Wall clock time and date at job start Tue Mar 31 2020 17:20:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47199 * 1 3 3 C 1.17401 * 179.97438 * 2 1 4 4 C 1.43197 * 179.97438 * 0.22497 * 3 2 1 5 5 O 1.21614 * 120.00283 * 305.79453 * 4 3 2 6 6 N 1.34778 * 119.99983 * 125.80199 * 4 3 2 7 7 C 1.46932 * 120.68023 * 359.97438 * 6 4 3 8 8 C 1.53192 * 108.88505 * 125.95526 * 7 6 4 9 9 C 1.53127 * 109.29298 * 55.11503 * 8 7 6 10 10 C 1.52441 * 109.60383 * 299.58015 * 9 8 7 11 11 C 1.53742 * 110.34695 * 182.19182 * 10 9 8 12 12 C 1.51453 * 103.35948 * 118.79161 * 11 10 9 13 13 O 1.21229 * 125.41414 * 179.97438 * 12 11 10 14 14 N 1.33960 * 109.17480 * 359.97438 * 12 11 10 15 15 C 1.46494 * 122.78809 * 179.97438 * 14 12 11 16 16 C 1.53008 * 109.47239 * 90.02486 * 15 14 12 17 17 C 1.50697 * 109.47197 * 180.02562 * 16 15 14 18 18 H 1.08004 * 120.00064 * 0.02562 * 17 16 15 19 19 C 1.37878 * 119.99982 * 179.97438 * 17 16 15 20 20 N 1.31514 * 119.99876 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 119.99989 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.46917 * 90.00401 * 21 19 17 23 23 H 1.48500 * 109.47072 * 210.00139 * 21 19 17 24 24 H 1.48496 * 109.47499 * 330.00159 * 21 19 17 25 25 C 1.34054 * 114.42865 * 0.02562 * 14 12 11 26 26 O 1.21230 * 125.50203 * 180.02562 * 25 14 12 27 27 C 1.47041 * 120.68775 * 180.02562 * 6 4 3 28 28 H 1.08994 * 109.47604 * 53.97437 * 1 2 3 29 29 H 1.09010 * 109.46934 * 173.97752 * 1 2 3 30 30 H 1.09003 * 109.47614 * 293.97190 * 1 2 3 31 31 H 1.08997 * 109.57587 * 6.12757 * 7 6 4 32 32 H 1.09007 * 109.56633 * 245.76877 * 7 6 4 33 33 H 1.09006 * 109.49773 * 295.16603 * 8 7 6 34 34 H 1.08998 * 109.52998 * 175.08158 * 8 7 6 35 35 H 1.09002 * 109.44451 * 59.61519 * 9 8 7 36 36 H 1.09003 * 109.44701 * 179.54909 * 9 8 7 37 37 H 1.09000 * 110.64752 * 237.25630 * 11 10 9 38 38 H 1.09002 * 110.64502 * 0.16309 * 11 10 9 39 39 H 1.09003 * 109.47692 * 210.02269 * 15 14 12 40 40 H 1.08999 * 109.47233 * 330.02671 * 15 14 12 41 41 H 1.08997 * 109.46886 * 300.00098 * 16 15 14 42 42 H 1.08999 * 109.46858 * 59.99954 * 16 15 14 43 43 H 0.96994 * 120.00163 * 179.97438 * 20 19 17 44 44 H 1.09000 * 109.57626 * 352.49684 * 27 6 4 45 45 H 1.09000 * 109.57300 * 112.75503 * 27 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4720 0.0000 0.0000 3 6 2.6460 0.0005 0.0000 4 6 4.0780 0.0005 0.0000 5 8 4.6861 -0.6155 0.8542 6 7 4.7519 0.6833 -0.9467 7 6 4.0323 1.4323 -1.9860 8 6 4.5311 2.8807 -1.9885 9 6 6.0527 2.8916 -2.1599 10 6 6.7030 2.1407 -1.0036 11 6 8.2346 2.1878 -1.1296 12 6 8.6675 2.9065 0.1313 13 8 9.8128 3.1593 0.4378 14 7 7.5836 3.2186 0.8541 15 6 7.6610 3.9219 2.1368 16 6 7.5928 5.4314 1.8958 17 6 7.6731 6.1549 3.2153 18 1 7.7640 5.5942 4.1339 19 6 7.6314 7.5326 3.2497 20 7 7.5211 8.2153 2.1311 21 14 7.7301 8.4294 4.8854 22 1 9.1514 8.7120 5.2099 23 1 6.9794 9.7075 4.7952 24 1 7.1381 7.5818 5.9513 25 6 6.4223 2.8329 0.3067 26 8 5.3237 3.0122 0.7869 27 6 6.2222 0.6932 -0.9613 28 1 -0.3634 0.6044 -0.8311 29 1 -0.3633 -1.0221 -0.1078 30 1 -0.3634 0.4175 0.9390 31 1 2.9632 1.4147 -1.7748 32 1 4.2215 0.9794 -2.9594 33 1 4.2678 3.3578 -1.0444 34 1 4.0682 3.4241 -2.8123 35 1 6.3154 2.4073 -3.1005 36 1 6.4095 3.9215 -2.1700 37 1 8.6490 1.1801 -1.1589 38 1 8.5302 2.7495 -2.0157 39 1 6.8273 3.6170 2.7693 40 1 8.6009 3.6749 2.6305 41 1 8.4265 5.7363 1.2634 42 1 6.6529 5.6783 1.4021 43 1 7.4914 9.1844 2.1553 44 1 6.5996 0.2086 -0.0609 45 1 6.5821 0.1601 -1.8413 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269204520.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:20:29 Heat of formation + Delta-G solvation = -77.245141 kcal Electronic energy + Delta-G solvation = -29262.915479 eV Core-core repulsion = 25245.849534 eV Total energy + Delta-G solvation = -4017.065945 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.37732 -41.08976 -39.72358 -38.38626 -37.08411 -36.05190 -35.30433 -34.64999 -33.22341 -31.93146 -30.11203 -28.84324 -27.16122 -26.90664 -25.51373 -23.75543 -23.48247 -22.97188 -21.78328 -19.95266 -19.04906 -18.84263 -17.87502 -17.79216 -17.52768 -17.39912 -16.59341 -16.39411 -16.05091 -15.90807 -15.54006 -15.37465 -15.03971 -14.95483 -14.88857 -14.65339 -14.50205 -14.45259 -14.28400 -14.02737 -13.77121 -13.56091 -13.47201 -12.97214 -12.93238 -12.76978 -12.25499 -12.19897 -12.07186 -12.05415 -11.90576 -11.65284 -11.58679 -11.31465 -11.26524 -11.06821 -10.91289 -10.68853 -10.63978 -9.78913 -8.32748 -6.46361 0.44619 0.50361 1.23707 1.33669 1.36854 1.47254 1.55347 1.72345 1.87394 2.33774 2.47093 2.93132 3.00746 3.08058 3.11621 3.35757 3.51026 3.82349 4.00065 4.03256 4.08534 4.23089 4.31200 4.39158 4.45554 4.51393 4.53252 4.57586 4.61116 4.72372 4.74637 4.77120 4.78401 4.83375 4.97852 5.02249 5.10767 5.23958 5.27693 5.35281 5.41391 5.62804 5.90088 6.00594 6.14249 6.25571 6.35010 6.64238 6.76063 6.89905 7.23398 8.80028 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.012178 B = 0.003501 C = 0.003061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2298.749398 B = 7995.658562 C = 9144.118191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C -0.051 4.051 3 C -0.289 4.289 4 C 0.630 3.370 5 O -0.581 6.581 6 N -0.593 5.593 7 C 0.113 3.887 8 C -0.148 4.148 9 C -0.097 4.097 10 C -0.099 4.099 11 C -0.125 4.125 12 C 0.513 3.487 13 O -0.523 6.523 14 N -0.582 5.582 15 C 0.114 3.886 16 C 0.034 3.966 17 C -0.553 4.553 18 H 0.063 0.937 19 C 0.004 3.996 20 N -0.928 5.928 21 Si 0.974 3.026 22 H -0.268 1.268 23 H -0.276 1.276 24 H -0.264 1.264 25 C 0.520 3.480 26 O -0.506 6.506 27 C 0.133 3.867 28 H 0.116 0.884 29 H 0.114 0.886 30 H 0.102 0.898 31 H 0.081 0.919 32 H 0.120 0.880 33 H 0.039 0.961 34 H 0.111 0.889 35 H 0.142 0.858 36 H 0.066 0.934 37 H 0.164 0.836 38 H 0.162 0.838 39 H 0.070 0.930 40 H 0.080 0.920 41 H -0.008 1.008 42 H -0.012 1.012 43 H 0.268 0.732 44 H 0.075 0.925 45 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.013 -18.082 -17.961 27.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.054 4.054 3 C -0.291 4.291 4 C 0.420 3.580 5 O -0.463 6.463 6 N -0.323 5.323 7 C -0.008 4.008 8 C -0.186 4.186 9 C -0.134 4.134 10 C -0.103 4.103 11 C -0.164 4.164 12 C 0.305 3.695 13 O -0.397 6.397 14 N -0.324 5.324 15 C -0.007 4.007 16 C -0.004 4.004 17 C -0.591 4.591 18 H 0.082 0.918 19 C -0.195 4.195 20 N -0.567 5.567 21 Si 0.797 3.203 22 H -0.193 1.193 23 H -0.201 1.201 24 H -0.188 1.188 25 C 0.311 3.689 26 O -0.379 6.379 27 C 0.011 3.989 28 H 0.134 0.866 29 H 0.132 0.868 30 H 0.120 0.880 31 H 0.100 0.900 32 H 0.138 0.862 33 H 0.058 0.942 34 H 0.129 0.871 35 H 0.160 0.840 36 H 0.084 0.916 37 H 0.181 0.819 38 H 0.180 0.820 39 H 0.088 0.912 40 H 0.098 0.902 41 H 0.011 0.989 42 H 0.007 0.993 43 H 0.076 0.924 44 H 0.093 0.907 45 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -10.678 -17.981 -17.159 27.051 hybrid contribution 0.207 1.226 1.728 2.129 sum -10.471 -16.754 -15.431 25.069 Atomic orbital electron populations 1.19517 0.79925 1.05961 1.05680 1.23745 0.94855 0.92721 0.94045 1.20640 0.92860 1.08155 1.07490 1.15068 0.83694 0.78703 0.80502 1.90789 1.69901 1.46624 1.38946 1.47932 1.07138 1.48671 1.28580 1.22009 0.96646 0.90950 0.91243 1.22089 0.96303 0.96937 1.03277 1.21572 0.94640 1.00522 0.96702 1.21637 0.97554 0.98102 0.93022 1.22737 0.91874 1.05987 0.95765 1.21874 0.83459 0.77254 0.86948 1.90738 1.20450 1.53979 1.74544 1.47282 1.10631 1.51832 1.22630 1.21694 1.02171 0.93567 0.83264 1.19062 0.94624 0.89911 0.96796 1.21453 1.51848 0.92510 0.93266 0.91837 1.26023 0.93957 0.98444 1.01048 1.70091 1.50276 1.07539 1.28843 0.85318 0.78728 0.77741 0.78497 1.19323 1.20079 1.18792 1.21461 0.82718 0.77004 0.87765 1.90686 1.25199 1.54484 1.67489 1.21740 0.78645 0.92183 1.06306 0.86581 0.86765 0.87994 0.90034 0.86205 0.94200 0.87077 0.84044 0.91554 0.81890 0.82032 0.91190 0.90205 0.98938 0.99346 0.92370 0.90655 0.83202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.44 10.32 70.18 0.72 0.28 16 2 C -0.05 -1.02 14.08 31.12 0.44 -0.58 16 3 C -0.29 -7.83 11.58 30.01 0.35 -7.49 16 4 C 0.63 19.61 7.55 85.49 0.65 20.26 16 5 O -0.58 -22.82 16.51 -4.07 -0.07 -22.89 16 6 N -0.59 -13.42 2.53 -828.71 -2.10 -15.52 16 7 C 0.11 1.69 6.31 86.36 0.54 2.23 16 8 C -0.15 -2.61 5.81 30.70 0.18 -2.43 16 9 C -0.10 -1.45 4.52 30.45 0.14 -1.31 16 10 C -0.10 -2.06 0.69 -52.96 -0.04 -2.10 16 11 C -0.12 -2.15 6.30 30.34 0.19 -1.96 16 12 C 0.51 17.34 8.09 88.02 0.71 18.05 16 13 O -0.52 -21.64 17.48 -2.87 -0.05 -21.69 16 14 N -0.58 -23.20 2.56 -756.74 -1.94 -25.14 16 15 C 0.11 5.54 5.50 86.38 0.48 6.02 16 16 C 0.03 1.96 5.30 29.85 0.16 2.12 16 17 C -0.55 -33.67 9.11 25.60 0.23 -33.43 16 18 H 0.06 3.71 7.74 -2.91 -0.02 3.68 16 19 C 0.00 0.24 5.46 84.65 0.46 0.70 16 20 N -0.93 -58.39 13.29 21.45 0.28 -58.11 16 21 Si 0.97 46.10 29.54 68.60 2.03 48.13 16 22 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 23 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 24 H -0.26 -12.03 7.11 99.48 0.71 -11.32 16 25 C 0.52 18.73 6.49 87.81 0.57 19.30 16 26 O -0.51 -22.16 14.97 -2.88 -0.04 -22.21 16 27 C 0.13 2.47 4.94 86.14 0.43 2.89 16 28 H 0.12 0.41 8.14 -2.39 -0.02 0.39 16 29 H 0.11 0.45 8.14 -2.38 -0.02 0.43 16 30 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.08 1.30 6.32 -2.39 -0.02 1.29 16 32 H 0.12 0.77 8.14 -2.38 -0.02 0.75 16 33 H 0.04 1.14 5.96 -2.38 -0.01 1.13 16 34 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.14 0.63 8.14 -2.39 -0.02 0.61 16 36 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.16 1.54 7.71 -2.39 -0.02 1.52 16 38 H 0.16 1.72 7.72 -2.39 -0.02 1.70 16 39 H 0.07 3.47 7.84 -2.39 -0.02 3.45 16 40 H 0.08 3.82 7.83 -2.39 -0.02 3.80 16 41 H -0.01 -0.49 8.14 -2.39 -0.02 -0.50 16 42 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 43 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 44 H 0.07 1.84 7.00 -2.39 -0.02 1.82 16 45 H 0.15 1.11 8.14 -2.39 -0.02 1.10 16 Total: -1.00 -96.39 378.08 5.34 -91.05 By element: Atomic # 1 Polarization: 2.81 SS G_CDS: 1.01 Total: 3.82 kcal Atomic # 6 Polarization: 16.34 SS G_CDS: 6.21 Total: 22.55 kcal Atomic # 7 Polarization: -95.01 SS G_CDS: -3.75 Total: -98.76 kcal Atomic # 8 Polarization: -66.63 SS G_CDS: -0.16 Total: -66.79 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 2.03 Total: 48.13 kcal Total: -96.39 5.34 -91.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269204520.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.807 kcal (2) G-P(sol) polarization free energy of solvation -96.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds