Wall clock time and date at job start Tue Mar 31 2020 17:54:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.33010 * 1 3 3 C 1.47068 * 120.00209 * 2 1 4 4 O 1.21631 * 119.99810 * 0.02562 * 3 2 1 5 5 N 1.34775 * 120.00196 * 179.97438 * 3 2 1 6 6 C 1.40039 * 120.00217 * 185.97273 * 5 3 2 7 7 C 1.39127 * 119.92132 * 29.70087 * 6 5 3 8 8 C 1.37986 * 120.31886 * 179.97438 * 7 6 5 9 9 C 1.38696 * 120.16724 * 359.97438 * 8 7 6 10 10 O 1.35727 * 120.07964 * 179.97438 * 9 8 7 11 11 C 1.40106 * 119.84739 * 0.02562 * 9 8 7 12 12 C 1.47550 * 120.15824 * 180.02562 * 11 9 8 13 13 O 1.21586 * 119.99695 * 24.58274 * 12 11 9 14 14 N 1.34777 * 119.99803 * 204.57749 * 12 11 9 15 15 C 1.46497 * 119.99982 * 145.28553 * 14 12 11 16 16 C 1.50691 * 109.47231 * 89.99932 * 15 14 12 17 17 H 1.08001 * 120.00102 * 0.02562 * 16 15 14 18 18 C 1.37879 * 120.00174 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99827 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 120.00250 * 180.02562 * 18 16 15 21 21 H 1.48490 * 109.47331 * 59.99664 * 20 18 16 22 22 H 1.48499 * 109.46872 * 180.02562 * 20 18 16 23 23 H 1.48505 * 109.46940 * 299.99435 * 20 18 16 24 24 C 1.46507 * 120.00265 * 325.28439 * 14 12 11 25 25 C 1.52999 * 109.46712 * 324.12010 * 24 14 12 26 26 C 1.52996 * 109.47054 * 84.11953 * 24 14 12 27 27 C 1.38416 * 119.92987 * 209.97323 * 6 5 3 28 28 H 1.07997 * 120.00045 * 180.02562 * 1 2 3 29 29 H 1.07996 * 119.99878 * 0.02562 * 1 2 3 30 30 H 1.08008 * 119.99838 * 179.97438 * 2 1 3 31 31 H 0.97005 * 120.00161 * 5.98772 * 5 3 2 32 32 H 1.07996 * 119.84259 * 359.97300 * 7 6 5 33 33 H 1.08001 * 119.91420 * 179.97438 * 8 7 6 34 34 H 0.96698 * 113.99963 * 270.02482 * 10 9 8 35 35 H 1.09004 * 109.47148 * 210.00467 * 15 14 12 36 36 H 1.09008 * 109.46720 * 329.99780 * 15 14 12 37 37 H 0.97004 * 120.00135 * 180.02562 * 19 18 16 38 38 H 1.08997 * 109.46897 * 204.12265 * 24 14 12 39 39 H 1.08995 * 109.47282 * 41.87197 * 25 24 14 40 40 H 1.09003 * 109.46523 * 161.86451 * 25 24 14 41 41 H 1.08997 * 109.47198 * 281.86270 * 25 24 14 42 42 H 1.09004 * 109.47551 * 90.16418 * 26 24 14 43 43 H 1.08997 * 109.47175 * 210.17023 * 26 24 14 44 44 H 1.09007 * 109.47204 * 330.16520 * 26 24 14 45 45 H 1.08005 * 120.08116 * 0.02562 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3301 0.0000 0.0000 3 6 2.0655 1.2736 0.0000 4 8 1.4573 2.3270 0.0005 5 7 3.4132 1.2736 0.0005 6 6 4.1134 2.4798 0.1267 7 6 3.5531 3.5364 0.8375 8 6 4.2361 4.7284 0.9674 9 6 5.4878 4.8810 0.3899 10 8 6.1577 6.0544 0.5183 11 6 6.0586 3.8215 -0.3275 12 6 7.3901 3.9762 -0.9442 13 8 8.1768 4.7880 -0.4965 14 7 7.7342 3.2176 -2.0038 15 6 8.5890 3.7733 -3.0557 16 6 10.0343 3.5120 -2.7187 17 1 10.2906 2.9844 -1.8119 18 6 11.0297 3.9465 -3.5681 19 7 10.7177 4.5885 -4.6727 20 14 12.8214 3.6220 -3.1508 21 1 13.0490 2.1580 -3.0506 22 1 13.6879 4.1864 -4.2165 23 1 13.1515 4.2643 -1.8532 24 6 7.2533 1.8373 -2.1035 25 6 7.2056 1.2119 -0.7080 26 6 5.8507 1.8288 -2.7145 27 6 5.3589 2.6201 -0.4607 28 1 -0.5400 -0.9353 0.0004 29 1 -0.5400 0.9353 -0.0004 30 1 1.8701 -0.9354 0.0004 31 1 3.8983 0.4381 -0.0867 32 1 2.5790 3.4232 1.2897 33 1 3.7947 5.5445 1.5203 34 1 5.9734 6.6916 -0.1852 35 1 8.3468 3.3012 -4.0079 36 1 8.4217 4.8479 -3.1300 37 1 11.4180 4.8939 -5.2705 38 1 7.9289 1.2621 -2.7366 39 1 6.8067 1.9367 0.0015 40 1 6.5640 0.3309 -0.7266 41 1 8.2117 0.9224 -0.4050 42 1 5.9271 1.7491 -3.7990 43 1 5.2904 0.9783 -2.3262 44 1 5.3351 2.7532 -2.4537 45 1 5.7907 1.8008 -1.0163 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001263724326.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:35 Heat of formation + Delta-G solvation = 13.231796 kcal Electronic energy + Delta-G solvation = -29442.688835 eV Core-core repulsion = 25429.546264 eV Total energy + Delta-G solvation = -4013.142571 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.72589 -41.07030 -39.53537 -38.75803 -37.24434 -35.51357 -35.23037 -33.80989 -33.55463 -31.71916 -29.89956 -29.00740 -28.28856 -25.67904 -25.00933 -24.32031 -23.83393 -22.27773 -20.95082 -19.87732 -19.54101 -18.71264 -18.61314 -18.24297 -17.39175 -17.12184 -16.80081 -16.59958 -16.34876 -16.08611 -15.67897 -15.54332 -15.45225 -14.86664 -14.64666 -14.36824 -14.21707 -14.05696 -13.90228 -13.72542 -13.48522 -13.14914 -12.84366 -12.75363 -12.72031 -12.69483 -12.51623 -12.26899 -12.05580 -11.89697 -11.71159 -11.42116 -11.10781 -10.89918 -10.70766 -10.65515 -10.52678 -9.81151 -9.33101 -8.96301 -8.20040 -6.33921 -0.23902 0.06634 0.58202 1.34860 1.39745 1.46812 1.71684 2.04066 2.23303 2.27651 2.42682 2.68635 3.07793 3.23679 3.51894 3.57950 3.75844 3.81651 4.04442 4.07800 4.19583 4.35075 4.40303 4.45097 4.59393 4.65317 4.73325 4.80694 4.83478 4.86899 5.01401 5.04549 5.11257 5.11996 5.20926 5.29601 5.34951 5.37859 5.41623 5.51828 5.63207 5.79914 5.93625 6.08560 6.46251 6.71152 6.75341 6.79041 7.12539 7.23911 7.39657 8.85125 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.018475 B = 0.003317 C = 0.002978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.208616 B = 8439.950843 C = 9399.311526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.223 4.223 3 C 0.536 3.464 4 O -0.569 6.569 5 N -0.650 5.650 6 C 0.115 3.885 7 C -0.084 4.084 8 C -0.145 4.145 9 C 0.131 3.869 10 O -0.499 6.499 11 C -0.175 4.175 12 C 0.557 3.443 13 O -0.552 6.552 14 N -0.619 5.619 15 C 0.272 3.728 16 C -0.535 4.535 17 H 0.046 0.954 18 C 0.009 3.991 19 N -0.928 5.928 20 Si 0.961 3.039 21 H -0.260 1.260 22 H -0.276 1.276 23 H -0.284 1.284 24 C 0.123 3.877 25 C -0.209 4.209 26 C -0.176 4.176 27 C -0.129 4.129 28 H 0.151 0.849 29 H 0.095 0.905 30 H 0.167 0.833 31 H 0.430 0.570 32 H 0.146 0.854 33 H 0.153 0.847 34 H 0.401 0.599 35 H 0.031 0.969 36 H -0.010 1.010 37 H 0.267 0.733 38 H 0.092 0.908 39 H 0.083 0.917 40 H 0.127 0.873 41 H 0.052 0.948 42 H 0.062 0.938 43 H 0.107 0.893 44 H 0.057 0.943 45 H 0.227 0.773 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.106 -15.045 8.588 28.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.244 4.244 3 C 0.329 3.671 4 O -0.450 6.450 5 N -0.295 5.295 6 C 0.021 3.979 7 C -0.104 4.104 8 C -0.164 4.164 9 C 0.085 3.915 10 O -0.311 6.311 11 C -0.180 4.180 12 C 0.347 3.653 13 O -0.430 6.430 14 N -0.353 5.353 15 C 0.151 3.849 16 C -0.574 4.574 17 H 0.065 0.935 18 C -0.190 4.190 19 N -0.568 5.568 20 Si 0.786 3.214 21 H -0.185 1.185 22 H -0.201 1.201 23 H -0.210 1.210 24 C 0.020 3.980 25 C -0.265 4.265 26 C -0.233 4.233 27 C -0.148 4.148 28 H 0.169 0.831 29 H 0.114 0.886 30 H 0.185 0.815 31 H 0.270 0.730 32 H 0.164 0.836 33 H 0.170 0.830 34 H 0.259 0.741 35 H 0.049 0.951 36 H 0.008 0.992 37 H 0.076 0.924 38 H 0.110 0.890 39 H 0.101 0.899 40 H 0.145 0.855 41 H 0.071 0.929 42 H 0.081 0.919 43 H 0.126 0.874 44 H 0.076 0.924 45 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -21.817 -14.115 9.154 27.550 hybrid contribution 1.529 0.721 -0.538 1.773 sum -20.288 -13.394 8.617 25.792 Atomic orbital electron populations 1.25060 0.95249 1.04309 0.87079 1.22828 0.96608 0.95908 1.09035 1.19561 0.81614 0.91230 0.74707 1.90791 1.68777 1.34974 1.50411 1.43284 1.06371 1.08106 1.71761 1.17569 0.92362 0.88640 0.99366 1.21368 1.00379 0.92100 0.96541 1.21340 0.92663 0.99785 1.02571 1.18783 0.90726 0.86664 0.95364 1.84765 1.69125 1.24856 1.52316 1.20421 0.96000 0.97474 1.04098 1.18478 0.86393 0.80732 0.79727 1.90748 1.52491 1.39674 1.60097 1.47955 1.51574 1.13299 1.22437 1.18711 0.88572 0.92187 0.85392 1.21681 0.92674 1.36731 1.06325 0.93539 1.25781 1.03655 0.94729 0.94801 1.70019 1.34749 1.39336 1.12721 0.85566 0.79192 0.79126 0.77510 1.18468 1.20105 1.20960 1.21447 0.96687 0.81576 0.98286 1.23436 1.04036 1.03081 0.95919 1.22821 0.95277 1.03265 1.01966 1.23952 0.93379 0.99820 0.97632 0.83078 0.88616 0.81521 0.73006 0.83606 0.82958 0.74087 0.95083 0.99174 0.92432 0.88985 0.89921 0.85452 0.92913 0.91872 0.87444 0.92389 0.75807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.54 14.31 66.65 0.95 0.41 16 2 C -0.22 -1.79 10.03 23.42 0.23 -1.56 16 3 C 0.54 8.92 7.52 86.56 0.65 9.57 16 4 O -0.57 -14.33 13.68 -4.13 -0.06 -14.39 16 5 N -0.65 -9.35 5.35 -306.79 -1.64 -10.99 16 6 C 0.12 2.58 6.34 38.09 0.24 2.82 16 7 C -0.08 -2.09 8.66 22.42 0.19 -1.89 16 8 C -0.14 -3.91 9.97 22.32 0.22 -3.69 16 9 C 0.13 4.43 6.69 22.83 0.15 4.58 16 10 O -0.50 -18.02 11.86 -71.10 -0.84 -18.87 16 11 C -0.18 -6.19 4.98 -20.02 -0.10 -6.29 16 12 C 0.56 25.37 6.10 86.70 0.53 25.90 16 13 O -0.55 -30.85 15.79 15.41 0.24 -30.61 16 14 N -0.62 -27.17 2.36 -805.87 -1.90 -29.07 16 15 C 0.27 14.81 5.07 85.63 0.43 15.24 16 16 C -0.54 -31.72 9.28 25.60 0.24 -31.48 16 17 H 0.05 2.81 7.81 -2.91 -0.02 2.78 16 18 C 0.01 0.53 5.46 84.65 0.46 0.99 16 19 N -0.93 -56.42 13.29 21.45 0.28 -56.13 16 20 Si 0.96 46.23 29.54 68.60 2.03 48.26 16 21 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 22 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 23 H -0.28 -13.93 7.11 99.48 0.71 -13.22 16 24 C 0.12 3.82 3.18 44.99 0.14 3.96 16 25 C -0.21 -5.08 7.74 71.98 0.56 -4.52 16 26 C -0.18 -4.11 8.12 71.98 0.58 -3.53 16 27 C -0.13 -3.33 4.04 22.66 0.09 -3.24 16 28 H 0.15 0.01 8.06 -2.91 -0.02 -0.01 16 29 H 0.10 1.06 7.49 -2.91 -0.02 1.04 16 30 H 0.17 0.08 8.06 -2.91 -0.02 0.06 16 31 H 0.43 2.66 8.79 -92.70 -0.81 1.85 16 32 H 0.15 3.54 6.14 -2.91 -0.02 3.52 16 33 H 0.15 3.43 8.06 -2.91 -0.02 3.41 16 34 H 0.40 11.50 9.06 -74.06 -0.67 10.83 16 35 H 0.03 1.68 8.07 -2.38 -0.02 1.66 16 36 H -0.01 -0.61 8.01 -2.38 -0.02 -0.63 16 37 H 0.27 15.25 8.31 -92.70 -0.77 14.48 16 38 H 0.09 2.97 8.03 -2.39 -0.02 2.95 16 39 H 0.08 2.30 3.31 -31.89 -0.11 2.19 16 40 H 0.13 1.57 7.44 -2.39 -0.02 1.55 16 41 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 42 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 43 H 0.11 1.46 6.99 -2.39 -0.02 1.44 16 44 H 0.06 1.59 5.50 -2.38 -0.01 1.58 16 45 H 0.23 4.86 0.54 -76.62 -0.04 4.82 16 Total: -1.00 -87.45 366.60 3.14 -84.31 By element: Atomic # 1 Polarization: 20.78 SS G_CDS: -0.56 Total: 20.22 kcal Atomic # 6 Polarization: 1.69 SS G_CDS: 5.59 Total: 7.28 kcal Atomic # 7 Polarization: -92.94 SS G_CDS: -3.26 Total: -96.20 kcal Atomic # 8 Polarization: -63.21 SS G_CDS: -0.66 Total: -63.87 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 2.03 Total: 48.26 kcal Total: -87.45 3.14 -84.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263724326.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.541 kcal (2) G-P(sol) polarization free energy of solvation -87.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.309 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds