Wall clock time and date at job start Tue Mar 31 2020 16:25:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46834 * 2 1 4 4 C 1.53000 * 109.46834 * 179.97438 * 3 2 1 5 5 N 1.46497 * 109.47326 * 180.02562 * 4 3 2 6 6 C 1.36898 * 119.99516 * 283.83605 * 5 4 3 7 7 H 1.08007 * 119.99915 * 315.00852 * 6 5 4 8 8 C 1.39021 * 120.00142 * 135.02051 * 6 5 4 9 9 N 1.31379 * 119.99770 * 339.12895 * 8 6 5 10 10 Si 1.86797 * 120.00268 * 159.13432 * 8 6 5 11 11 H 1.48497 * 109.47317 * 64.99794 * 10 8 6 12 12 H 1.48495 * 109.47262 * 185.00007 * 10 8 6 13 13 H 1.48497 * 109.46991 * 304.99919 * 10 8 6 14 14 C 1.34770 * 120.00576 * 103.83375 * 5 4 3 15 15 O 1.21620 * 120.00361 * 186.40063 * 14 5 4 16 16 C 1.47493 * 119.99675 * 6.39654 * 14 5 4 17 17 C 1.39786 * 120.04049 * 323.83547 * 16 14 5 18 18 C 1.37792 * 120.05498 * 179.97438 * 17 16 14 19 19 C 1.38828 * 120.03015 * 0.03190 * 18 17 16 20 20 C 1.39698 * 120.20780 * 359.97438 * 19 18 17 21 21 C 1.37964 * 120.02177 * 359.97438 * 20 19 18 22 22 O 1.36026 * 119.45243 * 179.91183 * 20 19 18 23 23 C 1.43005 * 116.66237 * 327.23431 * 22 20 19 24 24 H 1.08999 * 109.45106 * 166.36537 * 23 22 20 25 25 C 1.52997 * 109.45165 * 286.31403 * 23 22 20 26 26 C 1.50747 * 109.59177 * 46.35379 * 23 22 20 27 27 O 1.21288 * 120.11252 * 148.70704 * 26 23 22 28 28 N 1.35152 * 119.80683 * 328.88995 * 26 23 22 29 29 H 1.08997 * 109.47150 * 299.99480 * 1 2 3 30 30 H 1.09001 * 109.47468 * 59.99520 * 1 2 3 31 31 H 1.09000 * 109.47237 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46661 * 240.00620 * 2 1 3 33 33 H 1.08994 * 109.47169 * 120.00727 * 2 1 3 34 34 H 1.09000 * 109.46990 * 60.00821 * 3 2 1 35 35 H 1.08992 * 109.47574 * 299.99841 * 3 2 1 36 36 H 1.09006 * 109.47270 * 60.00294 * 4 3 2 37 37 H 1.09001 * 109.47468 * 300.00480 * 4 3 2 38 38 H 0.96999 * 120.00181 * 185.04115 * 9 8 6 39 39 H 1.08006 * 119.97140 * 0.02562 * 17 16 14 40 40 H 1.08000 * 119.98785 * 179.97438 * 18 17 16 41 41 H 1.08004 * 120.12073 * 180.02562 * 21 20 19 42 42 H 1.09000 * 109.47215 * 60.00066 * 25 23 22 43 43 H 1.08999 * 109.47524 * 180.02562 * 25 23 22 44 44 H 1.09000 * 109.47106 * 300.00016 * 25 23 22 45 45 H 0.96998 * 120.53552 * 181.63887 * 28 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4425 0.0006 5 7 4.0583 2.8237 0.0013 6 6 4.0196 3.5638 -1.1498 7 1 4.3444 3.1281 -2.0831 8 6 3.5626 4.8763 -1.1172 9 7 2.8020 5.2826 -0.1260 10 14 4.0296 6.0622 -2.4828 11 1 3.4305 5.6047 -3.7622 12 1 3.5219 7.4187 -2.1556 13 1 5.5080 6.1059 -2.6163 14 6 4.5456 3.3658 1.1348 15 8 4.8424 4.5448 1.1665 16 6 4.7189 2.5291 2.3371 17 6 3.7958 1.5201 2.6265 18 6 3.9577 0.7379 3.7493 19 6 5.0377 0.9516 4.5950 20 6 5.9638 1.9583 4.3118 21 6 5.8075 2.7439 3.1885 22 8 7.0153 2.1555 5.1519 23 6 6.7853 1.8968 6.5394 24 1 7.7400 1.8536 7.0637 25 6 5.9291 3.0179 7.1317 26 6 6.0672 0.5806 6.6960 27 8 6.2555 -0.1019 7.6807 28 7 5.2156 0.1614 5.7339 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 1.6767 1.9563 0.8901 35 1 1.6767 1.9564 -0.8899 36 1 3.9337 0.9286 -0.8892 37 1 3.9330 0.9288 0.8908 38 1 2.4231 6.1754 -0.1398 39 1 2.9554 1.3528 1.9689 40 1 3.2436 -0.0411 3.9720 41 1 6.5228 3.5225 2.9677 42 1 4.9747 3.0620 6.6071 43 1 5.7540 2.8213 8.1894 44 1 6.4491 3.9695 7.0206 45 1 4.7301 -0.6723 5.8347 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001151202073.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:25:31 Heat of formation + Delta-G solvation = -76.528128 kcal Electronic energy + Delta-G solvation = -29296.296423 eV Core-core repulsion = 25279.261570 eV Total energy + Delta-G solvation = -4017.034853 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.89 seconds Orbital eigenvalues (eV) -42.70475 -40.93076 -39.65631 -38.37291 -37.15732 -36.22435 -35.04424 -33.71267 -32.96350 -31.45275 -30.45658 -29.56098 -26.95986 -25.93070 -25.10322 -24.35237 -23.90084 -21.85990 -21.56211 -20.75879 -19.90757 -19.03582 -18.56635 -17.79530 -17.24840 -17.15335 -16.75235 -16.58951 -16.20491 -15.93742 -15.72532 -15.60796 -15.10438 -14.97617 -14.90947 -14.32182 -14.15244 -14.02076 -13.97085 -13.57361 -13.46636 -13.17943 -13.14197 -12.83067 -12.77868 -12.67807 -12.43180 -12.33143 -12.23093 -11.98443 -11.95239 -11.76284 -11.54705 -11.26990 -11.12867 -10.78660 -10.10187 -9.74266 -9.11634 -8.97967 -8.20045 -5.95627 -0.24405 0.19967 1.06195 1.38933 1.47708 1.51272 1.64667 2.06356 2.25024 2.43947 2.81193 2.85781 3.13885 3.27174 3.52412 3.71159 3.84762 3.92471 4.09813 4.16845 4.20312 4.28015 4.31800 4.45713 4.53016 4.54740 4.64182 4.68788 4.77641 4.90390 4.94524 5.00885 5.04525 5.06588 5.11863 5.22797 5.35076 5.41908 5.43841 5.50030 5.52095 5.52923 5.66845 5.72908 6.19810 6.22823 6.65550 7.02418 7.19312 7.65751 8.31896 8.87835 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.013011 B = 0.003895 C = 0.003154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2151.526993 B = 7187.038612 C = 8875.415913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.115 4.115 3 C -0.118 4.118 4 C 0.077 3.923 5 N -0.450 5.450 6 C -0.369 4.369 7 H 0.083 0.917 8 C 0.031 3.969 9 N -0.857 5.857 10 Si 0.965 3.035 11 H -0.256 1.256 12 H -0.289 1.289 13 H -0.280 1.280 14 C 0.491 3.509 15 O -0.587 6.587 16 C -0.105 4.105 17 C -0.106 4.106 18 C -0.105 4.105 19 C 0.100 3.900 20 C 0.073 3.927 21 C -0.082 4.082 22 O -0.308 6.308 23 C 0.073 3.927 24 H 0.173 0.827 25 C -0.174 4.174 26 C 0.499 3.501 27 O -0.539 6.539 28 N -0.643 5.643 29 H 0.050 0.950 30 H 0.041 0.959 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.083 0.917 34 H 0.045 0.955 35 H 0.042 0.958 36 H 0.063 0.937 37 H 0.106 0.894 38 H 0.260 0.740 39 H 0.162 0.838 40 H 0.180 0.820 41 H 0.123 0.877 42 H 0.053 0.947 43 H 0.098 0.902 44 H 0.094 0.906 45 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.366 -13.311 10.008 16.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.153 4.153 3 C -0.157 4.157 4 C -0.045 4.045 5 N -0.169 5.169 6 C -0.496 4.496 7 H 0.100 0.900 8 C -0.178 4.178 9 N -0.491 5.491 10 Si 0.790 3.210 11 H -0.181 1.181 12 H -0.215 1.215 13 H -0.206 1.206 14 C 0.281 3.719 15 O -0.470 6.470 16 C -0.110 4.110 17 C -0.124 4.124 18 C -0.125 4.125 19 C 0.003 3.997 20 C 0.027 3.973 21 C -0.102 4.102 22 O -0.223 6.223 23 C 0.014 3.986 24 H 0.190 0.810 25 C -0.232 4.232 26 C 0.286 3.714 27 O -0.416 6.416 28 N -0.290 5.290 29 H 0.069 0.931 30 H 0.060 0.940 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.101 0.899 34 H 0.064 0.936 35 H 0.061 0.939 36 H 0.082 0.918 37 H 0.123 0.877 38 H 0.069 0.931 39 H 0.179 0.821 40 H 0.198 0.802 41 H 0.141 0.859 42 H 0.072 0.928 43 H 0.116 0.884 44 H 0.113 0.887 45 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges 0.125 -12.740 10.628 16.591 hybrid contribution -0.196 0.925 -0.800 1.239 sum -0.071 -11.814 9.828 15.368 Atomic orbital electron populations 1.21752 0.95543 1.02103 1.01329 1.21497 0.96167 0.94450 1.03194 1.21793 0.95090 0.97737 1.01036 1.22438 0.94651 0.84190 1.03193 1.43360 1.53150 1.12056 1.08344 1.19207 1.46240 0.95924 0.88225 0.89960 1.26010 0.93461 0.99871 0.98409 1.69922 1.27559 1.18707 1.32866 0.85451 0.78533 0.77725 0.79258 1.18085 1.21523 1.20585 1.18514 0.81327 0.87439 0.84637 1.90592 1.54391 1.17883 1.84122 1.20044 0.96908 0.98020 0.95999 1.21917 0.99541 0.93490 0.97495 1.20869 0.96436 1.02054 0.93173 1.18060 0.97184 0.94001 0.90406 1.18230 0.89648 0.96245 0.93169 1.20313 0.97971 0.98136 0.93801 1.86336 1.33231 1.85774 1.16979 1.23160 1.03289 0.91115 0.81004 0.80975 1.22343 0.99774 0.98361 1.02714 1.21688 0.78874 0.88823 0.81977 1.90781 1.63849 1.56882 1.30078 1.43494 1.44070 1.24507 1.16903 0.93102 0.93980 0.90941 0.91275 0.89866 0.93591 0.93924 0.91843 0.87651 0.93099 0.82102 0.80226 0.85943 0.92753 0.88367 0.88731 0.73016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.12 9.91 71.98 0.71 -2.40 16 2 C -0.12 -2.57 5.92 30.60 0.18 -2.39 16 3 C -0.12 -3.92 4.51 30.60 0.14 -3.78 16 4 C 0.08 2.80 4.86 86.38 0.42 3.22 16 5 N -0.45 -22.06 2.54 -639.19 -1.62 -23.68 16 6 C -0.37 -20.08 9.02 84.09 0.76 -19.32 16 7 H 0.08 4.29 7.92 -2.91 -0.02 4.27 16 8 C 0.03 1.72 4.30 84.95 0.37 2.09 16 9 N -0.86 -51.25 11.80 21.68 0.26 -50.99 16 10 Si 0.97 45.19 29.61 68.60 2.03 47.22 16 11 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 12 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 13 H -0.28 -13.30 7.11 99.48 0.71 -12.60 16 14 C 0.49 25.26 6.82 86.68 0.59 25.85 16 15 O -0.59 -36.05 14.43 -4.09 -0.06 -36.11 16 16 C -0.11 -4.15 5.45 -20.07 -0.11 -4.26 16 17 C -0.11 -3.14 7.36 22.54 0.17 -2.97 16 18 C -0.11 -2.27 9.92 22.31 0.22 -2.05 16 19 C 0.10 2.38 6.55 38.37 0.25 2.63 16 20 C 0.07 2.16 5.84 22.56 0.13 2.29 16 21 C -0.08 -2.99 9.56 22.60 0.22 -2.78 16 22 O -0.31 -8.31 10.18 -93.84 -0.96 -9.27 16 23 C 0.07 1.51 3.81 29.86 0.11 1.62 16 24 H 0.17 2.69 8.14 -2.39 -0.02 2.67 16 25 C -0.17 -3.19 9.30 71.98 0.67 -2.52 16 26 C 0.50 11.29 7.19 87.61 0.63 11.92 16 27 O -0.54 -14.55 17.95 -3.06 -0.05 -14.61 16 28 N -0.64 -12.71 5.46 -302.51 -1.65 -14.36 16 29 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.05 1.66 7.00 -2.39 -0.02 1.65 16 35 H 0.04 1.69 8.06 -2.39 -0.02 1.67 16 36 H 0.06 2.17 8.14 -2.38 -0.02 2.15 16 37 H 0.11 3.23 3.98 -2.39 -0.01 3.22 16 38 H 0.26 15.06 8.32 -92.71 -0.77 14.29 16 39 H 0.16 4.65 3.42 -2.91 -0.01 4.64 16 40 H 0.18 2.21 8.06 -2.91 -0.02 2.19 16 41 H 0.12 4.87 8.02 -2.91 -0.02 4.85 16 42 H 0.05 1.16 7.80 -2.39 -0.02 1.14 16 43 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 44 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 45 H 0.43 6.13 8.88 -92.71 -0.82 5.31 16 Total: -1.00 -76.91 368.31 3.61 -73.30 By element: Atomic # 1 Polarization: 21.15 SS G_CDS: 0.21 Total: 21.36 kcal Atomic # 6 Polarization: 1.69 SS G_CDS: 5.46 Total: 7.14 kcal Atomic # 7 Polarization: -86.02 SS G_CDS: -3.02 Total: -89.04 kcal Atomic # 8 Polarization: -58.92 SS G_CDS: -1.07 Total: -59.99 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.22 kcal Total: -76.91 3.61 -73.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001151202073.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.228 kcal (2) G-P(sol) polarization free energy of solvation -76.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.89 seconds