Wall clock time and date at job start Tue Mar 31 2020 17:27:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50695 * 120.00415 * 2 1 4 4 H 1.08991 * 109.87183 * 358.99134 * 3 2 1 5 5 O 1.43747 * 109.87984 * 237.82767 * 3 2 1 6 6 C 1.44372 * 106.97651 * 267.09243 * 5 3 2 7 7 C 1.54997 * 103.49148 * 319.93404 * 6 5 3 8 8 C 1.54101 * 109.87891 * 120.00043 * 3 2 1 9 9 H 1.09006 * 110.49054 * 358.58232 * 8 3 2 10 10 C 1.53007 * 110.48550 * 236.06844 * 8 3 2 11 11 N 1.46497 * 109.47020 * 174.99658 * 10 8 3 12 12 C 1.34775 * 120.00264 * 180.02562 * 11 10 8 13 13 O 1.21593 * 119.99532 * 359.97438 * 12 11 10 14 14 N 1.34771 * 120.00375 * 180.02562 * 12 11 10 15 15 C 1.40024 * 120.00234 * 185.26281 * 14 12 11 16 16 C 1.38904 * 120.00678 * 213.37041 * 15 14 12 17 17 C 1.38009 * 120.00060 * 179.74262 * 16 15 14 18 18 C 1.38897 * 120.00200 * 0.53712 * 17 16 15 19 19 O 1.35783 * 120.00014 * 179.69868 * 18 17 16 20 20 C 1.34823 * 117.00117 * 185.93030 * 19 18 17 21 21 H 1.07998 * 119.99676 * 5.39843 * 20 19 18 22 22 C 1.38625 * 120.00237 * 185.40285 * 20 19 18 23 23 N 1.31581 * 119.99879 * 359.97438 * 22 20 19 24 24 Si 1.86794 * 120.00201 * 180.02562 * 22 20 19 25 25 H 1.48506 * 109.47202 * 359.97438 * 24 22 20 26 26 H 1.48503 * 109.47151 * 119.99671 * 24 22 20 27 27 H 1.48496 * 109.47195 * 239.99919 * 24 22 20 28 28 C 1.38900 * 120.00205 * 359.72060 * 18 17 16 29 29 C 1.38013 * 119.99908 * 0.02562 * 28 18 17 30 30 H 1.07997 * 119.99298 * 0.02562 * 1 2 3 31 31 H 1.07993 * 120.00334 * 180.02562 * 1 2 3 32 32 H 1.08003 * 119.99525 * 179.97438 * 2 1 3 33 33 H 1.08996 * 110.62234 * 78.43843 * 6 5 3 34 34 H 1.09006 * 110.61742 * 201.27995 * 6 5 3 35 35 H 1.08994 * 110.90674 * 278.82984 * 7 6 5 36 36 H 1.09000 * 110.90734 * 155.21924 * 7 6 5 37 37 H 1.09001 * 109.46577 * 55.00535 * 10 8 3 38 38 H 1.09000 * 109.47127 * 294.99894 * 10 8 3 39 39 H 0.97002 * 120.00303 * 0.02562 * 11 10 8 40 40 H 0.96996 * 120.00056 * 5.26591 * 14 12 11 41 41 H 1.08000 * 120.00127 * 359.97438 * 16 15 14 42 42 H 1.08006 * 119.99771 * 180.23441 * 17 16 15 43 43 H 0.96996 * 119.99920 * 180.02562 * 23 22 20 44 44 H 1.07998 * 120.00311 * 179.97438 * 28 18 17 45 45 H 1.08001 * 119.99742 * 179.97438 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 1 1.3613 2.1383 -0.0180 5 8 2.9314 1.3684 -1.1442 6 6 4.2186 0.8666 -0.7253 7 6 4.3946 1.4630 0.6944 8 6 2.9531 1.3964 1.2550 9 1 2.8247 0.5119 1.8790 10 6 2.6288 2.6628 2.0501 11 7 3.3994 2.6679 3.2961 12 6 3.2740 3.6931 4.1618 13 8 2.5217 4.6141 3.9085 14 7 3.9833 3.6980 5.3078 15 6 3.7724 4.7052 6.2575 16 6 4.8310 5.1624 7.0319 17 6 4.6241 6.1588 7.9641 18 6 3.3550 6.6966 8.1358 19 8 3.1502 7.6726 9.0574 20 6 1.8764 8.0647 9.2609 21 1 1.0669 7.5475 8.7675 22 6 1.6059 9.1318 10.1034 23 7 2.5922 9.7617 10.7048 24 14 -0.1590 9.6746 10.3860 25 1 -1.0749 8.8093 9.6001 26 1 -0.4868 9.5606 11.8299 27 1 -0.3183 11.0858 9.9521 28 6 2.2953 6.2357 7.3652 29 6 2.5032 5.2430 6.4293 30 1 -0.5399 0.9353 -0.0004 31 1 -0.5400 -0.9352 0.0004 32 1 1.8500 -0.9354 0.0004 33 1 4.2118 -0.2226 -0.6860 34 1 5.0043 1.2205 -1.3930 35 1 4.7446 2.4939 0.6426 36 1 5.0726 0.8529 1.2913 37 1 1.5638 2.6836 2.2816 38 1 2.8893 3.5402 1.4582 39 1 3.9999 1.9333 3.4980 40 1 4.6400 3.0040 5.4747 41 1 5.8168 4.7409 6.9019 42 1 5.4480 6.5170 8.5636 43 1 2.4029 10.5082 11.2945 44 1 1.3084 6.6535 7.4990 45 1 1.6791 4.8843 5.8304 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001214343083.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:27:53 Heat of formation + Delta-G solvation = -48.518338 kcal Electronic energy + Delta-G solvation = -27043.249352 eV Core-core repulsion = 23027.429094 eV Total energy + Delta-G solvation = -4015.820258 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.61467 -39.99467 -38.71881 -36.73404 -35.29293 -34.18735 -33.93894 -32.33558 -32.00190 -30.16742 -29.49228 -27.85433 -25.75339 -25.08974 -23.29069 -22.41789 -21.67772 -21.18723 -20.52800 -20.18331 -18.52589 -17.88867 -17.46361 -16.87857 -16.78496 -16.36865 -15.67842 -15.49439 -14.96562 -14.51548 -14.42606 -14.42292 -14.18073 -13.80110 -13.58651 -13.52749 -13.45343 -12.97680 -12.82548 -12.51262 -12.20249 -12.01235 -11.79728 -11.72572 -11.56912 -11.49453 -11.41489 -11.25693 -10.99939 -10.73407 -10.39569 -10.19453 -10.00743 -9.88586 -9.60045 -9.25695 -9.19035 -8.65659 -8.17016 -6.87202 -6.41301 -3.98668 1.73439 2.17520 2.26678 2.67001 3.14534 3.17708 3.23220 3.34407 3.58953 3.95038 4.00792 4.07060 4.16604 4.39043 4.59494 4.61978 4.67071 4.74684 4.87676 4.90303 5.14088 5.21320 5.24929 5.28179 5.30146 5.44949 5.48850 5.52574 5.69068 5.70698 5.76413 6.10706 6.16531 6.19695 6.24019 6.27094 6.35387 6.42199 6.68574 6.76812 6.98540 7.14012 7.21535 7.35736 7.47622 7.82104 8.03044 8.05151 8.67674 9.04828 9.74884 10.76896 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.021647 B = 0.001931 C = 0.001814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.176714 B =14494.094632 C =15427.888243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.178 4.178 3 C 0.112 3.888 4 H 0.102 0.898 5 O -0.364 6.364 6 C 0.044 3.956 7 C -0.152 4.152 8 C -0.127 4.127 9 H 0.093 0.907 10 C 0.150 3.850 11 N -0.748 5.748 12 C 0.698 3.302 13 O -0.573 6.573 14 N -0.675 5.675 15 C 0.056 3.944 16 C -0.096 4.096 17 C -0.177 4.177 18 C 0.144 3.856 19 O -0.178 6.178 20 C -0.388 4.388 21 H 0.092 0.908 22 C 0.038 3.962 23 N -0.863 5.863 24 Si 0.940 3.060 25 H -0.267 1.267 26 H -0.276 1.276 27 H -0.276 1.276 28 C -0.217 4.217 29 C -0.065 4.065 30 H 0.101 0.899 31 H 0.101 0.899 32 H 0.110 0.890 33 H 0.060 0.940 34 H 0.094 0.906 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.069 0.931 38 H 0.071 0.929 39 H 0.394 0.606 40 H 0.397 0.603 41 H 0.114 0.886 42 H 0.121 0.879 43 H 0.269 0.731 44 H 0.130 0.870 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.719 -21.752 -19.295 29.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.197 4.197 3 C 0.054 3.946 4 H 0.120 0.880 5 O -0.283 6.283 6 C -0.032 4.032 7 C -0.190 4.190 8 C -0.146 4.146 9 H 0.112 0.888 10 C 0.025 3.975 11 N -0.405 5.405 12 C 0.399 3.601 13 O -0.449 6.449 14 N -0.322 5.322 15 C -0.037 4.037 16 C -0.117 4.117 17 C -0.197 4.197 18 C 0.090 3.910 19 O -0.082 6.082 20 C -0.465 4.465 21 H 0.110 0.890 22 C -0.166 4.166 23 N -0.499 5.499 24 Si 0.765 3.235 25 H -0.191 1.191 26 H -0.202 1.202 27 H -0.202 1.202 28 C -0.237 4.237 29 C -0.085 4.085 30 H 0.119 0.881 31 H 0.120 0.880 32 H 0.128 0.872 33 H 0.078 0.922 34 H 0.112 0.888 35 H 0.103 0.897 36 H 0.101 0.899 37 H 0.088 0.912 38 H 0.090 0.910 39 H 0.227 0.773 40 H 0.231 0.769 41 H 0.132 0.868 42 H 0.139 0.861 43 H 0.079 0.921 44 H 0.148 0.852 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 2.106 -20.503 -19.458 28.345 hybrid contribution -0.211 -0.635 0.459 0.811 sum 1.894 -21.138 -18.999 28.484 Atomic orbital electron populations 1.23933 0.95783 1.02406 0.98436 1.23274 0.96400 0.98443 1.01563 1.21803 0.92140 0.95990 0.84698 0.87980 1.88983 1.21590 1.84809 1.32882 1.23575 0.86261 0.98234 0.95143 1.23281 0.96050 1.03069 0.96555 1.22823 0.95381 0.99268 0.97085 0.88830 1.21188 0.96031 0.96620 0.83654 1.45033 1.49472 1.24220 1.21752 1.15939 0.81679 0.82638 0.79879 1.90967 1.41480 1.36027 1.76464 1.42310 1.42802 1.29741 1.17379 1.17014 0.94138 0.96781 0.95767 1.20302 0.96341 0.97444 0.97578 1.19968 0.95671 1.00636 1.03395 1.19404 0.93225 0.89494 0.88858 1.83992 1.29984 1.45595 1.48604 1.21366 0.81032 1.15434 1.28642 0.89045 1.25283 0.99926 0.95348 0.96064 1.70058 1.31357 1.20649 1.27814 0.85651 0.80471 0.78870 0.78482 1.19070 1.20192 1.20167 1.21094 1.00247 1.02058 1.00284 1.20730 0.95119 0.96336 0.96301 0.88105 0.88028 0.87172 0.92172 0.88755 0.89733 0.89936 0.91235 0.91033 0.77292 0.76929 0.86812 0.86066 0.92135 0.85225 0.86148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.04 14.32 29.01 0.42 -0.62 16 2 C -0.18 -1.17 8.87 -36.03 -0.32 -1.49 16 3 C 0.11 0.81 3.51 -27.31 -0.10 0.72 16 4 H 0.10 0.77 7.36 -51.93 -0.38 0.38 16 5 O -0.36 -3.21 11.18 -35.23 -0.39 -3.60 16 6 C 0.04 0.26 7.66 38.21 0.29 0.55 16 7 C -0.15 -0.80 6.56 -24.72 -0.16 -0.96 16 8 C -0.13 -0.77 2.69 -89.09 -0.24 -1.01 16 9 H 0.09 0.48 7.69 -51.93 -0.40 0.09 16 10 C 0.15 1.31 4.79 -4.04 -0.02 1.30 16 11 N -0.75 -7.01 5.45 -65.22 -0.36 -7.37 16 12 C 0.70 10.05 8.30 -86.92 -0.72 9.33 16 13 O -0.57 -11.01 14.05 5.28 0.07 -10.93 16 14 N -0.67 -9.18 5.35 -14.18 -0.08 -9.25 16 15 C 0.06 1.00 6.28 -83.62 -0.52 0.48 16 16 C -0.10 -1.68 9.96 -39.42 -0.39 -2.08 16 17 C -0.18 -3.70 9.98 -39.42 -0.39 -4.10 16 18 C 0.14 3.54 6.65 -39.09 -0.26 3.28 16 19 O -0.18 -5.14 9.76 -0.03 0.00 -5.14 16 20 C -0.39 -11.02 9.44 30.88 0.29 -10.73 16 21 H 0.09 2.43 5.29 -52.49 -0.28 2.15 16 22 C 0.04 1.05 5.49 -17.52 -0.10 0.96 16 23 N -0.86 -25.56 13.67 55.48 0.76 -24.80 16 24 Si 0.94 20.92 29.55 -169.99 -5.02 15.90 16 25 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 26 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 27 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 28 C -0.22 -4.98 9.13 -39.42 -0.36 -5.34 16 29 C -0.06 -1.33 8.65 -39.41 -0.34 -1.67 16 30 H 0.10 0.59 7.85 -52.49 -0.41 0.18 16 31 H 0.10 0.50 8.06 -52.49 -0.42 0.08 16 32 H 0.11 0.63 8.06 -52.48 -0.42 0.21 16 33 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.08 0.54 7.77 -51.93 -0.40 0.13 16 36 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.07 0.73 7.99 -51.93 -0.41 0.32 16 39 H 0.39 2.40 8.46 -40.82 -0.35 2.05 16 40 H 0.40 3.75 8.83 -40.82 -0.36 3.39 16 41 H 0.11 1.57 8.06 -52.49 -0.42 1.14 16 42 H 0.12 2.40 8.06 -52.48 -0.42 1.98 16 43 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 44 H 0.13 3.01 5.71 -52.49 -0.30 2.71 16 45 H 0.12 2.47 6.43 -52.49 -0.34 2.13 16 LS Contribution 379.08 15.07 5.71 5.71 Total: -1.00 -35.11 379.08 -8.38 -43.49 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: -6.15 Total: 7.39 kcal Atomic # 6 Polarization: -8.47 SS G_CDS: -2.93 Total: -11.39 kcal Atomic # 7 Polarization: -41.75 SS G_CDS: 0.33 Total: -41.42 kcal Atomic # 8 Polarization: -19.35 SS G_CDS: -0.32 Total: -19.67 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -35.11 -8.38 -43.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001214343083.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.028 kcal (2) G-P(sol) polarization free energy of solvation -35.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds