Wall clock time and date at job start Tue Mar 31 2020 16:25:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46834 * 2 1 4 4 C 1.53000 * 109.46834 * 179.97438 * 3 2 1 5 5 N 1.46497 * 109.47326 * 180.02562 * 4 3 2 6 6 C 1.36898 * 119.99516 * 283.83605 * 5 4 3 7 7 H 1.08007 * 119.99915 * 315.00852 * 6 5 4 8 8 C 1.39021 * 120.00142 * 135.02051 * 6 5 4 9 9 N 1.31379 * 119.99770 * 339.12895 * 8 6 5 10 10 Si 1.86797 * 120.00268 * 159.13432 * 8 6 5 11 11 H 1.48497 * 109.47317 * 64.99794 * 10 8 6 12 12 H 1.48495 * 109.47262 * 185.00007 * 10 8 6 13 13 H 1.48497 * 109.46991 * 304.99919 * 10 8 6 14 14 C 1.34770 * 120.00576 * 103.83375 * 5 4 3 15 15 O 1.21620 * 120.00361 * 186.40063 * 14 5 4 16 16 C 1.47493 * 119.99675 * 6.39654 * 14 5 4 17 17 C 1.39786 * 120.04049 * 323.83547 * 16 14 5 18 18 C 1.37792 * 120.05498 * 179.97438 * 17 16 14 19 19 C 1.38828 * 120.03015 * 0.03190 * 18 17 16 20 20 C 1.39698 * 120.20780 * 359.97438 * 19 18 17 21 21 C 1.37964 * 120.02177 * 359.97438 * 20 19 18 22 22 O 1.36026 * 119.45243 * 179.91183 * 20 19 18 23 23 C 1.43005 * 116.66237 * 327.23431 * 22 20 19 24 24 H 1.08999 * 109.45106 * 166.36537 * 23 22 20 25 25 C 1.52997 * 109.45165 * 286.31403 * 23 22 20 26 26 C 1.50747 * 109.59177 * 46.35379 * 23 22 20 27 27 O 1.21288 * 120.11252 * 148.70704 * 26 23 22 28 28 N 1.35152 * 119.80683 * 328.88995 * 26 23 22 29 29 H 1.08997 * 109.47150 * 299.99480 * 1 2 3 30 30 H 1.09001 * 109.47468 * 59.99520 * 1 2 3 31 31 H 1.09000 * 109.47237 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46661 * 240.00620 * 2 1 3 33 33 H 1.08994 * 109.47169 * 120.00727 * 2 1 3 34 34 H 1.09000 * 109.46990 * 60.00821 * 3 2 1 35 35 H 1.08992 * 109.47574 * 299.99841 * 3 2 1 36 36 H 1.09006 * 109.47270 * 60.00294 * 4 3 2 37 37 H 1.09001 * 109.47468 * 300.00480 * 4 3 2 38 38 H 0.96999 * 120.00181 * 185.04115 * 9 8 6 39 39 H 1.08006 * 119.97140 * 0.02562 * 17 16 14 40 40 H 1.08000 * 119.98785 * 179.97438 * 18 17 16 41 41 H 1.08004 * 120.12073 * 180.02562 * 21 20 19 42 42 H 1.09000 * 109.47215 * 60.00066 * 25 23 22 43 43 H 1.08999 * 109.47524 * 180.02562 * 25 23 22 44 44 H 1.09000 * 109.47106 * 300.00016 * 25 23 22 45 45 H 0.96998 * 120.53552 * 181.63887 * 28 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4425 0.0006 5 7 4.0583 2.8237 0.0013 6 6 4.0196 3.5638 -1.1498 7 1 4.3444 3.1281 -2.0831 8 6 3.5626 4.8763 -1.1172 9 7 2.8020 5.2826 -0.1260 10 14 4.0296 6.0622 -2.4828 11 1 3.4305 5.6047 -3.7622 12 1 3.5219 7.4187 -2.1556 13 1 5.5080 6.1059 -2.6163 14 6 4.5456 3.3658 1.1348 15 8 4.8424 4.5448 1.1665 16 6 4.7189 2.5291 2.3371 17 6 3.7958 1.5201 2.6265 18 6 3.9577 0.7379 3.7493 19 6 5.0377 0.9516 4.5950 20 6 5.9638 1.9583 4.3118 21 6 5.8075 2.7439 3.1885 22 8 7.0153 2.1555 5.1519 23 6 6.7853 1.8968 6.5394 24 1 7.7400 1.8536 7.0637 25 6 5.9291 3.0179 7.1317 26 6 6.0672 0.5806 6.6960 27 8 6.2555 -0.1019 7.6807 28 7 5.2156 0.1614 5.7339 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 1.6767 1.9563 0.8901 35 1 1.6767 1.9564 -0.8899 36 1 3.9337 0.9286 -0.8892 37 1 3.9330 0.9288 0.8908 38 1 2.4231 6.1754 -0.1398 39 1 2.9554 1.3528 1.9689 40 1 3.2436 -0.0411 3.9720 41 1 6.5228 3.5225 2.9677 42 1 4.9747 3.0620 6.6071 43 1 5.7540 2.8213 8.1894 44 1 6.4491 3.9695 7.0206 45 1 4.7301 -0.6723 5.8347 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001151202073.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:25:32 Heat of formation + Delta-G solvation = -54.942278 kcal Electronic energy + Delta-G solvation = -29295.360391 eV Core-core repulsion = 25279.261570 eV Total energy + Delta-G solvation = -4016.098821 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.58743 -39.43778 -38.39517 -37.07617 -35.60972 -35.00807 -33.45533 -32.19886 -31.68850 -30.20432 -29.11913 -28.22143 -25.21820 -24.92811 -23.82379 -23.05876 -22.54220 -20.65413 -20.09294 -19.48679 -18.61672 -17.92208 -17.03589 -16.40709 -15.99190 -15.71881 -15.54459 -14.97156 -14.85750 -14.66713 -14.44544 -14.16589 -13.79457 -13.68921 -13.42770 -13.15605 -12.89346 -12.74463 -12.63179 -12.53110 -12.28132 -11.99938 -11.72963 -11.36548 -11.31811 -11.10257 -10.98254 -10.89015 -10.76952 -10.63126 -10.55790 -10.38478 -10.21885 -10.08041 -9.89246 -8.82347 -8.51447 -8.21258 -7.74589 -7.18652 -6.18476 -3.90701 1.01571 1.43382 2.16004 2.66366 3.20299 3.27874 3.36146 3.39892 3.66363 3.86835 4.24756 4.50579 4.61521 4.65878 4.71028 4.82756 5.09274 5.15287 5.28189 5.29808 5.37016 5.41293 5.47258 5.49024 5.54522 5.71532 5.79232 5.84395 5.92836 6.05289 6.08134 6.12263 6.19177 6.21961 6.30770 6.32915 6.45531 6.47529 6.67891 6.75219 6.77256 6.79336 7.07160 7.35262 7.56330 7.64140 8.21239 8.96222 9.08078 9.56038 10.19304 10.89135 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.013011 B = 0.003895 C = 0.003154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2151.526993 B = 7187.038612 C = 8875.415913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.124 4.124 3 C -0.130 4.130 4 C 0.080 3.920 5 N -0.436 5.436 6 C -0.351 4.351 7 H 0.081 0.919 8 C 0.077 3.923 9 N -0.819 5.819 10 Si 0.911 3.089 11 H -0.279 1.279 12 H -0.286 1.286 13 H -0.272 1.272 14 C 0.501 3.499 15 O -0.528 6.528 16 C -0.078 4.078 17 C -0.110 4.110 18 C -0.129 4.129 19 C 0.081 3.919 20 C 0.072 3.928 21 C -0.069 4.069 22 O -0.298 6.298 23 C 0.079 3.921 24 H 0.148 0.852 25 C -0.178 4.178 26 C 0.496 3.504 27 O -0.522 6.522 28 N -0.653 5.653 29 H 0.052 0.948 30 H 0.054 0.946 31 H 0.047 0.953 32 H 0.059 0.941 33 H 0.055 0.945 34 H 0.062 0.938 35 H 0.077 0.923 36 H 0.056 0.944 37 H 0.080 0.920 38 H 0.266 0.734 39 H 0.157 0.843 40 H 0.131 0.869 41 H 0.144 0.856 42 H 0.068 0.932 43 H 0.079 0.921 44 H 0.086 0.914 45 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.055 -10.118 8.351 13.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.162 4.162 3 C -0.169 4.169 4 C -0.043 4.043 5 N -0.156 5.156 6 C -0.478 4.478 7 H 0.098 0.902 8 C -0.135 4.135 9 N -0.451 5.451 10 Si 0.738 3.262 11 H -0.204 1.204 12 H -0.211 1.211 13 H -0.198 1.198 14 C 0.289 3.711 15 O -0.406 6.406 16 C -0.082 4.082 17 C -0.129 4.129 18 C -0.150 4.150 19 C -0.014 4.014 20 C 0.026 3.974 21 C -0.089 4.089 22 O -0.213 6.213 23 C 0.019 3.981 24 H 0.165 0.835 25 C -0.235 4.235 26 C 0.283 3.717 27 O -0.397 6.397 28 N -0.300 5.300 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.066 0.934 32 H 0.078 0.922 33 H 0.074 0.926 34 H 0.081 0.919 35 H 0.095 0.905 36 H 0.074 0.926 37 H 0.097 0.903 38 H 0.076 0.924 39 H 0.174 0.826 40 H 0.149 0.851 41 H 0.162 0.838 42 H 0.087 0.913 43 H 0.098 0.902 44 H 0.105 0.895 45 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 0.568 -9.477 8.987 13.072 hybrid contribution -0.429 0.058 -0.458 0.630 sum 0.139 -9.419 8.528 12.707 Atomic orbital electron populations 1.21753 0.96315 1.00714 1.01966 1.21539 0.95563 0.97706 1.01404 1.21943 0.96346 0.95026 1.03541 1.22177 0.93667 0.86910 1.01561 1.43113 1.53043 1.10322 1.09101 1.18936 1.46513 0.95198 0.87137 0.90153 1.25259 0.93542 0.98340 0.96407 1.69814 1.25644 1.18872 1.30753 0.86295 0.79497 0.79767 0.80631 1.20447 1.21140 1.19761 1.17730 0.82744 0.87539 0.83128 1.90654 1.52143 1.15157 1.82688 1.20470 0.94482 0.96454 0.96824 1.21932 1.00452 0.94222 0.96252 1.20519 0.96551 1.02472 0.95420 1.18034 0.98046 0.95100 0.90259 1.18351 0.89050 0.96281 0.93737 1.20517 0.98203 0.97649 0.92578 1.86337 1.33539 1.85718 1.15739 1.22816 1.01674 0.91264 0.82317 0.83504 1.22342 1.00793 0.98470 1.01929 1.21532 0.79114 0.88750 0.82277 1.90774 1.63279 1.56303 1.29348 1.43583 1.44243 1.24239 1.17888 0.92905 0.92736 0.93434 0.92205 0.92600 0.91936 0.90460 0.92603 0.90258 0.92387 0.82563 0.85110 0.83841 0.91263 0.90225 0.89462 0.74785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 9.91 37.16 0.37 -1.37 16 2 C -0.12 -1.55 5.92 -26.73 -0.16 -1.71 16 3 C -0.13 -2.18 4.51 -26.73 -0.12 -2.30 16 4 C 0.08 1.46 4.86 -4.04 -0.02 1.44 16 5 N -0.44 -10.31 2.54 -116.01 -0.29 -10.60 16 6 C -0.35 -9.18 9.02 -15.00 -0.14 -9.31 16 7 H 0.08 2.02 7.92 -52.48 -0.42 1.61 16 8 C 0.08 2.07 4.30 -17.45 -0.08 2.00 16 9 N -0.82 -23.21 11.80 55.50 0.65 -22.55 16 10 Si 0.91 21.18 29.61 -169.99 -5.03 16.15 16 11 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 12 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 13 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 14 C 0.50 12.28 6.82 -12.49 -0.09 12.20 16 15 O -0.53 -15.21 14.43 5.26 0.08 -15.13 16 16 C -0.08 -1.51 5.45 -104.94 -0.57 -2.08 16 17 C -0.11 -1.74 7.36 -39.17 -0.29 -2.03 16 18 C -0.13 -1.67 9.92 -39.53 -0.39 -2.06 16 19 C 0.08 1.10 6.55 -83.48 -0.55 0.56 16 20 C 0.07 1.11 5.84 -39.14 -0.23 0.88 16 21 C -0.07 -1.24 9.56 -39.08 -0.37 -1.61 16 22 O -0.30 -4.26 10.18 -19.82 -0.20 -4.46 16 23 C 0.08 0.92 3.81 -27.86 -0.11 0.81 16 24 H 0.15 1.37 8.14 -51.93 -0.42 0.95 16 25 C -0.18 -1.83 9.30 37.16 0.35 -1.48 16 26 C 0.50 6.45 7.19 -10.79 -0.08 6.37 16 27 O -0.52 -7.90 17.95 5.55 0.10 -7.80 16 28 N -0.65 -7.80 5.46 -9.62 -0.05 -7.85 16 29 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.06 1.13 7.00 -51.93 -0.36 0.76 16 35 H 0.08 1.49 8.06 -51.93 -0.42 1.07 16 36 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.08 1.28 3.98 -51.93 -0.21 1.08 16 38 H 0.27 7.27 8.32 -40.82 -0.34 6.93 16 39 H 0.16 2.42 3.42 -52.48 -0.18 2.24 16 40 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 41 H 0.14 2.65 8.02 -52.48 -0.42 2.23 16 42 H 0.07 0.81 7.80 -51.93 -0.41 0.40 16 43 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 45 H 0.41 3.99 8.88 -40.82 -0.36 3.62 16 LS Contribution 368.31 15.07 5.55 5.55 Total: -1.00 -32.75 368.31 -7.80 -40.55 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: -6.13 Total: 5.84 kcal Atomic # 6 Polarization: 2.77 SS G_CDS: -2.46 Total: 0.31 kcal Atomic # 7 Polarization: -41.32 SS G_CDS: 0.31 Total: -41.01 kcal Atomic # 8 Polarization: -27.36 SS G_CDS: -0.03 Total: -27.39 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.03 Total: 16.15 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.75 -7.80 -40.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001151202073.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.391 kcal (2) G-P(sol) polarization free energy of solvation -32.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds