Wall clock time and date at job start Tue Mar 31 2020 17:23:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47512 * 2 1 4 4 O 1.42902 * 109.47123 * 119.99887 * 2 1 3 5 5 C 1.35984 * 117.00232 * 178.45086 * 4 2 1 6 6 C 1.38693 * 120.00001 * 175.24507 * 5 4 2 7 7 C 1.38132 * 119.99818 * 180.02562 * 6 5 4 8 8 C 1.38698 * 120.00349 * 359.97438 * 7 6 5 9 9 O 1.35976 * 120.00401 * 179.97438 * 8 7 6 10 10 C 1.38698 * 119.99572 * 0.25370 * 8 7 6 11 11 C 1.38139 * 119.99925 * 359.49575 * 10 8 7 12 12 C 1.50704 * 109.46868 * 239.99499 * 2 1 3 13 13 O 1.21283 * 119.99785 * 244.65669 * 12 2 1 14 14 N 1.34769 * 119.99729 * 64.66335 * 12 2 1 15 15 C 1.46506 * 120.00208 * 4.53584 * 14 12 2 16 16 C 1.50706 * 109.46529 * 96.18344 * 15 14 12 17 17 H 1.07994 * 120.00110 * 359.97438 * 16 15 14 18 18 C 1.37880 * 119.99334 * 179.97438 * 16 15 14 19 19 N 1.31516 * 119.99608 * 179.97438 * 18 16 15 20 20 Si 1.86800 * 120.00108 * 359.97438 * 18 16 15 21 21 H 1.48504 * 109.47098 * 90.00125 * 20 18 16 22 22 H 1.48503 * 109.46913 * 209.99692 * 20 18 16 23 23 H 1.48493 * 109.47555 * 330.00080 * 20 18 16 24 24 C 1.46499 * 119.99954 * 184.54609 * 14 12 2 25 25 C 1.53001 * 109.47630 * 94.27617 * 24 14 12 26 26 C 1.47201 * 109.47310 * 184.91178 * 25 24 14 27 27 N 6.96841 * 92.05890 * 242.15874 * 2 1 3 28 28 H 1.09005 * 109.46550 * 318.63313 * 1 2 3 29 29 H 1.09000 * 109.47064 * 78.63254 * 1 2 3 30 30 H 1.08998 * 109.47144 * 198.64059 * 1 2 3 31 31 H 1.08998 * 109.47092 * 189.13215 * 3 2 1 32 32 H 1.09004 * 109.46795 * 309.13084 * 3 2 1 33 33 H 1.09000 * 109.47525 * 69.13141 * 3 2 1 34 34 H 1.08001 * 120.00418 * 359.97438 * 6 5 4 35 35 H 1.08000 * 119.99965 * 179.97438 * 7 6 5 36 36 H 0.96703 * 113.99972 * 90.00093 * 9 8 7 37 37 H 1.07998 * 120.00198 * 179.72435 * 10 8 7 38 38 H 1.08003 * 119.99792 * 180.22622 * 11 10 8 39 39 H 1.08999 * 109.47010 * 216.17722 * 15 14 12 40 40 H 1.08998 * 109.46895 * 336.18577 * 15 14 12 41 41 H 0.96994 * 119.99592 * 180.02562 * 19 18 16 42 42 H 1.09000 * 109.47051 * 214.28115 * 24 14 12 43 43 H 1.09003 * 109.46696 * 334.27427 * 24 14 12 44 44 H 1.09002 * 109.46808 * 304.90914 * 25 24 14 45 45 H 1.08995 * 109.46896 * 64.90850 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 3.3540 -0.7912 1.3049 6 6 3.8872 -1.3450 2.4593 7 6 5.2562 -1.4639 2.5998 8 6 6.0976 -1.0300 1.5862 9 8 7.4453 -1.1465 1.7247 10 6 5.5646 -0.4718 0.4338 11 6 4.1954 -0.3576 0.2911 12 6 2.0323 -0.7105 -1.2305 13 8 2.6583 -1.7436 -1.1211 14 7 1.7859 -0.1980 -2.4523 15 6 1.1173 1.0992 -2.5813 16 6 2.1509 2.1815 -2.7588 17 1 3.2007 1.9285 -2.7736 18 6 1.7562 3.4948 -2.9024 19 7 2.6581 4.4394 -3.0568 20 14 -0.0597 3.9323 -2.8775 21 1 -0.4810 4.2180 -1.4824 22 1 -0.2911 5.1330 -3.7202 23 1 -0.8506 2.7939 -3.4100 24 6 2.1865 -0.9380 -3.6515 25 6 1.0086 -1.7774 -4.1502 26 6 1.4441 -2.6099 -5.2833 27 7 1.7804 -3.2523 -6.1578 28 1 -0.3632 0.7713 0.6792 29 1 -0.3633 0.2026 -1.0075 30 1 -0.3633 -0.9737 0.3285 31 1 3.1178 1.4467 -0.1631 32 1 1.5497 2.0012 -0.7972 33 1 1.8161 1.9071 0.9602 34 1 3.2320 -1.6826 3.2488 35 1 5.6713 -1.8948 3.4988 36 1 7.8037 -1.9821 1.3953 37 1 6.2199 -0.1297 -0.3536 38 1 3.7802 0.0737 -0.6078 39 1 0.4562 1.0826 -3.4477 40 1 0.5337 1.2981 -1.6825 41 1 2.3804 5.3632 -3.1574 42 1 2.4868 -0.2352 -4.4287 43 1 3.0237 -1.5934 -3.4111 44 1 0.6524 -2.4187 -3.3440 45 1 0.2031 -1.1176 -4.4725 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001183603412.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:23:14 Heat of formation + Delta-G solvation = -42.420184 kcal Electronic energy + Delta-G solvation = -29955.117372 eV Core-core repulsion = 25939.561551 eV Total energy + Delta-G solvation = -4015.555822 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.55721 -40.47763 -39.21915 -37.89086 -37.27589 -36.85244 -34.90856 -34.31792 -32.22593 -31.89511 -30.00242 -29.63940 -28.14519 -25.89720 -24.85032 -24.13780 -23.45737 -22.53863 -20.57945 -19.44364 -19.13760 -18.75053 -18.48874 -17.67193 -17.32463 -16.76757 -16.62171 -16.27319 -16.17298 -15.83121 -15.51805 -15.29419 -15.03898 -14.71489 -14.59465 -14.47159 -14.43395 -13.98278 -13.81790 -13.65578 -13.52722 -13.38555 -13.19481 -13.11276 -12.96181 -12.74813 -12.57408 -12.46911 -12.42373 -11.98164 -11.85919 -11.78540 -11.71568 -11.45528 -11.23515 -10.71116 -10.55386 -9.98551 -9.54786 -8.89108 -8.20677 -6.26372 0.33613 0.36354 1.47090 1.49418 1.51750 1.58650 1.65889 1.77664 2.01440 2.26520 2.42828 2.68641 3.10025 3.15371 3.36672 3.43565 3.79664 3.85065 3.91550 3.95322 4.07823 4.11924 4.29052 4.41390 4.52181 4.58907 4.66021 4.69430 4.78701 4.82640 4.87648 4.89116 4.94407 4.98858 5.02960 5.17885 5.20582 5.39105 5.45169 5.47071 5.56613 5.59807 5.71639 6.17917 6.31739 6.53689 6.54651 6.78269 6.88136 7.13608 7.36045 8.94992 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.009002 B = 0.005014 C = 0.004009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3109.588707 B = 5582.826785 C = 6982.928582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.099 3.901 3 C -0.205 4.205 4 O -0.295 6.295 5 C 0.120 3.880 6 C -0.141 4.141 7 C -0.108 4.108 8 C 0.060 3.940 9 O -0.505 6.505 10 C -0.132 4.132 11 C -0.176 4.176 12 C 0.497 3.503 13 O -0.566 6.566 14 N -0.581 5.581 15 C 0.186 3.814 16 C -0.529 4.529 17 H 0.030 0.970 18 C 0.022 3.978 19 N -0.942 5.942 20 Si 0.918 3.082 21 H -0.256 1.256 22 H -0.298 1.298 23 H -0.217 1.217 24 C 0.119 3.881 25 C -0.030 4.030 26 C 0.243 3.757 27 N -0.492 5.492 28 H 0.095 0.905 29 H 0.104 0.896 30 H 0.086 0.914 31 H 0.048 0.952 32 H 0.127 0.873 33 H 0.071 0.929 34 H 0.156 0.844 35 H 0.163 0.837 36 H 0.404 0.596 37 H 0.120 0.880 38 H 0.120 0.880 39 H 0.066 0.934 40 H 0.074 0.926 41 H 0.265 0.735 42 H 0.087 0.913 43 H 0.070 0.930 44 H 0.125 0.875 45 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.169 -9.295 8.857 14.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.058 3.942 3 C -0.262 4.262 4 O -0.208 6.208 5 C 0.075 3.925 6 C -0.159 4.159 7 C -0.126 4.126 8 C 0.016 3.984 9 O -0.318 6.318 10 C -0.151 4.151 11 C -0.195 4.195 12 C 0.286 3.714 13 O -0.446 6.446 14 N -0.312 5.312 15 C 0.065 3.935 16 C -0.567 4.567 17 H 0.049 0.951 18 C -0.177 4.177 19 N -0.582 5.582 20 Si 0.740 3.260 21 H -0.181 1.181 22 H -0.225 1.225 23 H -0.139 1.139 24 C -0.006 4.006 25 C -0.071 4.071 26 C -0.075 4.075 27 N -0.170 5.170 28 H 0.114 0.886 29 H 0.122 0.878 30 H 0.105 0.895 31 H 0.067 0.933 32 H 0.144 0.856 33 H 0.090 0.910 34 H 0.174 0.826 35 H 0.181 0.819 36 H 0.262 0.738 37 H 0.138 0.862 38 H 0.137 0.863 39 H 0.083 0.917 40 H 0.091 0.909 41 H 0.074 0.926 42 H 0.106 0.894 43 H 0.088 0.912 44 H 0.143 0.857 45 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -5.523 -10.124 7.945 14.004 hybrid contribution 0.299 0.814 -0.634 1.074 sum -5.224 -9.310 7.311 12.939 Atomic orbital electron populations 1.22130 0.86932 1.05485 1.05692 1.21919 0.98448 0.91683 0.82133 1.23382 1.03046 0.94174 1.05583 1.86118 1.19049 1.73946 1.41709 1.19061 0.82657 0.96264 0.94548 1.20549 0.95330 1.03464 0.96565 1.21394 0.91891 0.99590 0.99766 1.18352 0.83681 1.02397 0.93985 1.84798 1.17253 1.44474 1.85242 1.21314 0.94736 1.00907 0.98132 1.21506 0.94256 1.04366 0.99385 1.21192 0.79313 0.84964 0.85961 1.90718 1.41238 1.26080 1.86597 1.47781 1.58415 1.20687 1.04289 1.20493 0.93249 0.79205 1.00513 1.21361 0.93590 0.91583 1.50179 0.95150 1.25719 1.02065 0.95980 0.93946 1.70059 1.36311 1.01410 1.50375 0.86156 0.80349 0.79713 0.79735 1.18081 1.22481 1.13918 1.21210 0.96375 0.95372 0.87626 1.19749 0.99927 0.96569 0.90808 1.29305 0.92027 0.92587 0.93546 1.81222 1.10173 1.12260 1.13341 0.88633 0.87788 0.89519 0.93288 0.85561 0.91020 0.82592 0.81921 0.73777 0.86221 0.86290 0.91658 0.90860 0.92564 0.89424 0.91162 0.85708 0.83772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.25 8.37 71.98 0.60 -2.65 16 2 C 0.10 3.10 0.84 -11.54 -0.01 3.09 16 3 C -0.21 -7.18 6.87 71.98 0.49 -6.69 16 4 O -0.29 -9.71 9.62 -74.37 -0.72 -10.43 16 5 C 0.12 4.10 5.57 22.49 0.13 4.22 16 6 C -0.14 -3.94 9.98 22.35 0.22 -3.72 16 7 C -0.11 -2.79 9.98 22.35 0.22 -2.56 16 8 C 0.06 1.78 6.70 22.49 0.15 1.93 16 9 O -0.51 -12.68 13.50 -93.28 -1.26 -13.94 16 10 C -0.13 -4.60 9.98 22.36 0.22 -4.38 16 11 C -0.18 -6.62 5.90 22.35 0.13 -6.49 16 12 C 0.50 16.88 4.30 87.66 0.38 17.26 16 13 O -0.57 -21.98 13.44 15.96 0.21 -21.76 16 14 N -0.58 -18.27 2.43 -826.13 -2.01 -20.28 16 15 C 0.19 6.12 3.05 85.63 0.26 6.38 16 16 C -0.53 -23.76 7.45 25.60 0.19 -23.57 16 17 H 0.03 1.65 8.06 -2.91 -0.02 1.62 16 18 C 0.02 1.05 5.28 84.66 0.45 1.50 16 19 N -0.94 -51.76 13.96 21.45 0.30 -51.46 16 20 Si 0.92 33.57 27.36 68.60 1.88 35.45 16 21 H -0.26 -8.86 7.11 99.48 0.71 -8.15 16 22 H -0.30 -11.76 7.11 99.48 0.71 -11.06 16 23 H -0.22 -6.39 6.54 99.48 0.65 -5.74 16 24 C 0.12 3.32 5.46 86.38 0.47 3.79 16 25 C -0.03 -0.58 6.03 28.79 0.17 -0.41 16 26 C 0.24 6.07 15.43 89.44 1.38 7.45 16 27 N -0.49 -15.28 18.54 20.01 0.37 -14.90 16 28 H 0.09 1.82 8.00 -2.38 -0.02 1.80 16 29 H 0.10 2.04 5.51 -2.39 -0.01 2.03 16 30 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 31 H 0.05 1.99 5.00 -2.39 -0.01 1.97 16 32 H 0.13 4.65 3.00 -2.39 -0.01 4.64 16 33 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 34 H 0.16 3.47 8.06 -2.91 -0.02 3.44 16 35 H 0.16 3.03 8.06 -2.91 -0.02 3.01 16 36 H 0.40 6.06 9.06 -74.06 -0.67 5.39 16 37 H 0.12 4.12 8.06 -2.91 -0.02 4.10 16 38 H 0.12 4.96 3.50 -2.91 -0.01 4.95 16 39 H 0.07 1.87 7.17 -2.39 -0.02 1.85 16 40 H 0.07 2.19 2.37 -2.39 -0.01 2.18 16 41 H 0.27 13.86 8.31 -92.71 -0.77 13.09 16 42 H 0.09 2.56 8.10 -2.39 -0.02 2.54 16 43 H 0.07 2.21 7.24 -2.39 -0.02 2.19 16 44 H 0.13 2.16 8.14 -2.39 -0.02 2.14 16 45 H 0.14 2.01 8.14 -2.39 -0.02 1.99 16 Total: -1.00 -68.81 362.87 4.57 -64.24 By element: Atomic # 1 Polarization: 37.60 SS G_CDS: 0.33 Total: 37.93 kcal Atomic # 6 Polarization: -10.31 SS G_CDS: 5.47 Total: -4.84 kcal Atomic # 7 Polarization: -85.30 SS G_CDS: -1.34 Total: -86.64 kcal Atomic # 8 Polarization: -44.37 SS G_CDS: -1.76 Total: -46.13 kcal Atomic # 14 Polarization: 33.57 SS G_CDS: 1.88 Total: 35.45 kcal Total: -68.81 4.57 -64.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183603412.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.819 kcal (2) G-P(sol) polarization free energy of solvation -68.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds