Wall clock time and date at job start Tue Mar 31 2020 17:23:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47512 * 2 1 4 4 O 1.42902 * 109.47123 * 119.99887 * 2 1 3 5 5 C 1.35984 * 117.00232 * 178.45086 * 4 2 1 6 6 C 1.38693 * 120.00001 * 175.24507 * 5 4 2 7 7 C 1.38132 * 119.99818 * 180.02562 * 6 5 4 8 8 C 1.38698 * 120.00349 * 359.97438 * 7 6 5 9 9 O 1.35976 * 120.00401 * 179.97438 * 8 7 6 10 10 C 1.38698 * 119.99572 * 0.25370 * 8 7 6 11 11 C 1.38139 * 119.99925 * 359.49575 * 10 8 7 12 12 C 1.50704 * 109.46868 * 239.99499 * 2 1 3 13 13 O 1.21283 * 119.99785 * 244.65669 * 12 2 1 14 14 N 1.34769 * 119.99729 * 64.66335 * 12 2 1 15 15 C 1.46506 * 120.00208 * 4.53584 * 14 12 2 16 16 C 1.50706 * 109.46529 * 96.18344 * 15 14 12 17 17 H 1.07994 * 120.00110 * 359.97438 * 16 15 14 18 18 C 1.37880 * 119.99334 * 179.97438 * 16 15 14 19 19 N 1.31516 * 119.99608 * 179.97438 * 18 16 15 20 20 Si 1.86800 * 120.00108 * 359.97438 * 18 16 15 21 21 H 1.48504 * 109.47098 * 90.00125 * 20 18 16 22 22 H 1.48503 * 109.46913 * 209.99692 * 20 18 16 23 23 H 1.48493 * 109.47555 * 330.00080 * 20 18 16 24 24 C 1.46499 * 119.99954 * 184.54609 * 14 12 2 25 25 C 1.53001 * 109.47630 * 94.27617 * 24 14 12 26 26 C 1.47201 * 109.47310 * 184.91178 * 25 24 14 27 27 N 6.96841 * 92.05890 * 242.15874 * 2 1 3 28 28 H 1.09005 * 109.46550 * 318.63313 * 1 2 3 29 29 H 1.09000 * 109.47064 * 78.63254 * 1 2 3 30 30 H 1.08998 * 109.47144 * 198.64059 * 1 2 3 31 31 H 1.08998 * 109.47092 * 189.13215 * 3 2 1 32 32 H 1.09004 * 109.46795 * 309.13084 * 3 2 1 33 33 H 1.09000 * 109.47525 * 69.13141 * 3 2 1 34 34 H 1.08001 * 120.00418 * 359.97438 * 6 5 4 35 35 H 1.08000 * 119.99965 * 179.97438 * 7 6 5 36 36 H 0.96703 * 113.99972 * 90.00093 * 9 8 7 37 37 H 1.07998 * 120.00198 * 179.72435 * 10 8 7 38 38 H 1.08003 * 119.99792 * 180.22622 * 11 10 8 39 39 H 1.08999 * 109.47010 * 216.17722 * 15 14 12 40 40 H 1.08998 * 109.46895 * 336.18577 * 15 14 12 41 41 H 0.96994 * 119.99592 * 180.02562 * 19 18 16 42 42 H 1.09000 * 109.47051 * 214.28115 * 24 14 12 43 43 H 1.09003 * 109.46696 * 334.27427 * 24 14 12 44 44 H 1.09002 * 109.46808 * 304.90914 * 25 24 14 45 45 H 1.08995 * 109.46896 * 64.90850 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 3.3540 -0.7912 1.3049 6 6 3.8872 -1.3450 2.4593 7 6 5.2562 -1.4639 2.5998 8 6 6.0976 -1.0300 1.5862 9 8 7.4453 -1.1465 1.7247 10 6 5.5646 -0.4718 0.4338 11 6 4.1954 -0.3576 0.2911 12 6 2.0323 -0.7105 -1.2305 13 8 2.6583 -1.7436 -1.1211 14 7 1.7859 -0.1980 -2.4523 15 6 1.1173 1.0992 -2.5813 16 6 2.1509 2.1815 -2.7588 17 1 3.2007 1.9285 -2.7736 18 6 1.7562 3.4948 -2.9024 19 7 2.6581 4.4394 -3.0568 20 14 -0.0597 3.9323 -2.8775 21 1 -0.4810 4.2180 -1.4824 22 1 -0.2911 5.1330 -3.7202 23 1 -0.8506 2.7939 -3.4100 24 6 2.1865 -0.9380 -3.6515 25 6 1.0086 -1.7774 -4.1502 26 6 1.4441 -2.6099 -5.2833 27 7 1.7804 -3.2523 -6.1578 28 1 -0.3632 0.7713 0.6792 29 1 -0.3633 0.2026 -1.0075 30 1 -0.3633 -0.9737 0.3285 31 1 3.1178 1.4467 -0.1631 32 1 1.5497 2.0012 -0.7972 33 1 1.8161 1.9071 0.9602 34 1 3.2320 -1.6826 3.2488 35 1 5.6713 -1.8948 3.4988 36 1 7.8037 -1.9821 1.3953 37 1 6.2199 -0.1297 -0.3536 38 1 3.7802 0.0737 -0.6078 39 1 0.4562 1.0826 -3.4477 40 1 0.5337 1.2981 -1.6825 41 1 2.3804 5.3632 -3.1574 42 1 2.4868 -0.2352 -4.4287 43 1 3.0237 -1.5934 -3.4111 44 1 0.6524 -2.4187 -3.3440 45 1 0.2031 -1.1176 -4.4725 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001183603412.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:23:15 Heat of formation + Delta-G solvation = -23.454325 kcal Electronic energy + Delta-G solvation = -29954.294951 eV Core-core repulsion = 25939.561551 eV Total energy + Delta-G solvation = -4014.733400 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.26445 -39.25330 -38.01010 -36.72215 -35.93419 -35.63470 -33.59273 -32.71246 -31.00493 -30.69959 -28.64889 -28.18950 -26.96806 -24.69390 -23.38244 -22.73999 -22.24437 -21.29529 -19.29536 -18.27765 -17.76429 -17.40731 -17.09330 -16.37165 -16.03357 -15.48789 -15.39994 -15.09767 -14.76447 -14.61520 -14.22756 -14.01007 -13.75196 -13.51658 -13.38408 -13.17324 -12.86211 -12.75815 -12.61582 -12.49221 -12.32015 -12.21303 -11.94461 -11.83012 -11.79021 -11.48709 -11.28179 -11.10574 -10.97124 -10.82072 -10.55274 -10.44661 -10.28266 -10.02584 -9.77025 -9.25408 -8.90090 -8.74352 -8.16312 -7.64042 -6.40129 -4.42409 1.57031 1.57778 2.67312 2.83582 2.91461 3.02260 3.08055 3.13165 3.23859 3.49317 3.88784 4.07707 4.17201 4.46767 4.71425 4.88979 4.97439 5.08634 5.11935 5.13403 5.16345 5.20146 5.48645 5.48861 5.55063 5.70631 5.81207 5.86179 5.88622 6.01767 6.10896 6.14458 6.17076 6.19248 6.28380 6.35407 6.46166 6.63041 6.68349 6.81658 6.92441 7.03337 7.20168 7.54815 7.59657 7.73458 7.85147 8.15755 8.46814 8.65616 9.15083 10.71569 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.009002 B = 0.005014 C = 0.004009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3109.588707 B = 5582.826785 C = 6982.928582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.101 3.899 3 C -0.213 4.213 4 O -0.293 6.293 5 C 0.142 3.858 6 C -0.144 4.144 7 C -0.115 4.115 8 C 0.056 3.944 9 O -0.500 6.500 10 C -0.108 4.108 11 C -0.159 4.159 12 C 0.497 3.503 13 O -0.542 6.542 14 N -0.583 5.583 15 C 0.183 3.817 16 C -0.545 4.545 17 H 0.082 0.918 18 C 0.080 3.920 19 N -0.880 5.880 20 Si 0.859 3.141 21 H -0.269 1.269 22 H -0.281 1.281 23 H -0.261 1.261 24 C 0.122 3.878 25 C -0.045 4.045 26 C 0.219 3.781 27 N -0.445 5.445 28 H 0.078 0.922 29 H 0.092 0.908 30 H 0.071 0.929 31 H 0.077 0.923 32 H 0.138 0.862 33 H 0.060 0.940 34 H 0.129 0.871 35 H 0.128 0.872 36 H 0.381 0.619 37 H 0.126 0.874 38 H 0.143 0.857 39 H 0.038 0.962 40 H 0.053 0.947 41 H 0.269 0.731 42 H 0.095 0.905 43 H 0.087 0.913 44 H 0.108 0.892 45 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.366 -7.864 7.179 11.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.060 3.940 3 C -0.269 4.269 4 O -0.206 6.206 5 C 0.097 3.903 6 C -0.163 4.163 7 C -0.134 4.134 8 C 0.012 3.988 9 O -0.309 6.309 10 C -0.127 4.127 11 C -0.178 4.178 12 C 0.285 3.715 13 O -0.421 6.421 14 N -0.315 5.315 15 C 0.062 3.938 16 C -0.583 4.583 17 H 0.100 0.900 18 C -0.125 4.125 19 N -0.516 5.516 20 Si 0.685 3.315 21 H -0.194 1.194 22 H -0.206 1.206 23 H -0.185 1.185 24 C -0.003 4.003 25 C -0.086 4.086 26 C -0.099 4.099 27 N -0.122 5.122 28 H 0.096 0.904 29 H 0.110 0.890 30 H 0.090 0.910 31 H 0.096 0.904 32 H 0.155 0.845 33 H 0.079 0.921 34 H 0.147 0.853 35 H 0.146 0.854 36 H 0.236 0.764 37 H 0.144 0.856 38 H 0.161 0.839 39 H 0.056 0.944 40 H 0.070 0.930 41 H 0.080 0.920 42 H 0.113 0.887 43 H 0.105 0.895 44 H 0.126 0.874 45 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -2.717 -8.637 6.277 11.017 hybrid contribution -0.818 0.398 -0.163 0.924 sum -3.536 -8.239 6.114 10.851 Atomic orbital electron populations 1.22019 0.89984 1.03831 1.04383 1.21774 0.96308 0.93200 0.82752 1.23525 1.04925 0.92851 1.05571 1.86131 1.19192 1.73806 1.41483 1.18792 0.82552 0.95166 0.93825 1.20156 0.94459 1.04752 0.96908 1.21033 0.92396 1.00721 0.99206 1.18281 0.82743 1.03297 0.94510 1.84862 1.18284 1.42564 1.85191 1.21207 0.94970 0.99496 0.96990 1.21633 0.93504 1.03141 0.99497 1.20949 0.79884 0.85243 0.85454 1.90738 1.40302 1.24739 1.86275 1.47830 1.58611 1.21090 1.03922 1.20535 0.94304 0.80360 0.98578 1.21242 0.94763 0.90162 1.52110 0.89983 1.24856 0.97247 0.96214 0.94193 1.69864 1.33490 1.01060 1.47150 0.87109 0.85828 0.79315 0.79233 1.19375 1.20630 1.18517 1.21192 0.95219 0.95483 0.88408 1.19748 1.00942 0.96681 0.91244 1.29019 0.93322 0.93522 0.94058 1.81194 1.08827 1.10572 1.11630 0.90351 0.88991 0.91029 0.90430 0.84475 0.92080 0.85259 0.85375 0.76448 0.85560 0.83941 0.94390 0.93016 0.92038 0.88654 0.89456 0.87419 0.86996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 8.37 37.16 0.31 -1.57 16 2 C 0.10 1.63 0.84 -91.77 -0.08 1.56 16 3 C -0.21 -3.70 6.87 37.16 0.26 -3.45 16 4 O -0.29 -5.00 9.62 -39.56 -0.38 -5.38 16 5 C 0.14 2.45 5.57 -39.25 -0.22 2.24 16 6 C -0.14 -2.16 9.98 -39.45 -0.39 -2.56 16 7 C -0.12 -1.61 9.98 -39.45 -0.39 -2.01 16 8 C 0.06 0.85 6.70 -39.24 -0.26 0.58 16 9 O -0.50 -6.62 13.50 -19.66 -0.27 -6.89 16 10 C -0.11 -1.81 9.98 -39.45 -0.39 -2.20 16 11 C -0.16 -2.87 5.90 -39.45 -0.23 -3.10 16 12 C 0.50 8.56 4.30 -10.99 -0.05 8.51 16 13 O -0.54 -10.47 13.44 -14.31 -0.19 -10.66 16 14 N -0.58 -9.42 2.43 -175.05 -0.43 -9.85 16 15 C 0.18 3.18 3.05 -5.19 -0.02 3.16 16 16 C -0.54 -11.98 7.45 -34.44 -0.26 -12.24 16 17 H 0.08 2.08 8.06 -52.49 -0.42 1.65 16 18 C 0.08 1.88 5.28 -17.82 -0.09 1.79 16 19 N -0.88 -23.03 13.96 55.43 0.77 -22.26 16 20 Si 0.86 17.01 27.36 -169.99 -4.65 12.36 16 21 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 22 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 23 H -0.26 -4.68 6.54 56.52 0.37 -4.32 16 24 C 0.12 1.74 5.46 -4.04 -0.02 1.72 16 25 C -0.04 -0.50 6.03 -29.52 -0.18 -0.68 16 26 C 0.22 2.90 15.43 -20.76 -0.32 2.58 16 27 N -0.44 -7.04 18.54 42.15 0.78 -6.26 16 28 H 0.08 0.90 8.00 -51.93 -0.42 0.49 16 29 H 0.09 1.12 5.51 -51.93 -0.29 0.83 16 30 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 31 H 0.08 1.49 5.00 -51.93 -0.26 1.23 16 32 H 0.14 2.55 3.00 -51.93 -0.16 2.40 16 33 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.13 1.65 8.06 -52.49 -0.42 1.23 16 35 H 0.13 1.45 8.06 -52.49 -0.42 1.03 16 36 H 0.38 3.19 9.06 45.56 0.41 3.60 16 37 H 0.13 2.00 8.06 -52.49 -0.42 1.57 16 38 H 0.14 2.77 3.50 -52.48 -0.18 2.58 16 39 H 0.04 0.63 7.17 -51.93 -0.37 0.26 16 40 H 0.05 0.86 2.37 -51.93 -0.12 0.73 16 41 H 0.27 6.69 8.31 -40.82 -0.34 6.35 16 42 H 0.10 1.38 8.10 -51.93 -0.42 0.96 16 43 H 0.09 1.33 7.24 -51.93 -0.38 0.95 16 44 H 0.11 1.12 8.14 -51.93 -0.42 0.70 16 45 H 0.11 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 362.87 15.07 5.47 5.47 Total: -1.00 -29.52 362.87 -5.96 -35.48 By element: Atomic # 1 Polarization: 18.37 SS G_CDS: -4.73 Total: 13.65 kcal Atomic # 6 Polarization: -3.33 SS G_CDS: -2.34 Total: -5.67 kcal Atomic # 7 Polarization: -39.49 SS G_CDS: 1.13 Total: -38.36 kcal Atomic # 8 Polarization: -22.09 SS G_CDS: -0.84 Total: -22.93 kcal Atomic # 14 Polarization: 17.01 SS G_CDS: -4.65 Total: 12.36 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -29.52 -5.96 -35.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183603412.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.030 kcal (2) G-P(sol) polarization free energy of solvation -29.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds