Wall clock time and date at job start Tue Mar 31 2020 16:25:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47308 * 2 1 4 4 C 1.53000 * 109.47674 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47266 * 180.02562 * 4 3 2 6 6 C 1.37099 * 119.99557 * 265.56328 * 5 4 3 7 7 H 1.07999 * 120.00110 * 145.67478 * 6 5 4 8 8 C 1.38949 * 120.00193 * 325.67418 * 6 5 4 9 9 N 1.31421 * 120.00074 * 338.40761 * 8 6 5 10 10 Si 1.86797 * 120.00273 * 158.40712 * 8 6 5 11 11 H 1.48498 * 109.46979 * 0.02562 * 10 8 6 12 12 H 1.48504 * 109.47130 * 120.00129 * 10 8 6 13 13 H 1.48501 * 109.47255 * 240.00124 * 10 8 6 14 14 C 1.34775 * 120.00331 * 85.56818 * 5 4 3 15 15 O 1.21293 * 119.99981 * 359.97438 * 14 5 4 16 16 C 1.50698 * 120.00032 * 179.97438 * 14 5 4 17 17 C 1.53002 * 109.47317 * 179.97438 * 16 14 5 18 18 N 1.46497 * 109.47117 * 179.97438 * 17 16 14 19 19 C 1.39465 * 126.25598 * 270.17028 * 18 17 16 20 20 C 1.38603 * 133.36414 * 359.96729 * 19 18 17 21 21 C 1.38127 * 119.82634 * 180.37636 * 20 19 18 22 22 C 1.38408 * 120.18601 * 359.95815 * 21 20 19 23 23 C 1.38130 * 120.30985 * 0.03940 * 22 21 20 24 24 C 1.38607 * 119.91863 * 359.97438 * 23 22 21 25 25 O 1.35557 * 132.99972 * 179.97438 * 24 23 22 26 26 C 1.34223 * 109.18182 * 180.02562 * 25 24 23 27 27 O 1.21594 * 125.27792 * 180.02562 * 26 25 24 28 28 H 1.09001 * 109.47059 * 60.00124 * 1 2 3 29 29 H 1.09004 * 109.47052 * 179.97438 * 1 2 3 30 30 H 1.08991 * 109.46952 * 299.99391 * 1 2 3 31 31 H 1.09007 * 109.47026 * 240.00301 * 2 1 3 32 32 H 1.08995 * 109.47548 * 120.00338 * 2 1 3 33 33 H 1.09007 * 109.46831 * 60.00182 * 3 2 1 34 34 H 1.09001 * 109.47483 * 300.00727 * 3 2 1 35 35 H 1.08994 * 109.46794 * 59.99925 * 4 3 2 36 36 H 1.09008 * 109.46702 * 300.00360 * 4 3 2 37 37 H 0.96998 * 120.00097 * 180.02562 * 9 8 6 38 38 H 1.09004 * 109.47215 * 59.99700 * 16 14 5 39 39 H 1.08993 * 109.47171 * 299.99807 * 16 14 5 40 40 H 1.09004 * 109.46744 * 59.99998 * 17 16 14 41 41 H 1.09002 * 109.46762 * 300.00148 * 17 16 14 42 42 H 1.08000 * 120.08862 * 0.37960 * 20 19 18 43 43 H 1.07998 * 119.90893 * 179.97438 * 21 20 19 44 44 H 1.07997 * 119.84897 * 180.02562 * 22 21 20 45 45 H 1.08002 * 120.03832 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0583 2.8237 0.0000 6 6 4.3729 3.4400 -1.1836 7 1 4.1959 4.4985 -1.3050 8 6 4.9193 2.7029 -2.2270 9 7 5.5224 1.5617 -1.9800 10 14 4.7967 3.3340 -3.9809 11 1 4.0759 4.6322 -3.9905 12 1 6.1612 3.5218 -4.5359 13 1 4.0560 2.3498 -4.8105 14 6 4.1984 3.4885 1.1640 15 8 3.9197 2.9434 2.2110 16 6 4.7012 4.9091 1.1646 17 6 4.7660 5.4266 2.6029 18 7 5.2554 6.8074 2.6035 19 6 6.5880 7.2102 2.6877 20 6 7.7860 6.5206 2.7898 21 6 8.9759 7.2180 2.8643 22 6 8.9745 8.6018 2.8364 23 6 7.7845 9.2957 2.7348 24 6 6.5854 8.6046 2.6597 25 8 5.2937 9.0027 2.5568 26 6 4.5003 7.9207 2.5198 27 8 3.2879 7.9417 2.4297 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5138 0.8899 33 1 1.6767 1.9563 0.8901 34 1 1.6766 1.9564 -0.8899 35 1 3.9329 0.9289 -0.8908 36 1 3.9337 0.9285 0.8892 37 1 5.9042 1.0473 -2.7084 38 1 4.0233 5.5348 0.5839 39 1 5.6962 4.9426 0.7209 40 1 5.4438 4.8011 3.1839 41 1 3.7708 5.3933 3.0462 42 1 7.7891 5.4408 2.8109 43 1 9.9101 6.6820 2.9443 44 1 9.9081 9.1416 2.8946 45 1 7.7885 10.3755 2.7130 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001142441663.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:25:36 Heat of formation + Delta-G solvation = -61.012411 kcal Electronic energy + Delta-G solvation = -28497.759434 eV Core-core repulsion = 24481.397393 eV Total energy + Delta-G solvation = -4016.362041 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.24285 -38.85233 -38.60444 -37.41732 -36.14820 -35.32961 -33.99173 -31.65028 -31.49296 -30.77964 -29.32289 -28.35492 -25.27428 -24.85350 -23.51121 -22.81503 -22.59820 -21.04112 -20.38297 -19.16206 -18.65729 -17.80204 -17.39176 -16.73296 -16.50122 -16.01213 -15.16219 -14.85961 -14.79045 -14.62027 -14.57329 -14.29345 -14.05474 -14.00521 -13.44594 -13.39064 -13.22231 -12.58531 -12.51061 -12.41525 -12.23707 -12.07592 -11.76112 -11.46800 -11.37516 -11.30426 -11.09067 -10.91166 -10.69281 -10.60244 -10.57749 -10.49958 -10.36314 -10.22313 -9.76023 -9.18494 -8.96937 -8.58419 -8.16638 -7.62225 -6.47949 -4.15592 0.92803 1.01198 2.11565 2.53924 2.84381 3.03408 3.16287 3.20390 3.41214 3.77906 4.02339 4.22117 4.60308 4.67003 4.74589 4.89257 4.99297 5.02486 5.17162 5.37434 5.39131 5.47800 5.50707 5.63840 5.65625 5.77530 5.80977 6.02466 6.04803 6.11951 6.19214 6.23660 6.26034 6.32286 6.37965 6.41050 6.42310 6.50585 6.57868 6.70867 6.82306 7.08568 7.19921 7.29050 7.43523 7.71437 7.82440 8.27431 8.96568 9.39387 9.82951 10.52630 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.011834 B = 0.003400 C = 0.003025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2365.464824 B = 8233.659413 C = 9255.474681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.119 4.119 3 C -0.129 4.129 4 C 0.114 3.886 5 N -0.432 5.432 6 C -0.342 4.342 7 H 0.090 0.910 8 C 0.046 3.954 9 N -0.855 5.855 10 Si 0.911 3.089 11 H -0.267 1.267 12 H -0.280 1.280 13 H -0.278 1.278 14 C 0.471 3.529 15 O -0.609 6.609 16 C -0.137 4.137 17 C 0.147 3.853 18 N -0.541 5.541 19 C 0.080 3.920 20 C -0.098 4.098 21 C -0.098 4.098 22 C -0.115 4.115 23 C -0.081 4.081 24 C 0.029 3.971 25 O -0.241 6.241 26 C 0.633 3.367 27 O -0.485 6.485 28 H 0.050 0.950 29 H 0.047 0.953 30 H 0.050 0.950 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.053 0.947 34 H 0.057 0.943 35 H 0.108 0.892 36 H 0.052 0.948 37 H 0.270 0.730 38 H 0.085 0.915 39 H 0.092 0.908 40 H 0.099 0.901 41 H 0.102 0.898 42 H 0.138 0.862 43 H 0.138 0.862 44 H 0.139 0.861 45 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.338 7.805 5.944 11.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.157 4.157 3 C -0.167 4.167 4 C -0.010 4.010 5 N -0.148 5.148 6 C -0.470 4.470 7 H 0.108 0.892 8 C -0.160 4.160 9 N -0.491 5.491 10 Si 0.737 3.263 11 H -0.191 1.191 12 H -0.206 1.206 13 H -0.203 1.203 14 C 0.259 3.741 15 O -0.497 6.497 16 C -0.178 4.178 17 C 0.028 3.972 18 N -0.271 5.271 19 C -0.019 4.019 20 C -0.119 4.119 21 C -0.117 4.117 22 C -0.134 4.134 23 C -0.100 4.100 24 C -0.018 4.018 25 O -0.147 6.147 26 C 0.388 3.612 27 O -0.368 6.368 28 H 0.070 0.930 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.076 0.924 35 H 0.126 0.874 36 H 0.071 0.929 37 H 0.080 0.920 38 H 0.103 0.897 39 H 0.110 0.890 40 H 0.117 0.883 41 H 0.120 0.880 42 H 0.156 0.844 43 H 0.156 0.844 44 H 0.157 0.843 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 5.416 7.540 6.251 11.192 hybrid contribution -0.119 0.188 -1.193 1.213 sum 5.297 7.728 5.059 10.647 Atomic orbital electron populations 1.21758 0.96621 1.00683 1.01519 1.21422 0.95002 0.97691 1.01574 1.21908 0.97850 0.95561 1.01406 1.21471 0.91167 0.84661 1.03685 1.43463 1.54574 1.12084 1.04703 1.19481 1.42014 0.95439 0.90025 0.89246 1.25315 0.94084 0.96237 1.00401 1.69933 1.31411 1.14871 1.32910 0.86126 0.78248 0.79376 0.82531 1.19113 1.20626 1.20313 1.19988 0.82027 0.88035 0.84023 1.90538 1.57017 1.70498 1.31635 1.21697 1.03988 0.96455 0.95624 1.21536 1.02091 0.74904 0.98670 1.46165 1.04582 1.08727 1.67670 1.18647 0.86493 0.92968 1.03801 1.20243 0.88747 1.00814 1.02084 1.21018 0.97431 0.94124 0.99146 1.20910 0.96962 0.94210 1.01300 1.19987 0.87542 1.00445 1.02045 1.19045 0.84085 0.91287 1.07405 1.84972 1.15828 1.33694 1.80197 1.18558 0.85708 0.78318 0.78662 1.91162 1.07037 1.83414 1.55149 0.93045 0.93409 0.93049 0.92276 0.92396 0.92813 0.92378 0.87407 0.92941 0.91950 0.89684 0.88983 0.88305 0.88022 0.84374 0.84413 0.84327 0.84421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 9.91 37.16 0.37 -1.76 16 2 C -0.12 -2.00 5.93 -26.73 -0.16 -2.16 16 3 C -0.13 -2.62 5.51 -26.73 -0.15 -2.76 16 4 C 0.11 2.65 4.92 -4.04 -0.02 2.63 16 5 N -0.43 -10.55 2.55 -114.81 -0.29 -10.84 16 6 C -0.34 -8.43 8.70 -14.93 -0.13 -8.56 16 7 H 0.09 2.16 6.98 -52.49 -0.37 1.79 16 8 C 0.05 1.12 4.94 -17.46 -0.09 1.04 16 9 N -0.85 -21.69 11.31 55.50 0.63 -21.06 16 10 Si 0.91 19.05 29.60 -169.99 -5.03 14.02 16 11 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 12 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 13 H -0.28 -5.80 7.11 56.52 0.40 -5.39 16 14 C 0.47 11.00 7.61 -10.99 -0.08 10.91 16 15 O -0.61 -15.17 15.64 5.55 0.09 -15.09 16 16 C -0.14 -2.67 4.68 -27.88 -0.13 -2.80 16 17 C 0.15 2.50 5.32 -4.04 -0.02 2.48 16 18 N -0.54 -8.68 2.81 -119.01 -0.33 -9.01 16 19 C 0.08 1.10 6.84 -83.79 -0.57 0.52 16 20 C -0.10 -1.10 10.03 -39.49 -0.40 -1.50 16 21 C -0.10 -0.84 10.04 -39.56 -0.40 -1.24 16 22 C -0.11 -0.90 10.03 -39.56 -0.40 -1.29 16 23 C -0.08 -0.78 10.06 -39.48 -0.40 -1.18 16 24 C 0.03 0.38 7.35 -38.99 -0.29 0.09 16 25 O -0.24 -3.78 10.72 -21.97 -0.24 -4.01 16 26 C 0.63 11.15 9.07 54.06 0.49 11.64 16 27 O -0.48 -9.91 17.81 -19.00 -0.34 -10.25 16 28 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.06 0.98 8.14 -51.92 -0.42 0.56 16 32 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.05 1.15 8.14 -51.92 -0.42 0.72 16 34 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 35 H 0.11 2.66 5.34 -51.93 -0.28 2.38 16 36 H 0.05 1.27 7.56 -51.92 -0.39 0.87 16 37 H 0.27 6.45 8.31 -40.82 -0.34 6.11 16 38 H 0.08 1.71 7.65 -51.93 -0.40 1.31 16 39 H 0.09 1.77 8.10 -51.93 -0.42 1.35 16 40 H 0.10 1.56 8.10 -51.93 -0.42 1.14 16 41 H 0.10 1.83 8.02 -51.93 -0.42 1.42 16 42 H 0.14 1.48 8.06 -52.49 -0.42 1.05 16 43 H 0.14 0.82 8.06 -52.49 -0.42 0.40 16 44 H 0.14 0.65 8.06 -52.49 -0.42 0.23 16 45 H 0.14 0.99 8.06 -52.49 -0.42 0.57 16 LS Contribution 381.99 15.07 5.76 5.76 Total: -1.00 -29.84 381.99 -8.61 -38.45 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: -6.48 Total: 5.99 kcal Atomic # 6 Polarization: 8.42 SS G_CDS: -2.37 Total: 6.06 kcal Atomic # 7 Polarization: -40.92 SS G_CDS: 0.00 Total: -40.92 kcal Atomic # 8 Polarization: -28.86 SS G_CDS: -0.49 Total: -29.35 kcal Atomic # 14 Polarization: 19.05 SS G_CDS: -5.03 Total: 14.02 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -29.84 -8.61 -38.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001142441663.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.566 kcal (2) G-P(sol) polarization free energy of solvation -29.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds