Wall clock time and date at job start Tue Mar 31 2020 16:25:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47308 * 2 1 4 4 C 1.53000 * 109.47674 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47266 * 180.02562 * 4 3 2 6 6 C 1.37099 * 119.99557 * 265.56328 * 5 4 3 7 7 H 1.07999 * 120.00110 * 145.67478 * 6 5 4 8 8 C 1.38949 * 120.00193 * 325.67418 * 6 5 4 9 9 N 1.31421 * 120.00074 * 338.40761 * 8 6 5 10 10 Si 1.86797 * 120.00273 * 158.40712 * 8 6 5 11 11 H 1.48498 * 109.46979 * 0.02562 * 10 8 6 12 12 H 1.48504 * 109.47130 * 120.00129 * 10 8 6 13 13 H 1.48501 * 109.47255 * 240.00124 * 10 8 6 14 14 C 1.34775 * 120.00331 * 85.56818 * 5 4 3 15 15 O 1.21293 * 119.99981 * 359.97438 * 14 5 4 16 16 C 1.50698 * 120.00032 * 179.97438 * 14 5 4 17 17 C 1.53002 * 109.47317 * 179.97438 * 16 14 5 18 18 N 1.46497 * 109.47117 * 179.97438 * 17 16 14 19 19 C 1.39465 * 126.25598 * 270.17028 * 18 17 16 20 20 C 1.38603 * 133.36414 * 359.96729 * 19 18 17 21 21 C 1.38127 * 119.82634 * 180.37636 * 20 19 18 22 22 C 1.38408 * 120.18601 * 359.95815 * 21 20 19 23 23 C 1.38130 * 120.30985 * 0.03940 * 22 21 20 24 24 C 1.38607 * 119.91863 * 359.97438 * 23 22 21 25 25 O 1.35557 * 132.99972 * 179.97438 * 24 23 22 26 26 C 1.34223 * 109.18182 * 180.02562 * 25 24 23 27 27 O 1.21594 * 125.27792 * 180.02562 * 26 25 24 28 28 H 1.09001 * 109.47059 * 60.00124 * 1 2 3 29 29 H 1.09004 * 109.47052 * 179.97438 * 1 2 3 30 30 H 1.08991 * 109.46952 * 299.99391 * 1 2 3 31 31 H 1.09007 * 109.47026 * 240.00301 * 2 1 3 32 32 H 1.08995 * 109.47548 * 120.00338 * 2 1 3 33 33 H 1.09007 * 109.46831 * 60.00182 * 3 2 1 34 34 H 1.09001 * 109.47483 * 300.00727 * 3 2 1 35 35 H 1.08994 * 109.46794 * 59.99925 * 4 3 2 36 36 H 1.09008 * 109.46702 * 300.00360 * 4 3 2 37 37 H 0.96998 * 120.00097 * 180.02562 * 9 8 6 38 38 H 1.09004 * 109.47215 * 59.99700 * 16 14 5 39 39 H 1.08993 * 109.47171 * 299.99807 * 16 14 5 40 40 H 1.09004 * 109.46744 * 59.99998 * 17 16 14 41 41 H 1.09002 * 109.46762 * 300.00148 * 17 16 14 42 42 H 1.08000 * 120.08862 * 0.37960 * 20 19 18 43 43 H 1.07998 * 119.90893 * 179.97438 * 21 20 19 44 44 H 1.07997 * 119.84897 * 180.02562 * 22 21 20 45 45 H 1.08002 * 120.03832 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0583 2.8237 0.0000 6 6 4.3729 3.4400 -1.1836 7 1 4.1959 4.4985 -1.3050 8 6 4.9193 2.7029 -2.2270 9 7 5.5224 1.5617 -1.9800 10 14 4.7967 3.3340 -3.9809 11 1 4.0759 4.6322 -3.9905 12 1 6.1612 3.5218 -4.5359 13 1 4.0560 2.3498 -4.8105 14 6 4.1984 3.4885 1.1640 15 8 3.9197 2.9434 2.2110 16 6 4.7012 4.9091 1.1646 17 6 4.7660 5.4266 2.6029 18 7 5.2554 6.8074 2.6035 19 6 6.5880 7.2102 2.6877 20 6 7.7860 6.5206 2.7898 21 6 8.9759 7.2180 2.8643 22 6 8.9745 8.6018 2.8364 23 6 7.7845 9.2957 2.7348 24 6 6.5854 8.6046 2.6597 25 8 5.2937 9.0027 2.5568 26 6 4.5003 7.9207 2.5198 27 8 3.2879 7.9417 2.4297 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5138 0.8899 33 1 1.6767 1.9563 0.8901 34 1 1.6766 1.9564 -0.8899 35 1 3.9329 0.9289 -0.8908 36 1 3.9337 0.9285 0.8892 37 1 5.9042 1.0473 -2.7084 38 1 4.0233 5.5348 0.5839 39 1 5.6962 4.9426 0.7209 40 1 5.4438 4.8011 3.1839 41 1 3.7708 5.3933 3.0462 42 1 7.7891 5.4408 2.8109 43 1 9.9101 6.6820 2.9443 44 1 9.9081 9.1416 2.8946 45 1 7.7885 10.3755 2.7130 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001142441663.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:25:35 Heat of formation + Delta-G solvation = -75.716296 kcal Electronic energy + Delta-G solvation = -28498.397043 eV Core-core repulsion = 24481.397393 eV Total energy + Delta-G solvation = -4016.999650 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -44.38153 -40.67842 -39.69152 -38.62615 -37.54870 -36.96053 -35.60527 -33.50662 -32.93235 -31.64044 -30.43815 -29.80523 -27.02101 -26.44670 -24.50108 -24.10153 -23.81557 -22.29499 -21.92113 -21.03445 -19.63326 -19.09983 -18.70039 -18.33070 -17.80159 -17.65216 -16.79217 -16.32434 -16.25020 -16.21950 -15.72787 -15.68767 -15.25397 -14.94583 -14.78263 -14.74468 -14.50406 -14.15337 -14.01787 -13.80281 -13.58160 -13.25171 -13.15110 -13.10790 -12.96474 -12.74575 -12.45614 -12.28761 -12.15940 -12.07481 -11.99144 -11.97772 -11.84737 -11.70660 -11.45460 -11.04060 -10.46232 -9.81012 -9.54166 -9.22727 -8.36349 -6.10619 0.08125 0.15105 0.87182 1.23482 1.35536 1.45266 1.56323 1.77660 1.92524 2.26754 2.61660 2.87655 3.02855 3.31204 3.46348 3.84127 3.87060 4.03948 4.09110 4.11888 4.20283 4.24319 4.27512 4.30515 4.40433 4.44338 4.58266 4.67827 4.73301 4.82724 4.86325 4.88984 4.97814 5.01315 5.05223 5.16202 5.22191 5.33624 5.35018 5.40464 5.41428 5.44850 5.55505 5.63892 5.93970 6.10121 6.36443 6.40719 7.05214 7.49555 7.93464 8.65293 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.011834 B = 0.003400 C = 0.003025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2365.464824 B = 8233.659413 C = 9255.474681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.115 4.115 3 C -0.118 4.118 4 C 0.115 3.885 5 N -0.444 5.444 6 C -0.359 4.359 7 H 0.090 0.910 8 C 0.012 3.988 9 N -0.882 5.882 10 Si 0.975 3.025 11 H -0.266 1.266 12 H -0.275 1.275 13 H -0.274 1.274 14 C 0.460 3.540 15 O -0.630 6.630 16 C -0.120 4.120 17 C 0.161 3.839 18 N -0.539 5.539 19 C 0.047 3.953 20 C -0.109 4.109 21 C -0.087 4.087 22 C -0.095 4.095 23 C -0.077 4.077 24 C 0.000 4.000 25 O -0.245 6.245 26 C 0.626 3.374 27 O -0.529 6.529 28 H 0.054 0.946 29 H 0.072 0.928 30 H 0.050 0.950 31 H 0.062 0.938 32 H 0.059 0.941 33 H 0.038 0.962 34 H 0.051 0.949 35 H 0.096 0.904 36 H 0.035 0.965 37 H 0.275 0.725 38 H 0.075 0.925 39 H 0.095 0.905 40 H 0.111 0.889 41 H 0.086 0.914 42 H 0.138 0.862 43 H 0.172 0.828 44 H 0.184 0.816 45 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.628 8.659 5.382 13.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.153 4.153 3 C -0.156 4.156 4 C -0.008 4.008 5 N -0.161 5.161 6 C -0.486 4.486 7 H 0.107 0.893 8 C -0.192 4.192 9 N -0.518 5.518 10 Si 0.799 3.201 11 H -0.190 1.190 12 H -0.200 1.200 13 H -0.199 1.199 14 C 0.249 3.751 15 O -0.519 6.519 16 C -0.161 4.161 17 C 0.041 3.959 18 N -0.270 5.270 19 C -0.049 4.049 20 C -0.130 4.130 21 C -0.105 4.105 22 C -0.113 4.113 23 C -0.095 4.095 24 C -0.045 4.045 25 O -0.151 6.151 26 C 0.382 3.618 27 O -0.416 6.416 28 H 0.073 0.927 29 H 0.091 0.909 30 H 0.069 0.931 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.057 0.943 34 H 0.070 0.930 35 H 0.114 0.886 36 H 0.054 0.946 37 H 0.085 0.915 38 H 0.094 0.906 39 H 0.113 0.887 40 H 0.129 0.871 41 H 0.105 0.895 42 H 0.156 0.844 43 H 0.190 0.810 44 H 0.201 0.799 45 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 7.760 8.407 5.697 12.781 hybrid contribution -0.597 -0.063 -0.964 1.136 sum 7.163 8.344 4.733 11.972 Atomic orbital electron populations 1.21719 0.94290 1.02390 1.01683 1.21402 0.97014 0.94997 1.01861 1.21794 0.95680 0.97927 1.00219 1.21441 0.93035 0.84258 1.02085 1.43718 1.54748 1.12472 1.05123 1.19674 1.42743 0.95738 0.90473 0.89256 1.26051 0.93286 0.96298 1.03563 1.70006 1.31827 1.15854 1.34162 0.85155 0.78284 0.78786 0.77880 1.18971 1.20046 1.19916 1.20573 0.81647 0.89335 0.83524 1.90507 1.57839 1.71351 1.32207 1.21524 1.03438 0.93914 0.97214 1.21255 1.01830 0.75882 0.96953 1.45963 1.05877 1.07658 1.67500 1.18983 0.85889 0.93667 1.06409 1.20517 0.88868 1.01160 1.02441 1.21506 0.97481 0.94823 0.96710 1.21486 0.97800 0.94005 0.98012 1.20511 0.86510 1.01967 1.00514 1.19625 0.83870 0.91537 1.09493 1.84907 1.17185 1.32850 1.80151 1.18621 0.85517 0.79009 0.78659 1.91106 1.08783 1.84294 1.57399 0.92736 0.90925 0.93079 0.91901 0.92202 0.94319 0.93025 0.88595 0.94629 0.91512 0.90613 0.88652 0.87092 0.89526 0.84380 0.81031 0.79910 0.81796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.91 9.91 71.98 0.71 -3.19 16 2 C -0.11 -3.83 5.93 30.59 0.18 -3.64 16 3 C -0.12 -4.90 5.51 30.59 0.17 -4.73 16 4 C 0.12 5.56 4.92 86.38 0.42 5.98 16 5 N -0.44 -22.43 2.55 -635.55 -1.62 -24.05 16 6 C -0.36 -18.03 8.70 84.04 0.73 -17.30 16 7 H 0.09 4.40 6.98 -2.91 -0.02 4.38 16 8 C 0.01 0.60 4.94 84.92 0.42 1.02 16 9 N -0.88 -45.03 11.31 21.66 0.24 -44.78 16 10 Si 0.98 38.77 29.60 68.60 2.03 40.80 16 11 H -0.27 -10.44 7.11 99.48 0.71 -9.73 16 12 H -0.27 -10.66 7.11 99.48 0.71 -9.95 16 13 H -0.27 -10.69 7.11 99.48 0.71 -9.98 16 14 C 0.46 22.34 7.61 87.66 0.67 23.00 16 15 O -0.63 -32.61 15.64 -3.07 -0.05 -32.66 16 16 C -0.12 -4.89 4.68 29.85 0.14 -4.75 16 17 C 0.16 5.74 5.32 86.38 0.46 6.20 16 18 N -0.54 -18.02 2.81 -761.03 -2.14 -20.15 16 19 C 0.05 1.30 6.84 38.31 0.26 1.56 16 20 C -0.11 -2.29 10.03 22.33 0.22 -2.07 16 21 C -0.09 -1.14 10.04 22.28 0.22 -0.92 16 22 C -0.09 -1.02 10.03 22.28 0.22 -0.79 16 23 C -0.08 -1.22 10.06 22.33 0.22 -1.00 16 24 C 0.00 0.01 7.35 22.66 0.17 0.18 16 25 O -0.25 -7.91 10.72 8.60 0.09 -7.82 16 26 C 0.63 23.27 9.07 129.79 1.18 24.44 16 27 O -0.53 -23.09 17.81 19.21 0.34 -22.75 16 28 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.06 2.04 8.14 -2.38 -0.02 2.03 16 32 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 33 H 0.04 1.70 8.14 -2.38 -0.02 1.68 16 34 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 35 H 0.10 4.87 5.34 -2.39 -0.01 4.86 16 36 H 0.04 1.79 7.56 -2.38 -0.02 1.77 16 37 H 0.27 13.10 8.31 -92.71 -0.77 12.33 16 38 H 0.08 3.21 7.65 -2.39 -0.02 3.19 16 39 H 0.10 3.78 8.10 -2.39 -0.02 3.76 16 40 H 0.11 3.64 8.10 -2.39 -0.02 3.62 16 41 H 0.09 3.34 8.02 -2.39 -0.02 3.32 16 42 H 0.14 2.82 8.06 -2.91 -0.02 2.80 16 43 H 0.17 1.14 8.06 -2.91 -0.02 1.12 16 44 H 0.18 0.46 8.06 -2.91 -0.02 0.44 16 45 H 0.16 1.72 8.06 -2.91 -0.02 1.70 16 Total: -1.00 -67.88 381.99 6.31 -61.58 By element: Atomic # 1 Polarization: 24.86 SS G_CDS: 0.99 Total: 25.86 kcal Atomic # 6 Polarization: 17.57 SS G_CDS: 6.41 Total: 23.98 kcal Atomic # 7 Polarization: -85.48 SS G_CDS: -3.51 Total: -88.99 kcal Atomic # 8 Polarization: -63.62 SS G_CDS: 0.39 Total: -63.23 kcal Atomic # 14 Polarization: 38.77 SS G_CDS: 2.03 Total: 40.80 kcal Total: -67.88 6.31 -61.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001142441663.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.139 kcal (2) G-P(sol) polarization free energy of solvation -67.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds