Wall clock time and date at job start Tue Mar 31 2020 17:27:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50695 * 120.00415 * 2 1 4 4 H 1.08991 * 109.87183 * 358.99134 * 3 2 1 5 5 O 1.43747 * 109.87984 * 237.82767 * 3 2 1 6 6 C 1.44372 * 106.97651 * 267.09243 * 5 3 2 7 7 C 1.54997 * 103.49148 * 319.93404 * 6 5 3 8 8 C 1.54101 * 109.87891 * 120.00043 * 3 2 1 9 9 H 1.09006 * 110.49054 * 358.58232 * 8 3 2 10 10 C 1.53007 * 110.48550 * 236.06844 * 8 3 2 11 11 N 1.46497 * 109.47020 * 174.99658 * 10 8 3 12 12 C 1.34775 * 120.00264 * 180.02562 * 11 10 8 13 13 O 1.21593 * 119.99532 * 359.97438 * 12 11 10 14 14 N 1.34771 * 120.00375 * 180.02562 * 12 11 10 15 15 C 1.40024 * 120.00234 * 185.26281 * 14 12 11 16 16 C 1.38904 * 120.00678 * 213.37041 * 15 14 12 17 17 C 1.38009 * 120.00060 * 179.74262 * 16 15 14 18 18 C 1.38897 * 120.00200 * 0.53712 * 17 16 15 19 19 O 1.35783 * 120.00014 * 179.69868 * 18 17 16 20 20 C 1.34823 * 117.00117 * 185.93030 * 19 18 17 21 21 H 1.07998 * 119.99676 * 5.39843 * 20 19 18 22 22 C 1.38625 * 120.00237 * 185.40285 * 20 19 18 23 23 N 1.31581 * 119.99879 * 359.97438 * 22 20 19 24 24 Si 1.86794 * 120.00201 * 180.02562 * 22 20 19 25 25 H 1.48506 * 109.47202 * 359.97438 * 24 22 20 26 26 H 1.48503 * 109.47151 * 119.99671 * 24 22 20 27 27 H 1.48496 * 109.47195 * 239.99919 * 24 22 20 28 28 C 1.38900 * 120.00205 * 359.72060 * 18 17 16 29 29 C 1.38013 * 119.99908 * 0.02562 * 28 18 17 30 30 H 1.07997 * 119.99298 * 0.02562 * 1 2 3 31 31 H 1.07993 * 120.00334 * 180.02562 * 1 2 3 32 32 H 1.08003 * 119.99525 * 179.97438 * 2 1 3 33 33 H 1.08996 * 110.62234 * 78.43843 * 6 5 3 34 34 H 1.09006 * 110.61742 * 201.27995 * 6 5 3 35 35 H 1.08994 * 110.90674 * 278.82984 * 7 6 5 36 36 H 1.09000 * 110.90734 * 155.21924 * 7 6 5 37 37 H 1.09001 * 109.46577 * 55.00535 * 10 8 3 38 38 H 1.09000 * 109.47127 * 294.99894 * 10 8 3 39 39 H 0.97002 * 120.00303 * 0.02562 * 11 10 8 40 40 H 0.96996 * 120.00056 * 5.26591 * 14 12 11 41 41 H 1.08000 * 120.00127 * 359.97438 * 16 15 14 42 42 H 1.08006 * 119.99771 * 180.23441 * 17 16 15 43 43 H 0.96996 * 119.99920 * 180.02562 * 23 22 20 44 44 H 1.07998 * 120.00311 * 179.97438 * 28 18 17 45 45 H 1.08001 * 119.99742 * 179.97438 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 1 1.3613 2.1383 -0.0180 5 8 2.9314 1.3684 -1.1442 6 6 4.2186 0.8666 -0.7253 7 6 4.3946 1.4630 0.6944 8 6 2.9531 1.3964 1.2550 9 1 2.8247 0.5119 1.8790 10 6 2.6288 2.6628 2.0501 11 7 3.3994 2.6679 3.2961 12 6 3.2740 3.6931 4.1618 13 8 2.5217 4.6141 3.9085 14 7 3.9833 3.6980 5.3078 15 6 3.7724 4.7052 6.2575 16 6 4.8310 5.1624 7.0319 17 6 4.6241 6.1588 7.9641 18 6 3.3550 6.6966 8.1358 19 8 3.1502 7.6726 9.0574 20 6 1.8764 8.0647 9.2609 21 1 1.0669 7.5475 8.7675 22 6 1.6059 9.1318 10.1034 23 7 2.5922 9.7617 10.7048 24 14 -0.1590 9.6746 10.3860 25 1 -1.0749 8.8093 9.6001 26 1 -0.4868 9.5606 11.8299 27 1 -0.3183 11.0858 9.9521 28 6 2.2953 6.2357 7.3652 29 6 2.5032 5.2430 6.4293 30 1 -0.5399 0.9353 -0.0004 31 1 -0.5400 -0.9352 0.0004 32 1 1.8500 -0.9354 0.0004 33 1 4.2118 -0.2226 -0.6860 34 1 5.0043 1.2205 -1.3930 35 1 4.7446 2.4939 0.6426 36 1 5.0726 0.8529 1.2913 37 1 1.5638 2.6836 2.2816 38 1 2.8893 3.5402 1.4582 39 1 3.9999 1.9333 3.4980 40 1 4.6400 3.0040 5.4747 41 1 5.8168 4.7409 6.9019 42 1 5.4480 6.5170 8.5636 43 1 2.4029 10.5082 11.2945 44 1 1.3084 6.6535 7.4990 45 1 1.6791 4.8843 5.8304 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001214343083.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:27:52 Heat of formation + Delta-G solvation = -73.795839 kcal Electronic energy + Delta-G solvation = -27044.345466 eV Core-core repulsion = 23027.429094 eV Total energy + Delta-G solvation = -4016.916372 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.68270 -40.85683 -40.33508 -38.33009 -36.27204 -35.40134 -34.68027 -34.16236 -32.90395 -31.83563 -30.17025 -29.25785 -27.32262 -26.34624 -23.99527 -23.75438 -23.18536 -21.91175 -21.62826 -20.81177 -20.05265 -19.41570 -18.94269 -18.16033 -17.39412 -17.30367 -16.77652 -16.27964 -16.25839 -16.04340 -15.84675 -15.52371 -15.28871 -15.21290 -14.90833 -14.65002 -14.55873 -14.16373 -13.93659 -13.66860 -13.53316 -13.23944 -13.19537 -12.72720 -12.68985 -12.50810 -12.45344 -12.25957 -12.11036 -12.00624 -11.72929 -11.48235 -11.30055 -11.01987 -10.66533 -10.55519 -10.38084 -10.12721 -9.81889 -8.54330 -8.46350 -6.12414 0.54589 0.60349 1.25058 1.35179 1.42390 1.53104 1.60653 2.09880 2.18446 2.84724 3.10406 3.17581 3.18511 3.50354 3.53656 3.55043 3.80136 4.10254 4.11864 4.14166 4.19851 4.28198 4.33429 4.42009 4.50592 4.64014 4.66916 4.75345 4.75890 4.84381 4.89328 4.97310 5.06745 5.08177 5.14573 5.19042 5.35455 5.40350 5.43084 5.62855 5.63944 5.72466 5.77268 5.93376 6.00928 6.04404 6.21025 6.98812 7.05914 7.54356 7.79029 8.76898 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.021647 B = 0.001931 C = 0.001814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.176714 B =14494.094632 C =15427.888243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.184 4.184 3 C 0.108 3.892 4 H 0.090 0.910 5 O -0.392 6.392 6 C 0.039 3.961 7 C -0.147 4.147 8 C -0.113 4.113 9 H 0.113 0.887 10 C 0.151 3.849 11 N -0.721 5.721 12 C 0.695 3.305 13 O -0.623 6.623 14 N -0.661 5.661 15 C 0.085 3.915 16 C -0.079 4.079 17 C -0.177 4.177 18 C 0.103 3.897 19 O -0.228 6.228 20 C -0.410 4.410 21 H 0.096 0.904 22 C -0.022 4.022 23 N -0.918 5.918 24 Si 1.016 2.984 25 H -0.256 1.256 26 H -0.265 1.265 27 H -0.268 1.268 28 C -0.226 4.226 29 C -0.077 4.077 30 H 0.097 0.903 31 H 0.114 0.886 32 H 0.123 0.877 33 H 0.075 0.925 34 H 0.100 0.900 35 H 0.072 0.928 36 H 0.109 0.891 37 H 0.058 0.942 38 H 0.054 0.946 39 H 0.416 0.584 40 H 0.424 0.576 41 H 0.168 0.832 42 H 0.130 0.870 43 H 0.273 0.727 44 H 0.115 0.885 45 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.753 -25.026 -20.755 32.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.202 4.202 3 C 0.049 3.951 4 H 0.108 0.892 5 O -0.311 6.311 6 C -0.037 4.037 7 C -0.184 4.184 8 C -0.132 4.132 9 H 0.131 0.869 10 C 0.026 3.974 11 N -0.378 5.378 12 C 0.396 3.604 13 O -0.503 6.503 14 N -0.311 5.311 15 C -0.010 4.010 16 C -0.099 4.099 17 C -0.197 4.197 18 C 0.053 3.947 19 O -0.135 6.135 20 C -0.487 4.487 21 H 0.113 0.887 22 C -0.220 4.220 23 N -0.557 5.557 24 Si 0.836 3.164 25 H -0.180 1.180 26 H -0.190 1.190 27 H -0.194 1.194 28 C -0.246 4.246 29 C -0.098 4.098 30 H 0.115 0.885 31 H 0.132 0.868 32 H 0.141 0.859 33 H 0.093 0.907 34 H 0.119 0.881 35 H 0.091 0.909 36 H 0.127 0.873 37 H 0.076 0.924 38 H 0.073 0.927 39 H 0.253 0.747 40 H 0.262 0.738 41 H 0.186 0.814 42 H 0.148 0.852 43 H 0.082 0.918 44 H 0.132 0.868 45 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 3.198 -23.903 -20.976 31.962 hybrid contribution -0.394 0.094 0.603 0.726 sum 2.804 -23.809 -20.373 31.461 Atomic orbital electron populations 1.24093 0.95946 1.02920 0.98071 1.23331 0.96513 0.98441 1.01889 1.21830 0.92190 0.96146 0.84907 0.89241 1.88956 1.22982 1.85303 1.33870 1.23768 0.85252 0.99148 0.95559 1.23277 0.95666 1.02901 0.96585 1.22719 0.95834 0.98233 0.96377 0.86898 1.21202 0.95311 0.97610 0.83247 1.44778 1.49024 1.23249 1.20733 1.16145 0.80999 0.82939 0.80338 1.90957 1.43512 1.38296 1.77561 1.42076 1.43294 1.29381 1.16302 1.17121 0.93022 0.95857 0.94953 1.20732 0.98420 0.95516 0.95265 1.20320 0.94467 1.00980 1.03953 1.19934 0.95234 0.89948 0.89629 1.83948 1.30154 1.48093 1.51299 1.21774 0.81562 1.16080 1.29255 0.88657 1.26525 1.04922 0.95060 0.95481 1.70185 1.34002 1.21908 1.29558 0.84561 0.74450 0.78529 0.78873 1.17962 1.18996 1.19352 1.21068 0.99459 1.02987 1.01108 1.20788 0.96706 0.96341 0.95925 0.88486 0.86758 0.85926 0.90680 0.88147 0.90924 0.87256 0.92387 0.92716 0.74704 0.73782 0.81448 0.85236 0.91829 0.86762 0.86244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.89 14.32 67.78 0.97 -0.92 16 2 C -0.18 -2.06 8.87 25.64 0.23 -1.83 16 3 C 0.11 1.42 3.51 30.22 0.11 1.53 16 4 H 0.09 1.35 7.36 -2.39 -0.02 1.33 16 5 O -0.39 -6.42 11.18 -148.98 -1.66 -8.09 16 6 C 0.04 0.36 7.66 72.67 0.56 0.91 16 7 C -0.15 -1.08 6.56 31.90 0.21 -0.87 16 8 C -0.11 -1.08 2.69 -9.80 -0.03 -1.10 16 9 H 0.11 0.70 7.69 -2.38 -0.02 0.69 16 10 C 0.15 2.39 4.79 86.38 0.41 2.80 16 11 N -0.72 -11.16 5.45 -478.53 -2.61 -13.77 16 12 C 0.70 18.15 8.30 179.06 1.49 19.64 16 13 O -0.62 -23.35 14.05 -4.01 -0.06 -23.40 16 14 N -0.66 -15.32 5.35 -317.05 -1.70 -17.02 16 15 C 0.08 2.81 6.28 38.15 0.24 3.05 16 16 C -0.08 -2.50 9.96 22.37 0.22 -2.27 16 17 C -0.18 -7.30 9.98 22.37 0.22 -7.08 16 18 C 0.10 5.24 6.65 22.59 0.15 5.39 16 19 O -0.23 -13.92 9.76 -23.03 -0.22 -14.15 16 20 C -0.41 -24.58 9.44 67.91 0.64 -23.94 16 21 H 0.10 5.37 5.29 -2.91 -0.02 5.36 16 22 C -0.02 -1.30 5.49 84.82 0.47 -0.84 16 23 N -0.92 -56.94 13.67 21.61 0.30 -56.64 16 24 Si 1.02 44.24 29.55 68.60 2.03 46.27 16 25 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 26 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 27 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 28 C -0.23 -10.76 9.13 22.37 0.20 -10.55 16 29 C -0.08 -3.14 8.65 22.38 0.19 -2.95 16 30 H 0.10 1.10 7.85 -2.91 -0.02 1.07 16 31 H 0.11 0.93 8.06 -2.91 -0.02 0.90 16 32 H 0.12 1.05 8.06 -2.91 -0.02 1.03 16 33 H 0.07 0.47 8.14 -2.39 -0.02 0.46 16 34 H 0.10 0.78 8.14 -2.38 -0.02 0.76 16 35 H 0.07 0.74 7.77 -2.39 -0.02 0.72 16 36 H 0.11 0.25 8.14 -2.39 -0.02 0.23 16 37 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.05 1.09 7.99 -2.39 -0.02 1.07 16 39 H 0.42 3.03 8.46 -92.71 -0.78 2.25 16 40 H 0.42 5.61 8.83 -92.71 -0.82 4.79 16 41 H 0.17 3.55 8.06 -2.91 -0.02 3.53 16 42 H 0.13 5.05 8.06 -2.91 -0.02 5.03 16 43 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 44 H 0.11 5.64 5.71 -2.91 -0.02 5.63 16 45 H 0.12 4.90 6.43 -2.91 -0.02 4.88 16 Total: -1.00 -82.72 379.08 1.78 -80.94 By element: Atomic # 1 Polarization: 25.47 SS G_CDS: -0.57 Total: 24.90 kcal Atomic # 6 Polarization: -25.32 SS G_CDS: 6.28 Total: -19.04 kcal Atomic # 7 Polarization: -83.42 SS G_CDS: -4.01 Total: -87.43 kcal Atomic # 8 Polarization: -43.69 SS G_CDS: -1.95 Total: -45.64 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Total: -82.72 1.78 -80.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001214343083.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.140 kcal (2) G-P(sol) polarization free energy of solvation -82.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds