Wall clock time and date at job start Tue Mar 31 2020 17:54:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.33010 * 1 3 3 C 1.47068 * 120.00209 * 2 1 4 4 O 1.21631 * 119.99810 * 0.02562 * 3 2 1 5 5 N 1.34775 * 120.00196 * 179.97438 * 3 2 1 6 6 C 1.40039 * 120.00217 * 185.97273 * 5 3 2 7 7 C 1.39127 * 119.92132 * 29.70087 * 6 5 3 8 8 C 1.37986 * 120.31886 * 179.97438 * 7 6 5 9 9 C 1.38696 * 120.16724 * 359.97438 * 8 7 6 10 10 O 1.35727 * 120.07964 * 179.97438 * 9 8 7 11 11 C 1.40106 * 119.84739 * 0.02562 * 9 8 7 12 12 C 1.47550 * 120.15824 * 180.02562 * 11 9 8 13 13 O 1.21586 * 119.99695 * 24.58274 * 12 11 9 14 14 N 1.34777 * 119.99803 * 204.57749 * 12 11 9 15 15 C 1.46497 * 119.99982 * 145.28553 * 14 12 11 16 16 C 1.50691 * 109.47231 * 89.99932 * 15 14 12 17 17 H 1.08001 * 120.00102 * 0.02562 * 16 15 14 18 18 C 1.37879 * 120.00174 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99827 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 120.00250 * 180.02562 * 18 16 15 21 21 H 1.48490 * 109.47331 * 59.99664 * 20 18 16 22 22 H 1.48499 * 109.46872 * 180.02562 * 20 18 16 23 23 H 1.48505 * 109.46940 * 299.99435 * 20 18 16 24 24 C 1.46507 * 120.00265 * 325.28439 * 14 12 11 25 25 C 1.52999 * 109.46712 * 324.12010 * 24 14 12 26 26 C 1.52996 * 109.47054 * 84.11953 * 24 14 12 27 27 C 1.38416 * 119.92987 * 209.97323 * 6 5 3 28 28 H 1.07997 * 120.00045 * 180.02562 * 1 2 3 29 29 H 1.07996 * 119.99878 * 0.02562 * 1 2 3 30 30 H 1.08008 * 119.99838 * 179.97438 * 2 1 3 31 31 H 0.97005 * 120.00161 * 5.98772 * 5 3 2 32 32 H 1.07996 * 119.84259 * 359.97300 * 7 6 5 33 33 H 1.08001 * 119.91420 * 179.97438 * 8 7 6 34 34 H 0.96698 * 113.99963 * 270.02482 * 10 9 8 35 35 H 1.09004 * 109.47148 * 210.00467 * 15 14 12 36 36 H 1.09008 * 109.46720 * 329.99780 * 15 14 12 37 37 H 0.97004 * 120.00135 * 180.02562 * 19 18 16 38 38 H 1.08997 * 109.46897 * 204.12265 * 24 14 12 39 39 H 1.08995 * 109.47282 * 41.87197 * 25 24 14 40 40 H 1.09003 * 109.46523 * 161.86451 * 25 24 14 41 41 H 1.08997 * 109.47198 * 281.86270 * 25 24 14 42 42 H 1.09004 * 109.47551 * 90.16418 * 26 24 14 43 43 H 1.08997 * 109.47175 * 210.17023 * 26 24 14 44 44 H 1.09007 * 109.47204 * 330.16520 * 26 24 14 45 45 H 1.08005 * 120.08116 * 0.02562 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3301 0.0000 0.0000 3 6 2.0655 1.2736 0.0000 4 8 1.4573 2.3270 0.0005 5 7 3.4132 1.2736 0.0005 6 6 4.1134 2.4798 0.1267 7 6 3.5531 3.5364 0.8375 8 6 4.2361 4.7284 0.9674 9 6 5.4878 4.8810 0.3899 10 8 6.1577 6.0544 0.5183 11 6 6.0586 3.8215 -0.3275 12 6 7.3901 3.9762 -0.9442 13 8 8.1768 4.7880 -0.4965 14 7 7.7342 3.2176 -2.0038 15 6 8.5890 3.7733 -3.0557 16 6 10.0343 3.5120 -2.7187 17 1 10.2906 2.9844 -1.8119 18 6 11.0297 3.9465 -3.5681 19 7 10.7177 4.5885 -4.6727 20 14 12.8214 3.6220 -3.1508 21 1 13.0490 2.1580 -3.0506 22 1 13.6879 4.1864 -4.2165 23 1 13.1515 4.2643 -1.8532 24 6 7.2533 1.8373 -2.1035 25 6 7.2056 1.2119 -0.7080 26 6 5.8507 1.8288 -2.7145 27 6 5.3589 2.6201 -0.4607 28 1 -0.5400 -0.9353 0.0004 29 1 -0.5400 0.9353 -0.0004 30 1 1.8701 -0.9354 0.0004 31 1 3.8983 0.4381 -0.0867 32 1 2.5790 3.4232 1.2897 33 1 3.7947 5.5445 1.5203 34 1 5.9734 6.6916 -0.1852 35 1 8.3468 3.3012 -4.0079 36 1 8.4217 4.8479 -3.1300 37 1 11.4180 4.8939 -5.2705 38 1 7.9289 1.2621 -2.7366 39 1 6.8067 1.9367 0.0015 40 1 6.5640 0.3309 -0.7266 41 1 8.2117 0.9224 -0.4050 42 1 5.9271 1.7491 -3.7990 43 1 5.2904 0.9783 -2.3262 44 1 5.3351 2.7532 -2.4537 45 1 5.7907 1.8008 -1.0163 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001263724326.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:36 Heat of formation + Delta-G solvation = 40.322796 kcal Electronic energy + Delta-G solvation = -29441.514081 eV Core-core repulsion = 25429.546264 eV Total energy + Delta-G solvation = -4011.967817 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.51083 -40.08957 -38.24785 -37.37041 -35.91765 -34.35777 -33.50521 -33.25501 -31.74839 -30.43887 -28.76200 -27.31704 -26.97471 -24.45074 -23.78720 -23.04561 -22.21889 -21.15098 -20.22482 -18.59469 -18.31769 -17.89082 -17.18034 -16.43489 -16.00216 -15.87707 -15.52846 -15.27203 -14.99163 -14.72831 -14.57347 -14.41589 -13.98396 -13.89221 -13.45246 -13.34535 -12.90918 -12.79263 -12.42996 -12.28679 -12.17987 -11.79728 -11.76445 -11.48903 -11.18688 -11.13463 -10.83870 -10.62416 -10.55087 -10.45932 -10.27123 -10.17955 -10.08024 -9.73299 -9.61704 -8.96412 -8.59962 -8.39562 -7.95606 -7.54840 -6.00442 -4.04133 0.80807 1.07552 1.35737 2.78180 2.87825 3.28146 3.35235 3.39372 3.44233 3.82391 3.88867 4.32878 4.41098 4.48739 4.64672 4.67970 4.82859 4.98351 5.10741 5.17216 5.21224 5.30428 5.33684 5.40707 5.56416 5.63543 5.74658 5.77420 5.79742 5.85244 5.97711 6.01601 6.13326 6.20095 6.27871 6.37396 6.42095 6.54240 6.81536 7.08303 7.14662 7.34416 7.63975 7.82305 7.91268 7.96806 8.26237 8.41965 8.90195 9.04456 9.60637 11.07048 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.018475 B = 0.003317 C = 0.002978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.208616 B = 8439.950843 C = 9399.311526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.216 4.216 3 C 0.541 3.459 4 O -0.526 6.526 5 N -0.662 5.662 6 C 0.104 3.896 7 C -0.086 4.086 8 C -0.150 4.150 9 C 0.150 3.850 10 O -0.478 6.478 11 C -0.152 4.152 12 C 0.559 3.441 13 O -0.489 6.489 14 N -0.614 5.614 15 C 0.257 3.743 16 C -0.519 4.519 17 H 0.059 0.941 18 C 0.059 3.941 19 N -0.900 5.900 20 Si 0.897 3.103 21 H -0.278 1.278 22 H -0.287 1.287 23 H -0.276 1.276 24 C 0.137 3.863 25 C -0.211 4.211 26 C -0.183 4.183 27 C -0.146 4.146 28 H 0.117 0.883 29 H 0.115 0.885 30 H 0.130 0.870 31 H 0.411 0.589 32 H 0.140 0.860 33 H 0.134 0.866 34 H 0.390 0.610 35 H 0.034 0.966 36 H 0.032 0.968 37 H 0.263 0.737 38 H 0.099 0.901 39 H 0.095 0.905 40 H 0.068 0.932 41 H 0.066 0.934 42 H 0.061 0.939 43 H 0.058 0.942 44 H 0.073 0.927 45 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.137 -11.322 7.980 24.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.236 4.236 3 C 0.332 3.668 4 O -0.404 6.404 5 N -0.306 5.306 6 C 0.011 3.989 7 C -0.106 4.106 8 C -0.169 4.169 9 C 0.103 3.897 10 O -0.288 6.288 11 C -0.157 4.157 12 C 0.346 3.654 13 O -0.362 6.362 14 N -0.349 5.349 15 C 0.138 3.862 16 C -0.558 4.558 17 H 0.077 0.923 18 C -0.142 4.142 19 N -0.539 5.539 20 Si 0.725 3.275 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.201 1.201 24 C 0.031 3.969 25 C -0.267 4.267 26 C -0.241 4.241 27 C -0.164 4.164 28 H 0.135 0.865 29 H 0.133 0.867 30 H 0.148 0.852 31 H 0.246 0.754 32 H 0.157 0.843 33 H 0.151 0.849 34 H 0.247 0.753 35 H 0.052 0.948 36 H 0.050 0.950 37 H 0.072 0.928 38 H 0.117 0.883 39 H 0.113 0.887 40 H 0.087 0.913 41 H 0.085 0.915 42 H 0.080 0.920 43 H 0.077 0.923 44 H 0.092 0.908 45 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -19.818 -10.307 8.560 23.922 hybrid contribution 1.059 -0.420 -0.347 1.191 sum -18.759 -10.726 8.213 23.118 Atomic orbital electron populations 1.24795 0.95292 1.03556 0.89077 1.22710 0.96485 0.96647 1.07802 1.18817 0.81686 0.90299 0.76044 1.90803 1.68036 1.33084 1.48453 1.43338 1.06399 1.08574 1.72318 1.17588 0.92988 0.87518 1.00837 1.21162 1.00375 0.92111 0.96957 1.21211 0.93811 0.98778 1.03093 1.18528 0.89672 0.87006 0.94450 1.84813 1.68339 1.24118 1.51522 1.20723 0.97666 0.95159 1.02106 1.17822 0.85255 0.82058 0.80285 1.90802 1.50400 1.37172 1.57854 1.47950 1.52174 1.11045 1.23682 1.19225 0.88602 0.94406 0.83984 1.21457 0.91000 1.36559 1.06758 0.92279 1.24940 0.99232 0.95106 0.94959 1.69916 1.33293 1.38786 1.11932 0.86574 0.84470 0.78382 0.78098 1.20335 1.21309 1.20149 1.21040 0.95072 0.84601 0.96137 1.23418 1.03419 1.01533 0.98360 1.22905 0.97255 1.02075 1.01828 1.23973 0.93428 1.00876 0.98138 0.86464 0.86656 0.85208 0.75374 0.84270 0.84862 0.75272 0.94785 0.95002 0.92767 0.88293 0.88735 0.91339 0.91515 0.91958 0.92300 0.90821 0.77326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.47 14.31 28.92 0.41 -0.06 16 2 C -0.22 -1.34 10.03 -37.82 -0.38 -1.72 16 3 C 0.54 5.41 7.52 -12.68 -0.10 5.31 16 4 O -0.53 -7.15 13.68 5.25 0.07 -7.08 16 5 N -0.66 -6.12 5.35 -10.95 -0.06 -6.18 16 6 C 0.10 1.30 6.34 -83.71 -0.53 0.77 16 7 C -0.09 -1.15 8.66 -39.34 -0.34 -1.49 16 8 C -0.15 -2.07 9.97 -39.50 -0.39 -2.46 16 9 C 0.15 2.47 6.69 -38.71 -0.26 2.21 16 10 O -0.48 -8.10 11.86 -39.17 -0.46 -8.57 16 11 C -0.15 -2.63 4.98 -104.86 -0.52 -3.15 16 12 C 0.56 12.08 6.10 -12.46 -0.08 12.00 16 13 O -0.49 -12.71 15.79 -14.99 -0.24 -12.95 16 14 N -0.61 -12.93 2.36 -168.69 -0.40 -13.32 16 15 C 0.26 6.59 5.07 -5.20 -0.03 6.56 16 16 C -0.52 -14.75 9.28 -34.44 -0.32 -15.07 16 17 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 18 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 19 N -0.90 -26.62 13.29 55.43 0.74 -25.88 16 20 Si 0.90 22.18 29.54 -169.99 -5.02 17.16 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 22 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 23 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 24 C 0.14 2.17 3.18 -67.93 -0.22 1.96 16 25 C -0.21 -2.81 7.74 37.16 0.29 -2.52 16 26 C -0.18 -2.36 8.12 37.16 0.30 -2.06 16 27 C -0.15 -2.00 4.04 -38.98 -0.16 -2.16 16 28 H 0.12 0.29 8.06 -52.49 -0.42 -0.13 16 29 H 0.12 0.76 7.49 -52.49 -0.39 0.37 16 30 H 0.13 0.43 8.06 -52.48 -0.42 0.00 16 31 H 0.41 2.41 8.79 -40.82 -0.36 2.06 16 32 H 0.14 1.82 6.14 -52.49 -0.32 1.50 16 33 H 0.13 1.56 8.06 -52.49 -0.42 1.14 16 34 H 0.39 5.06 9.06 45.56 0.41 5.47 16 35 H 0.03 0.87 8.07 -51.93 -0.42 0.46 16 36 H 0.03 0.91 8.01 -51.92 -0.42 0.49 16 37 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 38 H 0.10 1.62 8.03 -51.93 -0.42 1.21 16 39 H 0.09 1.39 3.31 -83.34 -0.28 1.11 16 40 H 0.07 0.61 7.44 -51.93 -0.39 0.22 16 41 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.06 0.55 6.99 -51.93 -0.36 0.19 16 44 H 0.07 1.07 5.50 -51.93 -0.29 0.78 16 45 H 0.21 2.57 0.54 -130.96 -0.07 2.50 16 LS Contribution 366.60 15.07 5.52 5.52 Total: -1.00 -37.08 366.60 -7.21 -44.29 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: -4.95 Total: 7.29 kcal Atomic # 6 Polarization: 2.13 SS G_CDS: -2.41 Total: -0.28 kcal Atomic # 7 Polarization: -45.66 SS G_CDS: 0.28 Total: -45.38 kcal Atomic # 8 Polarization: -27.97 SS G_CDS: -0.63 Total: -28.60 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -37.08 -7.21 -44.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263724326.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.615 kcal (2) G-P(sol) polarization free energy of solvation -37.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.293 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds