Wall clock time and date at job start Tue Mar 31 2020 17:20:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47199 * 1 3 3 C 1.17401 * 179.97438 * 2 1 4 4 C 1.43197 * 179.97438 * 0.22497 * 3 2 1 5 5 O 1.21614 * 120.00283 * 305.79453 * 4 3 2 6 6 N 1.34778 * 119.99983 * 125.80199 * 4 3 2 7 7 C 1.46932 * 120.68023 * 359.97438 * 6 4 3 8 8 C 1.53192 * 108.88505 * 125.95526 * 7 6 4 9 9 C 1.53127 * 109.29298 * 55.11503 * 8 7 6 10 10 C 1.52441 * 109.60383 * 299.58015 * 9 8 7 11 11 C 1.53742 * 110.34695 * 182.19182 * 10 9 8 12 12 C 1.51453 * 103.35948 * 118.79161 * 11 10 9 13 13 O 1.21229 * 125.41414 * 179.97438 * 12 11 10 14 14 N 1.33960 * 109.17480 * 359.97438 * 12 11 10 15 15 C 1.46494 * 122.78809 * 179.97438 * 14 12 11 16 16 C 1.53008 * 109.47239 * 90.02486 * 15 14 12 17 17 C 1.50697 * 109.47197 * 180.02562 * 16 15 14 18 18 H 1.08004 * 120.00064 * 0.02562 * 17 16 15 19 19 C 1.37878 * 119.99982 * 179.97438 * 17 16 15 20 20 N 1.31514 * 119.99876 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 119.99989 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.46917 * 90.00401 * 21 19 17 23 23 H 1.48500 * 109.47072 * 210.00139 * 21 19 17 24 24 H 1.48496 * 109.47499 * 330.00159 * 21 19 17 25 25 C 1.34054 * 114.42865 * 0.02562 * 14 12 11 26 26 O 1.21230 * 125.50203 * 180.02562 * 25 14 12 27 27 C 1.47041 * 120.68775 * 180.02562 * 6 4 3 28 28 H 1.08994 * 109.47604 * 53.97437 * 1 2 3 29 29 H 1.09010 * 109.46934 * 173.97752 * 1 2 3 30 30 H 1.09003 * 109.47614 * 293.97190 * 1 2 3 31 31 H 1.08997 * 109.57587 * 6.12757 * 7 6 4 32 32 H 1.09007 * 109.56633 * 245.76877 * 7 6 4 33 33 H 1.09006 * 109.49773 * 295.16603 * 8 7 6 34 34 H 1.08998 * 109.52998 * 175.08158 * 8 7 6 35 35 H 1.09002 * 109.44451 * 59.61519 * 9 8 7 36 36 H 1.09003 * 109.44701 * 179.54909 * 9 8 7 37 37 H 1.09000 * 110.64752 * 237.25630 * 11 10 9 38 38 H 1.09002 * 110.64502 * 0.16309 * 11 10 9 39 39 H 1.09003 * 109.47692 * 210.02269 * 15 14 12 40 40 H 1.08999 * 109.47233 * 330.02671 * 15 14 12 41 41 H 1.08997 * 109.46886 * 300.00098 * 16 15 14 42 42 H 1.08999 * 109.46858 * 59.99954 * 16 15 14 43 43 H 0.96994 * 120.00163 * 179.97438 * 20 19 17 44 44 H 1.09000 * 109.57626 * 352.49684 * 27 6 4 45 45 H 1.09000 * 109.57300 * 112.75503 * 27 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4720 0.0000 0.0000 3 6 2.6460 0.0005 0.0000 4 6 4.0780 0.0005 0.0000 5 8 4.6861 -0.6155 0.8542 6 7 4.7519 0.6833 -0.9467 7 6 4.0323 1.4323 -1.9860 8 6 4.5311 2.8807 -1.9885 9 6 6.0527 2.8916 -2.1599 10 6 6.7030 2.1407 -1.0036 11 6 8.2346 2.1878 -1.1296 12 6 8.6675 2.9065 0.1313 13 8 9.8128 3.1593 0.4378 14 7 7.5836 3.2186 0.8541 15 6 7.6610 3.9219 2.1368 16 6 7.5928 5.4314 1.8958 17 6 7.6731 6.1549 3.2153 18 1 7.7640 5.5942 4.1339 19 6 7.6314 7.5326 3.2497 20 7 7.5211 8.2153 2.1311 21 14 7.7301 8.4294 4.8854 22 1 9.1514 8.7120 5.2099 23 1 6.9794 9.7075 4.7952 24 1 7.1381 7.5818 5.9513 25 6 6.4223 2.8329 0.3067 26 8 5.3237 3.0122 0.7869 27 6 6.2222 0.6932 -0.9613 28 1 -0.3634 0.6044 -0.8311 29 1 -0.3633 -1.0221 -0.1078 30 1 -0.3634 0.4175 0.9390 31 1 2.9632 1.4147 -1.7748 32 1 4.2215 0.9794 -2.9594 33 1 4.2678 3.3578 -1.0444 34 1 4.0682 3.4241 -2.8123 35 1 6.3154 2.4073 -3.1005 36 1 6.4095 3.9215 -2.1700 37 1 8.6490 1.1801 -1.1589 38 1 8.5302 2.7495 -2.0157 39 1 6.8273 3.6170 2.7693 40 1 8.6009 3.6749 2.6305 41 1 8.4265 5.7363 1.2634 42 1 6.6529 5.6783 1.4021 43 1 7.4914 9.1844 2.1553 44 1 6.5996 0.2086 -0.0609 45 1 6.5821 0.1601 -1.8413 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269204520.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:20:30 Heat of formation + Delta-G solvation = -50.122058 kcal Electronic energy + Delta-G solvation = -29261.739334 eV Core-core repulsion = 25245.849534 eV Total energy + Delta-G solvation = -4015.889800 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.14258 -40.02308 -38.35288 -37.26109 -35.58055 -34.73123 -34.19775 -33.01269 -32.21713 -30.24692 -29.29021 -27.79641 -26.11002 -25.29900 -24.20585 -22.63818 -22.01172 -21.80643 -20.46314 -18.72198 -18.06950 -17.00052 -16.73135 -16.40256 -16.11162 -15.95013 -15.46561 -15.18035 -14.77605 -14.46489 -14.38882 -14.26193 -14.07842 -14.03758 -13.82902 -13.70296 -13.53913 -13.17070 -12.95921 -12.75558 -12.67220 -12.35925 -12.04486 -11.56137 -11.38152 -11.24226 -11.03319 -10.96627 -10.80080 -10.69029 -10.50847 -10.26761 -10.16764 -10.10228 -9.97567 -9.60321 -9.24660 -8.90228 -8.87865 -8.40168 -6.05247 -4.08634 1.42416 1.79499 2.07037 2.71516 2.92879 3.03699 3.31822 3.37362 3.41089 3.41870 3.82848 3.98233 4.17943 4.29702 4.37041 4.44052 4.73065 4.74356 4.80644 4.98935 5.11694 5.12475 5.14216 5.21727 5.27031 5.28775 5.31519 5.38687 5.43544 5.45968 5.53842 5.71113 5.83430 5.93738 5.97867 6.14860 6.21590 6.32131 6.66210 7.04059 7.08315 7.20696 7.55419 7.66530 7.68935 7.89656 7.90644 8.12972 8.31288 8.96169 9.55453 11.06498 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.012178 B = 0.003501 C = 0.003061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2298.749398 B = 7995.658562 C = 9144.118191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 C -0.088 4.088 3 C -0.220 4.220 4 C 0.642 3.358 5 O -0.525 6.525 6 N -0.597 5.597 7 C 0.113 3.887 8 C -0.149 4.149 9 C -0.098 4.098 10 C -0.116 4.116 11 C -0.149 4.149 12 C 0.524 3.476 13 O -0.480 6.480 14 N -0.566 5.566 15 C 0.101 3.899 16 C 0.016 3.984 17 C -0.522 4.522 18 H 0.059 0.941 19 C 0.060 3.940 20 N -0.893 5.893 21 Si 0.897 3.103 22 H -0.279 1.279 23 H -0.286 1.286 24 H -0.272 1.272 25 C 0.536 3.464 26 O -0.464 6.464 27 C 0.138 3.862 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.085 0.915 32 H 0.073 0.927 33 H 0.091 0.909 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.079 0.921 37 H 0.120 0.880 38 H 0.123 0.877 39 H 0.080 0.920 40 H 0.082 0.918 41 H 0.021 0.979 42 H 0.021 0.979 43 H 0.262 0.738 44 H 0.100 0.900 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.198 -16.994 -15.204 24.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.090 4.090 3 C -0.222 4.222 4 C 0.431 3.569 5 O -0.402 6.402 6 N -0.329 5.329 7 C -0.009 4.009 8 C -0.187 4.187 9 C -0.136 4.136 10 C -0.120 4.120 11 C -0.189 4.189 12 C 0.312 3.688 13 O -0.352 6.352 14 N -0.307 5.307 15 C -0.018 4.018 16 C -0.021 4.021 17 C -0.560 4.560 18 H 0.077 0.923 19 C -0.142 4.142 20 N -0.532 5.532 21 Si 0.725 3.275 22 H -0.205 1.205 23 H -0.211 1.211 24 H -0.197 1.197 25 C 0.323 3.677 26 O -0.334 6.334 27 C 0.015 3.985 28 H 0.108 0.892 29 H 0.108 0.892 30 H 0.110 0.890 31 H 0.104 0.896 32 H 0.092 0.908 33 H 0.110 0.890 34 H 0.101 0.899 35 H 0.102 0.898 36 H 0.098 0.902 37 H 0.138 0.862 38 H 0.141 0.859 39 H 0.099 0.901 40 H 0.100 0.900 41 H 0.040 0.960 42 H 0.039 0.961 43 H 0.071 0.929 44 H 0.119 0.881 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -9.855 -16.893 -14.334 24.248 hybrid contribution 0.081 0.835 0.882 1.218 sum -9.774 -16.057 -13.451 23.115 Atomic orbital electron populations 1.19116 0.83498 1.03876 1.04207 1.22675 0.93825 0.95611 0.96896 1.20502 0.92396 1.05006 1.04342 1.14664 0.82775 0.78822 0.80656 1.90846 1.68703 1.43860 1.36772 1.47747 1.06398 1.49749 1.29021 1.21751 0.97031 0.91791 0.90354 1.22108 0.95330 0.96315 1.04904 1.21402 0.95563 1.00948 0.95677 1.21536 0.96340 0.97916 0.96206 1.22555 0.93381 1.04200 0.98749 1.20636 0.84685 0.77982 0.85468 1.90768 1.19006 1.52169 1.73222 1.47033 1.08569 1.51654 1.23482 1.22263 1.02857 0.95961 0.80738 1.19355 0.97797 0.86842 0.98151 1.21016 1.51108 0.91481 0.92433 0.92294 1.24989 0.94935 0.97608 0.96663 1.69965 1.49969 1.06938 1.26281 0.86504 0.78146 0.79102 0.83756 1.20518 1.21129 1.19718 1.20201 0.83985 0.77657 0.85890 1.90710 1.23799 1.52938 1.65961 1.21449 0.79227 0.93022 1.04805 0.89159 0.89192 0.88970 0.89618 0.90845 0.89029 0.89911 0.89801 0.90213 0.86221 0.85865 0.90109 0.90005 0.96038 0.96103 0.92870 0.88140 0.89056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.27 10.32 34.37 0.35 0.08 16 2 C -0.09 -0.90 14.08 -37.12 -0.52 -1.43 16 3 C -0.22 -2.90 11.58 -38.84 -0.45 -3.35 16 4 C 0.64 9.59 7.55 -14.33 -0.11 9.48 16 5 O -0.52 -9.63 16.51 5.27 0.09 -9.54 16 6 N -0.60 -7.06 2.53 -175.91 -0.45 -7.50 16 7 C 0.11 0.99 6.31 -3.71 -0.02 0.97 16 8 C -0.15 -1.45 5.81 -26.57 -0.15 -1.60 16 9 C -0.10 -0.91 4.52 -26.95 -0.12 -1.03 16 10 C -0.12 -1.32 0.69 -155.71 -0.11 -1.43 16 11 C -0.15 -1.53 6.30 -27.13 -0.17 -1.71 16 12 C 0.52 8.79 8.09 -10.98 -0.09 8.70 16 13 O -0.48 -9.69 17.48 5.60 0.10 -9.60 16 14 N -0.57 -10.67 2.56 -115.41 -0.30 -10.96 16 15 C 0.10 2.26 5.50 -4.04 -0.02 2.24 16 16 C 0.02 0.44 5.30 -27.88 -0.15 0.29 16 17 C -0.52 -15.17 9.11 -34.44 -0.31 -15.48 16 18 H 0.06 1.65 7.74 -52.48 -0.41 1.24 16 19 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 20 N -0.89 -27.22 13.29 55.43 0.74 -26.49 16 21 Si 0.90 22.10 29.54 -169.99 -5.02 17.08 16 22 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 23 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 24 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 25 C 0.54 9.21 6.49 -11.25 -0.07 9.14 16 26 O -0.46 -9.38 14.97 5.60 0.08 -9.29 16 27 C 0.14 1.44 4.94 -3.96 -0.02 1.42 16 28 H 0.09 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.09 0.33 8.14 -51.92 -0.42 -0.09 16 30 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.09 0.74 6.32 -51.93 -0.33 0.42 16 32 H 0.07 0.44 8.14 -51.92 -0.42 0.02 16 33 H 0.09 1.26 5.96 -51.93 -0.31 0.95 16 34 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 37 H 0.12 0.89 7.71 -51.93 -0.40 0.49 16 38 H 0.12 0.99 7.72 -51.93 -0.40 0.59 16 39 H 0.08 1.82 7.84 -51.93 -0.41 1.42 16 40 H 0.08 1.81 7.83 -51.93 -0.41 1.41 16 41 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 44 H 0.10 1.25 7.00 -51.93 -0.36 0.88 16 45 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 378.08 15.07 5.70 5.70 Total: -1.00 -38.58 378.08 -7.51 -46.09 By element: Atomic # 1 Polarization: 2.95 SS G_CDS: -6.38 Total: -3.44 kcal Atomic # 6 Polarization: 10.02 SS G_CDS: -2.07 Total: 7.96 kcal Atomic # 7 Polarization: -44.95 SS G_CDS: 0.00 Total: -44.95 kcal Atomic # 8 Polarization: -28.70 SS G_CDS: 0.27 Total: -28.43 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -38.58 -7.51 -46.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269204520.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.036 kcal (2) G-P(sol) polarization free energy of solvation -38.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds