Wall clock time and date at job start Tue Mar 31 2020 17:10:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53009 * 109.47137 * 2 1 4 4 C 1.53006 * 109.47471 * 119.99842 * 2 1 3 5 5 O 1.42897 * 109.46722 * 64.99810 * 4 2 1 6 6 C 1.35891 * 116.99781 * 180.02562 * 5 4 2 7 7 C 1.38794 * 120.02767 * 0.02562 * 6 5 4 8 8 C 1.38156 * 120.05698 * 179.97438 * 7 6 5 9 9 C 1.38201 * 120.10800 * 0.02562 * 8 7 6 10 10 C 1.38749 * 120.05348 * 359.95405 * 9 8 7 11 11 O 1.35903 * 120.02710 * 180.02562 * 10 9 8 12 12 C 1.42900 * 117.00035 * 359.97438 * 11 10 9 13 13 C 1.50694 * 109.47239 * 179.97438 * 12 11 10 14 14 O 1.21295 * 119.99939 * 0.02562 * 13 12 11 15 15 N 1.34779 * 120.00191 * 180.02562 * 13 12 11 16 16 C 1.37093 * 120.00191 * 180.02562 * 15 13 12 17 17 H 1.08000 * 119.99759 * 322.47357 * 16 15 13 18 18 C 1.38946 * 120.00104 * 142.47824 * 16 15 13 19 19 N 1.31415 * 119.99821 * 157.59047 * 18 16 15 20 20 Si 1.86793 * 120.00007 * 337.58547 * 18 16 15 21 21 H 1.48507 * 109.47302 * 95.71045 * 20 18 16 22 22 H 1.48506 * 109.47221 * 215.70598 * 20 18 16 23 23 H 1.48494 * 109.47372 * 335.71027 * 20 18 16 24 24 C 1.46499 * 119.99725 * 359.97438 * 15 13 12 25 25 C 1.47208 * 109.46715 * 83.80230 * 24 15 13 26 26 N 9.19489 * 137.95993 * 149.23316 * 5 1 2 27 27 C 1.38622 * 120.02864 * 179.72581 * 6 5 4 28 28 H 1.08991 * 109.46622 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.46694 * 300.00087 * 1 2 3 30 30 H 1.08997 * 109.46986 * 60.00292 * 1 2 3 31 31 H 1.09002 * 109.47164 * 239.99891 * 2 1 3 32 32 H 1.08993 * 109.47202 * 59.99621 * 3 2 1 33 33 H 1.08996 * 109.46974 * 180.02562 * 3 2 1 34 34 H 1.09000 * 109.46753 * 300.00224 * 3 2 1 35 35 H 1.08993 * 109.47335 * 185.00150 * 4 2 1 36 36 H 1.09000 * 109.46728 * 305.00025 * 4 2 1 37 37 H 1.08002 * 119.97516 * 359.97438 * 7 6 5 38 38 H 1.07998 * 119.94997 * 179.97438 * 8 7 6 39 39 H 1.08000 * 119.97219 * 179.97438 * 9 8 7 40 40 H 1.08997 * 109.47184 * 300.00789 * 12 11 10 41 41 H 1.09007 * 109.46920 * 60.00181 * 12 11 10 42 42 H 0.97006 * 119.99632 * 179.97438 * 19 18 16 43 43 H 1.08996 * 109.47039 * 203.79575 * 24 15 13 44 44 H 1.08997 * 109.47264 * 323.80401 * 24 15 13 45 45 H 1.07996 * 120.05268 * 0.02562 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 6 2.0401 -0.7212 1.2493 5 8 1.6621 -2.0981 1.1920 6 6 2.0398 -2.8853 2.2333 7 6 2.7593 -2.3428 3.2889 8 6 3.1432 -3.1425 4.3481 9 6 2.8124 -4.4843 4.3592 10 6 2.0928 -5.0313 3.3065 11 8 1.7673 -6.3507 3.3182 12 6 2.1988 -7.1154 4.4456 13 6 1.7495 -8.5447 4.2849 14 8 1.1218 -8.8762 3.3013 15 7 2.0450 -9.4549 5.2340 16 6 1.6367 -10.7554 5.0875 17 1 0.6735 -10.9729 4.6500 18 6 2.4619 -11.7936 5.5019 19 7 1.9477 -12.9704 5.7806 20 14 4.3022 -11.5166 5.6628 21 1 4.6315 -11.1848 7.0723 22 1 5.0253 -12.7504 5.2627 23 1 4.7128 -10.3943 4.7812 24 6 2.8036 -9.0547 6.4217 25 6 1.8858 -8.4825 7.4202 26 7 1.1784 -8.0413 8.1914 27 6 1.7014 -4.2295 2.2451 28 1 -0.3632 -1.0276 0.0005 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 1.6767 1.9564 0.8899 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9564 -0.8900 35 1 3.1264 -0.6443 1.2952 36 1 1.6055 -0.2617 2.1370 37 1 3.0195 -1.2946 3.2823 38 1 3.7034 -2.7186 5.1683 39 1 3.1139 -5.1075 5.1881 40 1 3.2862 -7.0812 4.5131 41 1 1.7652 -6.6986 5.3548 42 1 2.5239 -13.6953 6.0696 43 1 3.3029 -9.9263 6.8446 44 1 3.5481 -8.3089 6.1430 45 1 1.1377 -4.6526 1.4268 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001136559742.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:10:55 Heat of formation + Delta-G solvation = -62.811983 kcal Electronic energy + Delta-G solvation = -27371.328599 eV Core-core repulsion = 23354.888523 eV Total energy + Delta-G solvation = -4016.440077 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.63701 -40.93757 -39.93186 -38.03182 -37.61501 -36.50886 -36.01149 -34.25475 -32.03083 -30.54815 -29.85307 -29.34034 -28.04863 -27.50673 -26.37619 -23.81450 -22.98439 -21.12475 -21.07869 -20.38223 -19.84993 -18.52537 -18.05048 -17.76656 -17.34893 -17.27436 -17.02229 -16.86240 -16.54917 -15.95623 -15.62335 -15.30785 -15.26014 -14.95329 -14.65572 -14.59768 -14.39134 -14.33127 -14.05992 -13.89735 -13.57142 -13.37251 -13.32155 -13.15298 -13.00935 -12.72934 -12.67488 -12.44194 -12.18193 -12.08751 -12.00193 -11.86445 -11.77881 -11.51510 -11.47817 -11.13736 -10.58932 -10.05221 -9.53600 -9.11438 -8.51090 -6.22720 0.37839 0.41932 1.25241 1.30371 1.39397 1.55378 1.65785 1.70398 1.79493 2.22399 2.33181 2.75562 2.76651 2.93272 3.11556 3.56026 3.78211 3.81005 3.86912 3.91893 4.03181 4.09916 4.11391 4.14277 4.20417 4.21326 4.30777 4.42346 4.53874 4.56581 4.67987 4.77697 4.86356 4.98417 5.01685 5.20322 5.24188 5.27332 5.38830 5.39064 5.40873 5.45692 5.57046 5.98207 6.24576 6.39998 6.45031 6.48798 6.81037 7.09176 7.60438 8.65239 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.023462 B = 0.002224 C = 0.002167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.151447 B =12588.630047 C =12919.720545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.095 4.095 3 C -0.141 4.141 4 C 0.056 3.944 5 O -0.329 6.329 6 C 0.162 3.838 7 C -0.244 4.244 8 C -0.032 4.032 9 C -0.250 4.250 10 C 0.150 3.850 11 O -0.318 6.318 12 C 0.050 3.950 13 C 0.467 3.533 14 O -0.585 6.585 15 N -0.463 5.463 16 C -0.346 4.346 17 H 0.042 0.958 18 C 0.013 3.987 19 N -0.903 5.903 20 Si 0.931 3.069 21 H -0.219 1.219 22 H -0.288 1.288 23 H -0.229 1.229 24 C 0.172 3.828 25 C 0.217 3.783 26 N -0.462 5.462 27 C -0.217 4.217 28 H 0.041 0.959 29 H 0.059 0.941 30 H 0.066 0.934 31 H 0.073 0.927 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.070 0.930 35 H 0.077 0.923 36 H 0.074 0.926 37 H 0.156 0.844 38 H 0.166 0.834 39 H 0.154 0.846 40 H 0.138 0.862 41 H 0.103 0.897 42 H 0.284 0.716 43 H 0.123 0.877 44 H 0.176 0.824 45 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.242 28.596 -3.211 30.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.114 4.114 3 C -0.198 4.198 4 C -0.018 4.018 5 O -0.243 6.243 6 C 0.116 3.884 7 C -0.262 4.262 8 C -0.050 4.050 9 C -0.268 4.268 10 C 0.104 3.896 11 O -0.230 6.230 12 C -0.028 4.028 13 C 0.257 3.743 14 O -0.466 6.466 15 N -0.187 5.187 16 C -0.473 4.473 17 H 0.060 0.940 18 C -0.191 4.191 19 N -0.539 5.539 20 Si 0.750 3.250 21 H -0.143 1.143 22 H -0.215 1.215 23 H -0.151 1.151 24 C 0.047 3.953 25 C -0.101 4.101 26 N -0.141 5.141 27 C -0.237 4.237 28 H 0.061 0.939 29 H 0.078 0.922 30 H 0.085 0.915 31 H 0.092 0.908 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.089 0.911 35 H 0.096 0.904 36 H 0.092 0.908 37 H 0.173 0.827 38 H 0.183 0.817 39 H 0.171 0.829 40 H 0.155 0.845 41 H 0.120 0.880 42 H 0.094 0.906 43 H 0.140 0.860 44 H 0.193 0.807 45 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 9.638 28.725 -2.846 30.433 hybrid contribution 0.095 -1.253 -0.289 1.289 sum 9.734 27.473 -3.135 29.314 Atomic orbital electron populations 1.21829 0.94810 1.01481 1.02463 1.21173 0.96639 0.96909 0.96682 1.21756 1.01683 0.93184 1.03187 1.23217 1.00628 0.77749 1.00216 1.86037 1.74376 1.22472 1.41368 1.18573 0.93021 0.89229 0.87553 1.21455 1.06544 1.02346 0.95886 1.21140 0.94844 0.91712 0.97329 1.21508 1.06791 0.98362 1.00175 1.18883 0.93870 0.82231 0.94591 1.86134 1.74452 1.18683 1.43772 1.22714 1.03048 0.87942 0.89054 1.20780 0.83125 0.87694 0.82711 1.90613 1.42678 1.81438 1.31879 1.43474 1.52246 1.07957 1.15050 1.18546 1.02694 0.80730 1.45373 0.93959 1.26334 1.04703 0.93896 0.94147 1.69880 1.38878 1.04663 1.40474 0.86097 0.76889 0.80235 0.81739 1.14307 1.21464 1.15112 1.20079 0.90717 1.02778 0.81749 1.30064 0.94301 0.92078 0.93705 1.81101 1.09323 1.11866 1.11769 1.19503 1.10860 0.92089 1.01220 0.93947 0.92181 0.91530 0.90824 0.91611 0.91525 0.91122 0.90441 0.90786 0.82668 0.81673 0.82887 0.84488 0.87963 0.90624 0.85984 0.80689 0.86392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 9.09 71.98 0.65 -1.36 16 2 C -0.10 -1.15 3.16 -10.79 -0.03 -1.19 16 3 C -0.14 -1.01 9.19 71.99 0.66 -0.35 16 4 C 0.06 0.78 4.12 71.98 0.30 1.08 16 5 O -0.33 -7.42 9.67 -92.32 -0.89 -8.31 16 6 C 0.16 3.93 6.68 22.49 0.15 4.08 16 7 C -0.24 -4.37 9.04 22.38 0.20 -4.17 16 8 C -0.03 -0.54 10.04 22.24 0.22 -0.32 16 9 C -0.25 -5.35 9.04 22.38 0.20 -5.14 16 10 C 0.15 4.43 6.68 22.49 0.15 4.58 16 11 O -0.32 -11.48 9.67 -73.42 -0.71 -12.19 16 12 C 0.05 1.55 3.83 71.23 0.27 1.82 16 13 C 0.47 20.55 7.64 87.65 0.67 21.22 16 14 O -0.59 -32.82 16.37 15.96 0.26 -32.56 16 15 N -0.46 -19.99 2.16 -645.42 -1.39 -21.38 16 16 C -0.35 -18.92 9.36 84.04 0.79 -18.13 16 17 H 0.04 2.82 7.91 -2.91 -0.02 2.79 16 18 C 0.01 0.66 5.26 84.92 0.45 1.10 16 19 N -0.90 -50.57 13.96 21.66 0.30 -50.27 16 20 Si 0.93 34.03 25.04 68.60 1.72 35.75 16 21 H -0.22 -6.37 6.69 99.48 0.67 -5.70 16 22 H -0.29 -11.05 7.11 99.48 0.71 -10.35 16 23 H -0.23 -7.40 7.11 99.48 0.71 -6.70 16 24 C 0.17 5.18 4.27 84.58 0.36 5.54 16 25 C 0.22 7.16 15.00 89.45 1.34 8.51 16 26 N -0.46 -16.97 18.53 20.00 0.37 -16.60 16 27 C -0.22 -6.50 9.93 22.46 0.22 -6.27 16 28 H 0.04 0.76 7.82 -2.39 -0.02 0.74 16 29 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 33 H 0.07 0.39 8.14 -2.39 -0.02 0.37 16 34 H 0.07 0.44 8.14 -2.39 -0.02 0.43 16 35 H 0.08 0.84 7.66 -2.39 -0.02 0.83 16 36 H 0.07 0.86 7.66 -2.39 -0.02 0.84 16 37 H 0.16 1.80 6.29 -2.91 -0.02 1.78 16 38 H 0.17 1.50 8.06 -2.91 -0.02 1.47 16 39 H 0.15 2.45 6.29 -2.91 -0.02 2.43 16 40 H 0.14 2.80 6.94 -2.39 -0.02 2.79 16 41 H 0.10 2.68 7.00 -2.38 -0.02 2.66 16 42 H 0.28 14.43 8.31 -92.70 -0.77 13.66 16 43 H 0.12 3.67 3.61 -2.39 -0.01 3.66 16 44 H 0.18 2.92 6.70 -2.39 -0.02 2.90 16 45 H 0.12 3.84 8.06 -2.91 -0.02 3.82 16 Total: -1.00 -80.58 379.76 7.24 -73.34 By element: Atomic # 1 Polarization: 20.26 SS G_CDS: 0.97 Total: 21.23 kcal Atomic # 6 Polarization: 4.38 SS G_CDS: 6.61 Total: 10.99 kcal Atomic # 7 Polarization: -87.53 SS G_CDS: -0.72 Total: -88.25 kcal Atomic # 8 Polarization: -51.72 SS G_CDS: -1.34 Total: -53.06 kcal Atomic # 14 Polarization: 34.03 SS G_CDS: 1.72 Total: 35.75 kcal Total: -80.58 7.24 -73.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001136559742.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.531 kcal (2) G-P(sol) polarization free energy of solvation -80.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds