Wall clock time and date at job start Tue Mar 31 2020 17:34:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46666 * 2 1 4 4 H 1.09001 * 109.47501 * 305.38140 * 3 2 1 5 5 C 1.50698 * 109.46913 * 185.38258 * 3 2 1 6 6 H 1.08000 * 119.99803 * 244.85075 * 5 3 2 7 7 C 1.37874 * 120.00096 * 64.85582 * 5 3 2 8 8 N 1.31513 * 120.00242 * 186.98009 * 7 5 3 9 9 Si 1.86798 * 119.99823 * 6.98241 * 7 5 3 10 10 H 1.48497 * 109.47001 * 269.99781 * 9 7 5 11 11 H 1.48495 * 109.47196 * 30.00334 * 9 7 5 12 12 H 1.48508 * 109.47115 * 150.00262 * 9 7 5 13 13 N 1.46507 * 109.47180 * 65.38132 * 3 2 1 14 14 C 1.34772 * 120.00243 * 274.99837 * 13 3 2 15 15 O 1.21591 * 119.99986 * 359.97438 * 14 13 3 16 16 C 1.47592 * 120.00308 * 179.97438 * 14 13 3 17 17 C 1.39752 * 120.07274 * 359.72660 * 16 14 13 18 18 C 1.37667 * 119.92647 * 179.76221 * 17 16 14 19 19 C 1.39130 * 120.07530 * 0.49144 * 18 17 16 20 20 N 1.39441 * 119.92882 * 179.74342 * 19 18 17 21 21 C 1.46084 * 118.72983 * 67.72387 * 20 19 18 22 22 C 1.53213 * 109.82442 * 161.46545 * 21 20 19 23 23 O 1.43245 * 108.51043 * 49.54045 * 22 21 20 24 24 C 1.42969 * 112.99006 * 291.45627 * 23 22 21 25 25 C 1.33872 * 118.72750 * 247.98802 * 20 19 18 26 26 O 1.21279 * 118.83208 * 1.88551 * 25 20 19 27 27 C 1.39139 * 120.14499 * 359.76255 * 19 18 17 28 28 C 1.37669 * 120.07188 * 0.02562 * 27 19 18 29 29 H 1.09000 * 109.47495 * 299.99868 * 1 2 3 30 30 H 1.08996 * 109.47818 * 60.00100 * 1 2 3 31 31 H 1.09008 * 109.47123 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.46992 * 240.00126 * 2 1 3 33 33 H 1.08999 * 109.47194 * 119.99493 * 2 1 3 34 34 H 0.97007 * 119.99491 * 354.96004 * 8 7 5 35 35 H 0.97005 * 119.99545 * 94.99804 * 13 3 2 36 36 H 1.08004 * 120.03638 * 359.97438 * 17 16 14 37 37 H 1.08001 * 119.96630 * 180.23096 * 18 17 16 38 38 H 1.09001 * 109.39533 * 281.77984 * 21 20 19 39 39 H 1.09000 * 109.39835 * 41.50504 * 21 20 19 40 40 H 1.08996 * 109.82870 * 289.74543 * 22 21 20 41 41 H 1.09005 * 109.67028 * 169.23485 * 22 21 20 42 42 H 1.08999 * 109.41335 * 289.49833 * 24 23 22 43 43 H 1.08994 * 109.41383 * 169.70217 * 24 23 22 44 44 H 1.07994 * 119.96389 * 179.97438 * 27 19 18 45 45 H 1.08007 * 120.03341 * 180.02562 * 28 27 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6000 1.9835 -0.8379 5 6 3.5410 1.4447 -0.1333 6 1 4.1542 1.8163 0.6743 7 6 4.1314 0.9724 -1.2862 8 7 5.4388 0.8455 -1.3511 9 14 3.0743 0.5128 -2.7561 10 1 2.6911 -0.9188 -2.6619 11 1 1.8501 1.3532 -2.7676 12 1 3.8414 0.7384 -4.0075 13 7 1.6601 2.0948 1.2557 14 6 0.4436 2.6613 1.3798 15 8 -0.3386 2.6316 0.4494 16 6 0.0608 3.3179 2.6450 17 6 0.9565 3.3480 3.7173 18 6 0.5982 3.9655 4.8944 19 6 -0.6579 4.5502 5.0207 20 7 -1.0197 5.1702 6.2162 21 6 -0.3308 6.3977 6.6071 22 6 -1.1576 7.1452 7.6583 23 8 -1.5264 6.2208 8.6885 24 6 -2.4629 5.2355 8.2456 25 6 -1.9811 4.6146 6.9639 26 8 -2.4809 3.5731 6.5945 27 6 -1.5541 4.5175 3.9568 28 6 -1.2004 3.9054 2.7755 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5137 0.8900 34 1 5.9929 1.1522 -0.6163 35 1 2.2844 2.1188 1.9978 36 1 1.9301 2.8903 3.6215 37 1 1.2913 3.9923 5.7222 38 1 0.6465 6.1484 7.0204 39 1 -0.2006 7.0342 5.7319 40 1 -2.0556 7.5572 7.1980 41 1 -0.5631 7.9522 8.0868 42 1 -3.4318 5.7060 8.0785 43 1 -2.5631 4.4626 9.0075 44 1 -2.5285 4.9719 4.0582 45 1 -1.8964 3.8807 1.9500 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001196278391.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:34:06 Heat of formation + Delta-G solvation = -100.848994 kcal Electronic energy + Delta-G solvation = -28253.899153 eV Core-core repulsion = 24235.809667 eV Total energy + Delta-G solvation = -4018.089485 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.28449 -41.17429 -39.50277 -38.75395 -37.17372 -36.45949 -34.54669 -33.48572 -32.11167 -31.77329 -30.89844 -29.23109 -28.16178 -25.36416 -24.74238 -24.11548 -23.65636 -22.33662 -21.37734 -20.42502 -20.05267 -18.98115 -18.71973 -18.40214 -17.60513 -17.19117 -16.59832 -16.43377 -16.22114 -16.10729 -15.98760 -15.51402 -15.30024 -14.90932 -14.67675 -14.56095 -14.55585 -14.41693 -14.19613 -14.00931 -13.81315 -13.61580 -13.42697 -12.81256 -12.76039 -12.51749 -12.42070 -12.37984 -12.31642 -11.73096 -11.61833 -11.53277 -11.02616 -10.88449 -10.68236 -10.64866 -10.47276 -10.16743 -9.92537 -9.62906 -8.80202 -6.48709 -0.39376 0.23284 1.24059 1.40521 1.49869 1.55741 1.67603 1.80041 2.34972 2.39166 2.71341 2.74989 3.01445 3.25755 3.67667 3.70361 3.74810 3.81946 4.06311 4.14374 4.16312 4.23119 4.25589 4.28981 4.34309 4.41865 4.47802 4.48871 4.74762 4.77322 4.80141 4.84520 4.94318 5.03076 5.12797 5.15197 5.21180 5.26463 5.29284 5.50140 5.57415 5.61805 5.66224 5.82911 5.98110 6.10902 6.49152 6.75923 6.82026 7.23870 7.35134 8.59666 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.026442 B = 0.002455 C = 0.002352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.672085 B =11401.127822 C =11904.291781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.135 4.135 3 C 0.246 3.754 4 H 0.028 0.972 5 C -0.604 4.604 6 H 0.043 0.957 7 C -0.008 4.008 8 N -0.934 5.934 9 Si 1.078 2.922 10 H -0.257 1.257 11 H -0.265 1.265 12 H -0.286 1.286 13 N -0.695 5.695 14 C 0.544 3.456 15 O -0.576 6.576 16 C -0.142 4.142 17 C -0.073 4.073 18 C -0.120 4.120 19 C 0.151 3.849 20 N -0.562 5.562 21 C 0.071 3.929 22 C 0.044 3.956 23 O -0.379 6.379 24 C 0.062 3.938 25 C 0.481 3.519 26 O -0.572 6.572 27 C -0.115 4.115 28 C -0.057 4.057 29 H 0.045 0.955 30 H 0.042 0.958 31 H 0.059 0.941 32 H 0.054 0.946 33 H 0.060 0.940 34 H 0.258 0.742 35 H 0.402 0.598 36 H 0.144 0.856 37 H 0.154 0.846 38 H 0.090 0.910 39 H 0.105 0.895 40 H 0.079 0.921 41 H 0.148 0.852 42 H 0.117 0.883 43 H 0.142 0.858 44 H 0.137 0.863 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.440 14.619 21.700 29.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.174 4.174 3 C 0.141 3.859 4 H 0.046 0.954 5 C -0.642 4.642 6 H 0.061 0.939 7 C -0.208 4.208 8 N -0.569 5.569 9 Si 0.901 3.099 10 H -0.183 1.183 11 H -0.191 1.191 12 H -0.212 1.212 13 N -0.344 5.344 14 C 0.332 3.668 15 O -0.458 6.458 16 C -0.145 4.145 17 C -0.092 4.092 18 C -0.140 4.140 19 C 0.060 3.940 20 N -0.292 5.292 21 C -0.050 4.050 22 C -0.032 4.032 23 O -0.297 6.297 24 C -0.018 4.018 25 C 0.271 3.729 26 O -0.451 6.451 27 C -0.134 4.134 28 C -0.077 4.077 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.078 0.922 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.068 0.932 35 H 0.238 0.762 36 H 0.162 0.838 37 H 0.172 0.828 38 H 0.109 0.891 39 H 0.123 0.877 40 H 0.097 0.903 41 H 0.165 0.835 42 H 0.135 0.865 43 H 0.160 0.840 44 H 0.155 0.845 45 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -15.080 13.454 19.580 28.139 hybrid contribution 0.770 0.444 1.280 1.558 sum -14.310 13.897 20.860 28.863 Atomic orbital electron populations 1.21785 0.95465 1.00597 1.01452 1.22168 0.95478 0.98330 1.01393 1.18975 0.93743 0.89774 0.83399 0.95448 1.22333 0.91294 1.46779 1.03838 0.93905 1.26804 0.97689 0.93608 1.02689 1.70936 1.05291 1.44667 1.36044 0.83573 0.74422 0.78530 0.73386 1.18269 1.19051 1.21232 1.46026 1.15240 1.55776 1.17358 1.18597 0.81918 0.78423 0.87835 1.90715 1.51875 1.61323 1.41927 1.20075 0.96867 1.03390 0.94166 1.21376 0.99210 0.96902 0.91737 1.21284 0.96718 0.97607 0.98342 1.17885 0.93984 0.95912 0.86260 1.45220 1.37946 1.26675 1.19389 1.22675 0.97439 0.84012 1.00846 1.23321 1.00117 0.91804 0.87998 1.88217 1.62569 1.42531 1.36409 1.22887 0.94129 0.92883 0.91861 1.21984 0.78723 0.84738 0.87406 1.90800 1.57041 1.24529 1.72694 1.21185 1.00155 1.00419 0.91643 1.21147 0.94716 0.94068 0.97740 0.93570 0.93908 0.92175 0.92725 0.92128 0.93239 0.76230 0.83817 0.82819 0.89136 0.87676 0.90286 0.83487 0.86499 0.84049 0.84484 0.84777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.42 8.52 71.98 0.61 -4.81 16 2 C -0.14 -5.95 5.20 30.59 0.16 -5.79 16 3 C 0.25 11.79 1.81 44.24 0.08 11.87 16 4 H 0.03 1.46 6.07 -2.39 -0.01 1.45 16 5 C -0.60 -32.93 9.09 25.60 0.23 -32.70 16 6 H 0.04 2.44 7.95 -2.91 -0.02 2.42 16 7 C -0.01 -0.45 5.42 84.65 0.46 0.01 16 8 N -0.93 -56.64 13.70 21.45 0.29 -56.35 16 9 Si 1.08 51.17 25.38 68.60 1.74 52.91 16 10 H -0.26 -11.25 6.74 99.48 0.67 -10.58 16 11 H -0.27 -12.22 6.37 99.48 0.63 -11.58 16 12 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 13 N -0.70 -28.34 4.97 -449.20 -2.23 -30.57 16 14 C 0.54 21.39 6.35 86.71 0.55 21.94 16 15 O -0.58 -26.04 13.48 -4.00 -0.05 -26.09 16 16 C -0.14 -4.44 5.88 -20.08 -0.12 -4.56 16 17 C -0.07 -1.85 9.53 22.50 0.21 -1.64 16 18 C -0.12 -2.56 9.80 22.35 0.22 -2.34 16 19 C 0.15 3.29 4.59 38.36 0.18 3.47 16 20 N -0.56 -9.39 2.87 -633.54 -1.82 -11.21 16 21 C 0.07 0.58 6.52 86.53 0.56 1.14 16 22 C 0.04 0.20 6.91 72.05 0.50 0.69 16 23 O -0.38 -3.75 10.85 -148.98 -1.62 -5.36 16 24 C 0.06 0.65 6.98 71.13 0.50 1.15 16 25 C 0.48 9.20 7.45 87.69 0.65 9.86 16 26 O -0.57 -16.44 16.46 -3.03 -0.05 -16.48 16 27 C -0.11 -2.77 9.31 22.35 0.21 -2.56 16 28 C -0.06 -1.64 9.58 22.50 0.22 -1.42 16 29 H 0.05 1.87 5.64 -2.39 -0.01 1.86 16 30 H 0.04 1.78 7.87 -2.39 -0.02 1.76 16 31 H 0.06 2.05 8.14 -2.38 -0.02 2.03 16 32 H 0.05 2.46 4.43 -2.39 -0.01 2.45 16 33 H 0.06 2.57 8.14 -2.39 -0.02 2.55 16 34 H 0.26 15.64 8.72 -92.70 -0.81 14.83 16 35 H 0.40 14.47 6.55 -92.70 -0.61 13.86 16 36 H 0.14 3.27 6.39 -2.91 -0.02 3.26 16 37 H 0.15 2.47 8.06 -2.91 -0.02 2.45 16 38 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 39 H 0.11 0.62 8.11 -2.39 -0.02 0.60 16 40 H 0.08 0.20 8.10 -2.39 -0.02 0.18 16 41 H 0.15 -0.12 8.14 -2.38 -0.02 -0.14 16 42 H 0.12 0.73 8.14 -2.39 -0.02 0.71 16 43 H 0.14 1.28 8.14 -2.39 -0.02 1.26 16 44 H 0.14 2.91 8.06 -2.91 -0.02 2.89 16 45 H 0.13 3.94 7.64 -2.91 -0.02 3.92 16 Total: -1.00 -76.57 363.28 1.75 -74.82 By element: Atomic # 1 Polarization: 23.76 SS G_CDS: 0.27 Total: 24.03 kcal Atomic # 6 Polarization: -10.92 SS G_CDS: 5.22 Total: -5.69 kcal Atomic # 7 Polarization: -94.37 SS G_CDS: -3.76 Total: -98.13 kcal Atomic # 8 Polarization: -46.22 SS G_CDS: -1.72 Total: -47.94 kcal Atomic # 14 Polarization: 51.17 SS G_CDS: 1.74 Total: 52.91 kcal Total: -76.57 1.75 -74.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001196278391.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.029 kcal (2) G-P(sol) polarization free energy of solvation -76.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds