Wall clock time and date at job start Tue Mar 31 2020 17:34:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46666 * 2 1 4 4 H 1.09001 * 109.47501 * 305.38140 * 3 2 1 5 5 C 1.50698 * 109.46913 * 185.38258 * 3 2 1 6 6 H 1.08000 * 119.99803 * 244.85075 * 5 3 2 7 7 C 1.37874 * 120.00096 * 64.85582 * 5 3 2 8 8 N 1.31513 * 120.00242 * 186.98009 * 7 5 3 9 9 Si 1.86798 * 119.99823 * 6.98241 * 7 5 3 10 10 H 1.48497 * 109.47001 * 269.99781 * 9 7 5 11 11 H 1.48495 * 109.47196 * 30.00334 * 9 7 5 12 12 H 1.48508 * 109.47115 * 150.00262 * 9 7 5 13 13 N 1.46507 * 109.47180 * 65.38132 * 3 2 1 14 14 C 1.34772 * 120.00243 * 274.99837 * 13 3 2 15 15 O 1.21591 * 119.99986 * 359.97438 * 14 13 3 16 16 C 1.47592 * 120.00308 * 179.97438 * 14 13 3 17 17 C 1.39752 * 120.07274 * 359.72660 * 16 14 13 18 18 C 1.37667 * 119.92647 * 179.76221 * 17 16 14 19 19 C 1.39130 * 120.07530 * 0.49144 * 18 17 16 20 20 N 1.39441 * 119.92882 * 179.74342 * 19 18 17 21 21 C 1.46084 * 118.72983 * 67.72387 * 20 19 18 22 22 C 1.53213 * 109.82442 * 161.46545 * 21 20 19 23 23 O 1.43245 * 108.51043 * 49.54045 * 22 21 20 24 24 C 1.42969 * 112.99006 * 291.45627 * 23 22 21 25 25 C 1.33872 * 118.72750 * 247.98802 * 20 19 18 26 26 O 1.21279 * 118.83208 * 1.88551 * 25 20 19 27 27 C 1.39139 * 120.14499 * 359.76255 * 19 18 17 28 28 C 1.37669 * 120.07188 * 0.02562 * 27 19 18 29 29 H 1.09000 * 109.47495 * 299.99868 * 1 2 3 30 30 H 1.08996 * 109.47818 * 60.00100 * 1 2 3 31 31 H 1.09008 * 109.47123 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.46992 * 240.00126 * 2 1 3 33 33 H 1.08999 * 109.47194 * 119.99493 * 2 1 3 34 34 H 0.97007 * 119.99491 * 354.96004 * 8 7 5 35 35 H 0.97005 * 119.99545 * 94.99804 * 13 3 2 36 36 H 1.08004 * 120.03638 * 359.97438 * 17 16 14 37 37 H 1.08001 * 119.96630 * 180.23096 * 18 17 16 38 38 H 1.09001 * 109.39533 * 281.77984 * 21 20 19 39 39 H 1.09000 * 109.39835 * 41.50504 * 21 20 19 40 40 H 1.08996 * 109.82870 * 289.74543 * 22 21 20 41 41 H 1.09005 * 109.67028 * 169.23485 * 22 21 20 42 42 H 1.08999 * 109.41335 * 289.49833 * 24 23 22 43 43 H 1.08994 * 109.41383 * 169.70217 * 24 23 22 44 44 H 1.07994 * 119.96389 * 179.97438 * 27 19 18 45 45 H 1.08007 * 120.03341 * 180.02562 * 28 27 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6000 1.9835 -0.8379 5 6 3.5410 1.4447 -0.1333 6 1 4.1542 1.8163 0.6743 7 6 4.1314 0.9724 -1.2862 8 7 5.4388 0.8455 -1.3511 9 14 3.0743 0.5128 -2.7561 10 1 2.6911 -0.9188 -2.6619 11 1 1.8501 1.3532 -2.7676 12 1 3.8414 0.7384 -4.0075 13 7 1.6601 2.0948 1.2557 14 6 0.4436 2.6613 1.3798 15 8 -0.3386 2.6316 0.4494 16 6 0.0608 3.3179 2.6450 17 6 0.9565 3.3480 3.7173 18 6 0.5982 3.9655 4.8944 19 6 -0.6579 4.5502 5.0207 20 7 -1.0197 5.1702 6.2162 21 6 -0.3308 6.3977 6.6071 22 6 -1.1576 7.1452 7.6583 23 8 -1.5264 6.2208 8.6885 24 6 -2.4629 5.2355 8.2456 25 6 -1.9811 4.6146 6.9639 26 8 -2.4809 3.5731 6.5945 27 6 -1.5541 4.5175 3.9568 28 6 -1.2004 3.9054 2.7755 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5137 0.8900 34 1 5.9929 1.1522 -0.6163 35 1 2.2844 2.1188 1.9978 36 1 1.9301 2.8903 3.6215 37 1 1.2913 3.9923 5.7222 38 1 0.6465 6.1484 7.0204 39 1 -0.2006 7.0342 5.7319 40 1 -2.0556 7.5572 7.1980 41 1 -0.5631 7.9522 8.0868 42 1 -3.4318 5.7060 8.0785 43 1 -2.5631 4.4626 9.0075 44 1 -2.5285 4.9719 4.0582 45 1 -1.8964 3.8807 1.9500 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001196278391.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:34:07 Heat of formation + Delta-G solvation = -76.078761 kcal Electronic energy + Delta-G solvation = -28252.825035 eV Core-core repulsion = 24235.809667 eV Total energy + Delta-G solvation = -4017.015367 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.51290 -39.82324 -38.48100 -37.94561 -35.78854 -35.22303 -32.60876 -31.84528 -31.07199 -30.92267 -30.05137 -27.81590 -27.00084 -24.66392 -23.59636 -22.73223 -22.25885 -20.87903 -19.86078 -19.47312 -18.33781 -18.13585 -17.99595 -16.89910 -16.67312 -15.94869 -15.84883 -15.53266 -15.31189 -14.92594 -14.66692 -14.35568 -13.97398 -13.88154 -13.65700 -13.50210 -13.28679 -12.92298 -12.76445 -12.48830 -12.34382 -12.30960 -12.19622 -11.91636 -11.72260 -11.40106 -11.05955 -10.93781 -10.70881 -10.47481 -9.97774 -9.83038 -9.73259 -9.61709 -9.31654 -9.14162 -8.90939 -8.70301 -8.54164 -8.10983 -6.57852 -4.25803 0.71705 1.25680 2.01717 2.25554 3.05506 3.14132 3.35496 3.44738 3.58610 3.80170 3.88292 4.01408 4.15753 4.37645 4.39685 4.56281 4.64760 4.72296 4.75367 4.84698 4.98861 5.06530 5.13946 5.18065 5.22945 5.27554 5.41580 5.82378 5.89485 6.02968 6.07179 6.09416 6.19027 6.22768 6.29118 6.33545 6.67850 6.71683 6.75304 6.82457 6.88781 7.01275 7.32471 7.33703 7.59346 7.60868 8.20038 8.41301 8.66467 8.91529 9.44658 10.82801 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.026442 B = 0.002455 C = 0.002352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.672085 B =11401.127822 C =11904.291781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.137 4.137 3 C 0.241 3.759 4 H 0.051 0.949 5 C -0.610 4.610 6 H 0.062 0.938 7 C 0.036 3.964 8 N -0.904 5.904 9 Si 1.048 2.952 10 H -0.280 1.280 11 H -0.273 1.273 12 H -0.287 1.287 13 N -0.693 5.693 14 C 0.542 3.458 15 O -0.544 6.544 16 C -0.118 4.118 17 C -0.077 4.077 18 C -0.124 4.124 19 C 0.144 3.856 20 N -0.563 5.563 21 C 0.078 3.922 22 C 0.044 3.956 23 O -0.369 6.369 24 C 0.053 3.947 25 C 0.486 3.514 26 O -0.520 6.520 27 C -0.112 4.112 28 C -0.053 4.053 29 H 0.050 0.950 30 H 0.053 0.947 31 H 0.032 0.968 32 H 0.060 0.940 33 H 0.054 0.946 34 H 0.268 0.732 35 H 0.392 0.608 36 H 0.134 0.866 37 H 0.128 0.872 38 H 0.082 0.918 39 H 0.092 0.908 40 H 0.067 0.933 41 H 0.120 0.880 42 H 0.094 0.906 43 H 0.134 0.866 44 H 0.125 0.875 45 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.220 13.474 19.587 27.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.176 4.176 3 C 0.137 3.863 4 H 0.068 0.932 5 C -0.648 4.648 6 H 0.080 0.920 7 C -0.170 4.170 8 N -0.538 5.538 9 Si 0.877 3.123 10 H -0.207 1.207 11 H -0.198 1.198 12 H -0.214 1.214 13 N -0.341 5.341 14 C 0.328 3.672 15 O -0.424 6.424 16 C -0.121 4.121 17 C -0.097 4.097 18 C -0.143 4.143 19 C 0.053 3.947 20 N -0.294 5.294 21 C -0.044 4.044 22 C -0.033 4.033 23 O -0.287 6.287 24 C -0.026 4.026 25 C 0.274 3.726 26 O -0.395 6.395 27 C -0.132 4.132 28 C -0.073 4.073 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.051 0.949 32 H 0.079 0.921 33 H 0.073 0.927 34 H 0.079 0.921 35 H 0.226 0.774 36 H 0.152 0.848 37 H 0.146 0.854 38 H 0.100 0.900 39 H 0.110 0.890 40 H 0.085 0.915 41 H 0.138 0.862 42 H 0.112 0.888 43 H 0.151 0.849 44 H 0.143 0.857 45 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -13.876 12.266 17.415 25.422 hybrid contribution 0.387 0.656 1.788 1.944 sum -13.490 12.922 19.203 26.790 Atomic orbital electron populations 1.21904 0.97097 0.99099 1.02204 1.22254 0.94086 0.99794 1.01426 1.19295 0.95974 0.88603 0.82396 0.93171 1.22152 0.89625 1.48297 1.04730 0.92012 1.25697 0.97484 0.93567 1.00206 1.70840 1.04384 1.42477 1.36059 0.83952 0.75345 0.77244 0.75782 1.20659 1.19810 1.21384 1.46213 1.14348 1.55397 1.18152 1.18122 0.82893 0.79292 0.86897 1.90745 1.51130 1.60164 1.40396 1.20364 0.95442 1.01223 0.95061 1.21266 0.99311 0.97134 0.91956 1.21051 0.96306 0.98601 0.98351 1.17675 0.94302 0.97102 0.85588 1.44975 1.38056 1.25843 1.20507 1.22349 0.97057 0.85314 0.99644 1.23091 0.99382 0.92043 0.88769 1.88215 1.62540 1.42390 1.35582 1.22860 0.93397 0.92499 0.93874 1.21196 0.79470 0.85371 0.86550 1.90821 1.55248 1.22201 1.71267 1.21071 0.99412 1.00638 0.92050 1.21156 0.95235 0.93771 0.97090 0.93115 0.92829 0.94883 0.92146 0.92683 0.92146 0.77428 0.84805 0.85370 0.90001 0.88967 0.91500 0.86208 0.88832 0.84853 0.85708 0.84105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.99 8.52 37.16 0.32 -2.67 16 2 C -0.14 -3.07 5.20 -26.73 -0.14 -3.21 16 3 C 0.24 5.74 1.81 -69.08 -0.13 5.62 16 4 H 0.05 1.31 6.07 -51.93 -0.32 1.00 16 5 C -0.61 -16.38 9.09 -34.44 -0.31 -16.69 16 6 H 0.06 1.72 7.95 -52.49 -0.42 1.30 16 7 C 0.04 1.02 5.42 -17.82 -0.10 0.92 16 8 N -0.90 -26.94 13.70 55.43 0.76 -26.19 16 9 Si 1.05 25.42 25.38 -169.99 -4.31 21.11 16 10 H -0.28 -6.44 6.74 56.52 0.38 -6.06 16 11 H -0.27 -6.40 6.37 56.52 0.36 -6.04 16 12 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 13 N -0.69 -14.05 4.97 -55.95 -0.28 -14.33 16 14 C 0.54 10.56 6.35 -12.45 -0.08 10.48 16 15 O -0.54 -12.10 13.48 5.29 0.07 -12.02 16 16 C -0.12 -1.85 5.88 -104.95 -0.62 -2.47 16 17 C -0.08 -1.03 9.53 -39.22 -0.37 -1.40 16 18 C -0.12 -1.45 9.80 -39.46 -0.39 -1.83 16 19 C 0.14 1.70 4.59 -83.73 -0.38 1.32 16 20 N -0.56 -5.39 2.87 -114.02 -0.33 -5.72 16 21 C 0.08 0.45 6.52 -4.16 -0.03 0.42 16 22 C 0.04 0.18 6.91 37.27 0.26 0.44 16 23 O -0.37 -2.44 10.85 -35.23 -0.38 -2.83 16 24 C 0.05 0.35 6.98 35.84 0.25 0.60 16 25 C 0.49 5.12 7.45 -11.56 -0.09 5.03 16 26 O -0.52 -7.70 16.46 5.56 0.09 -7.61 16 27 C -0.11 -1.41 9.31 -39.45 -0.37 -1.78 16 28 C -0.05 -0.76 9.58 -39.23 -0.38 -1.14 16 29 H 0.05 1.04 5.64 -51.93 -0.29 0.75 16 30 H 0.05 1.14 7.87 -51.93 -0.41 0.73 16 31 H 0.03 0.59 8.14 -51.92 -0.42 0.17 16 32 H 0.06 1.40 4.43 -51.93 -0.23 1.17 16 33 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.27 7.90 8.72 -40.82 -0.36 7.54 16 35 H 0.39 7.04 6.55 -40.82 -0.27 6.77 16 36 H 0.13 1.60 6.39 -52.48 -0.34 1.27 16 37 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 38 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.09 0.43 8.11 -51.93 -0.42 0.01 16 40 H 0.07 0.22 8.10 -51.93 -0.42 -0.21 16 41 H 0.12 0.22 8.14 -51.93 -0.42 -0.21 16 42 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.13 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 45 H 0.14 2.02 7.64 -52.48 -0.40 1.62 16 LS Contribution 363.28 15.07 5.47 5.47 Total: -1.00 -34.73 363.28 -7.56 -42.29 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: -6.10 Total: 6.17 kcal Atomic # 6 Polarization: -3.81 SS G_CDS: -2.55 Total: -6.35 kcal Atomic # 7 Polarization: -46.38 SS G_CDS: 0.15 Total: -46.23 kcal Atomic # 8 Polarization: -22.24 SS G_CDS: -0.22 Total: -22.46 kcal Atomic # 14 Polarization: 25.42 SS G_CDS: -4.31 Total: 21.11 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -34.73 -7.56 -42.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001196278391.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.789 kcal (2) G-P(sol) polarization free energy of solvation -34.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds