 0.144 0.856 39 H 0.148 0.852 40 H 0.106 0.894 41 H 0.099 0.901 42 H 0.089 0.911 43 H 0.137 0.863 44 H 0.126 0.874 45 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 5.414 24.855 -4.889 25.903 hybrid contribution 1.565 -0.121 0.423 1.626 sum 6.979 24.734 -4.466 26.085 Atomic orbital electron populations 1.21829 0.94236 1.02791 1.01698 1.21141 0.97099 0.95741 0.97456 1.21784 1.01192 0.94820 1.02522 1.22921 0.99539 0.79473 0.99200 1.86039 1.74142 1.20806 1.41368 1.18479 0.92847 0.89834 0.86634 1.21071 1.08194 1.00829 0.96943 1.20666 0.95845 0.92590 0.96705 1.21217 1.07657 0.97138 1.00711 1.18691 0.91980 0.83397 0.93112 1.86198 1.73131 1.16875 1.42884 1.22766 1.00417 0.92095 0.88676 1.19751 0.84734 0.85395 0.83835 1.90649 1.40042 1.79814 1.29210 1.43494 1.52065 1.09471 1.13231 1.19049 1.04259 0.77641 1.44109 0.87019 1.25382 0.98536 0.94972 0.95509 1.69742 1.36342 1.03144 1.39050 0.87205 0.85943 0.79834 0.78527 1.19537 1.20341 1.17858 1.19641 0.90707 1.00759 0.84059 1.29994 0.94827 0.92871 0.94131 1.81072 1.08929 1.10495 1.10761 1.19424 1.09520 0.90608 1.01094 0.91638 0.92724 0.92480 0.89966 0.92336 0.92345 0.91689 0.91955 0.91920 0.85657 0.85563 0.85221 0.89384 0.90147 0.91094 0.86311 0.87410 0.84195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.09 37.16 0.34 -0.71 16 2 C -0.10 -0.64 3.16 -90.61 -0.29 -0.93 16 3 C -0.15 -0.70 9.19 37.16 0.34 -0.36 16 4 C 0.06 0.51 4.12 37.16 0.15 0.66 16 5 O -0.31 -3.56 9.67 -19.40 -0.19 -3.75 16 6 C 0.17 2.11 6.68 -39.23 -0.26 1.85 16 7 C -0.25 -2.71 9.04 -39.41 -0.36 -3.06 16 8 C -0.04 -0.43 10.04 -39.63 -0.40 -0.82 16 9 C -0.25 -3.13 9.04 -39.41 -0.36 -3.48 16 10 C 0.18 2.66 6.68 -39.24 -0.26 2.40 16 11 O -0.28 -5.05 9.67 -39.35 -0.38 -5.43 16 12 C 0.04 0.65 3.83 36.00 0.14 0.79 16 13 C 0.48 10.39 7.64 -10.99 -0.08 10.30 16 14 O -0.52 -13.73 16.37 -14.37 -0.24 -13.96 16 15 N -0.46 -9.98 2.16 -117.94 -0.25 -10.23 16 16 C -0.32 -8.44 9.36 -14.94 -0.14 -8.58 16 17 H 0.11 3.34 7.91 -52.49 -0.42 2.93 16 18 C 0.06 1.61 5.26 -17.47 -0.09 1.52 16 19 N -0.85 -22.80 13.96 55.50 0.77 -22.02 16 20 Si 0.86 17.48 25.04 -169.99 -4.26 13.22 16 21 H -0.27 -4.89 6.69 56.52 0.38 -4.51 16 22 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 23 H -0.25 -4.91 7.11 56.52 0.40 -4.50 16 24 C 0.18 2.98 4.27 -6.83 -0.03 2.95 16 25 C 0.20 3.59 15.00 -20.77 -0.31 3.28 16 26 N -0.43 -8.40 18.53 42.14 0.78 -7.62 16 27 C -0.19 -2.72 9.93 -39.29 -0.39 -3.11 16 28 H 0.06 0.56 7.82 -51.93 -0.41 0.16 16 29 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 34 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 35 H 0.06 0.43 7.66 -51.93 -0.40 0.04 16 36 H 0.06 0.45 7.66 -51.93 -0.40 0.06 16 37 H 0.13 1.03 6.29 -52.49 -0.33 0.70 16 38 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 39 H 0.13 1.41 6.29 -52.49 -0.33 1.08 16 40 H 0.09 1.14 6.94 -51.93 -0.36 0.78 16 41 H 0.08 1.19 7.00 -51.93 -0.36 0.83 16 42 H 0.28 6.87 8.31 -40.82 -0.34 6.53 16 43 H 0.12 2.07 3.61 -51.93 -0.19 1.88 16 44 H 0.11 1.29 6.70 -51.93 -0.35 0.94 16 45 H 0.14 2.04 8.06 -52.49 -0.42 1.62 16 LS Contribution 379.76 15.07 5.72 5.72 Total: -1.00 -32.02 379.76 -6.11 -38.13 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: -6.08 Total: 3.23 kcal Atomic # 6 Polarization: 4.70 SS G_CDS: -2.00 Total: 2.70 kcal Atomic # 7 Polarization: -41.17 SS G_CDS: 1.30 Total: -39.87 kcal Atomic # 8 Polarization: -22.33 SS G_CDS: -0.80 Total: -23.14 kcal Atomic # 14 Polarization: 17.48 SS G_CDS: -4.26 Total: 13.22 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -32.02 -6.11 -38.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001136559742.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.899 kcal (2) G-P(sol) polarization free energy of solvation -32.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds