Wall clock time and date at job start Tue Mar 31 2020 17:20:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47199 * 1 3 3 C 1.17394 * 179.97438 * 2 1 4 4 C 1.43205 * 179.97438 * 54.10608 * 3 2 1 5 5 O 1.21620 * 119.99773 * 358.25743 * 4 3 2 6 6 N 1.34767 * 120.00275 * 178.25738 * 4 3 2 7 7 C 1.46936 * 120.67713 * 0.02562 * 6 4 3 8 8 C 1.53199 * 108.84735 * 234.08927 * 7 6 4 9 9 C 1.53127 * 109.28839 * 304.82941 * 8 7 6 10 10 C 1.52428 * 109.67053 * 60.43414 * 9 8 7 11 11 C 1.53768 * 110.31048 * 177.95235 * 10 9 8 12 12 C 1.51439 * 103.36477 * 241.20881 * 11 10 9 13 13 O 1.21228 * 125.41772 * 180.02562 * 12 11 10 14 14 N 1.33960 * 109.17468 * 0.02562 * 12 11 10 15 15 C 1.46496 * 122.78891 * 180.02562 * 14 12 11 16 16 C 1.53002 * 109.47421 * 90.02087 * 15 14 12 17 17 C 1.50706 * 109.46925 * 180.02562 * 16 15 14 18 18 H 1.07999 * 120.00196 * 0.02562 * 17 16 15 19 19 C 1.37879 * 119.99394 * 180.02562 * 17 16 15 20 20 N 1.31514 * 119.99350 * 180.02562 * 19 17 16 21 21 Si 1.86789 * 120.00458 * 359.97438 * 19 17 16 22 22 H 1.48506 * 109.47200 * 90.00092 * 21 19 17 23 23 H 1.48505 * 109.47499 * 210.00153 * 21 19 17 24 24 H 1.48500 * 109.47262 * 330.00415 * 21 19 17 25 25 C 1.34059 * 114.42525 * 0.26650 * 14 12 11 26 26 O 1.21234 * 125.49227 * 179.73476 * 25 14 12 27 27 C 1.47032 * 120.68565 * 179.97438 * 6 4 3 28 28 H 1.09000 * 109.47428 * 307.63169 * 1 2 3 29 29 H 1.08995 * 109.47358 * 67.64012 * 1 2 3 30 30 H 1.09002 * 109.46850 * 187.63828 * 1 2 3 31 31 H 1.09000 * 109.57482 * 353.89887 * 7 6 4 32 32 H 1.09003 * 109.57310 * 114.28438 * 7 6 4 33 33 H 1.09008 * 109.49643 * 64.76839 * 8 7 6 34 34 H 1.08994 * 109.50451 * 184.87898 * 8 7 6 35 35 H 1.08999 * 109.43410 * 300.37138 * 9 8 7 36 36 H 1.09001 * 109.43392 * 180.49564 * 9 8 7 37 37 H 1.09005 * 110.63999 * 122.74112 * 11 10 9 38 38 H 1.08996 * 110.64288 * 359.68089 * 11 10 9 39 39 H 1.09004 * 109.46875 * 330.02290 * 15 14 12 40 40 H 1.09004 * 109.47522 * 210.02438 * 15 14 12 41 41 H 1.09000 * 109.46497 * 60.00401 * 16 15 14 42 42 H 1.09000 * 109.47312 * 300.00180 * 16 15 14 43 43 H 0.97005 * 119.99656 * 179.97438 * 20 19 17 44 44 H 1.09002 * 109.56524 * 7.53003 * 27 6 4 45 45 H 1.08991 * 109.57726 * 247.15521 * 27 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4720 0.0000 0.0000 3 6 2.6459 0.0005 0.0000 4 6 4.0780 0.0008 -0.0005 5 8 4.6862 -1.0519 0.0313 6 7 4.7516 1.1675 -0.0363 7 6 4.0319 2.4479 -0.0744 8 6 4.5299 3.2601 -1.2741 9 6 6.0515 3.4090 -1.1875 10 6 6.7040 2.0317 -1.2118 11 6 8.2354 2.1659 -1.1770 12 6 8.6727 1.5251 -2.4776 13 8 9.8191 1.4154 -2.8562 14 7 7.5913 1.0987 -3.1434 15 6 7.6731 0.4302 -4.4443 16 6 7.7970 -1.0803 -4.2348 17 6 7.8818 -1.7679 -5.5732 18 1 7.8508 -1.1857 -6.4823 19 6 7.9988 -3.1402 -5.6370 20 7 8.0733 -3.7401 -6.8049 21 14 8.0531 -4.1471 -4.0646 22 1 6.6726 -4.5317 -3.6752 23 1 8.8635 -5.3713 -4.2884 24 1 8.6663 -3.3389 -2.9802 25 6 6.4276 1.3389 -2.5226 26 8 5.3303 1.0437 -2.9451 27 6 6.2219 1.1853 -0.0368 28 1 -0.3634 0.6275 0.8138 29 1 -0.3634 0.3909 -0.9503 30 1 -0.3633 -1.0186 0.1366 31 1 2.9626 2.2628 -0.1772 32 1 4.2219 3.0012 0.8454 33 1 4.2668 2.7438 -2.1974 34 1 4.0665 4.2465 -1.2634 35 1 6.3138 3.9184 -0.2603 36 1 6.4074 3.9941 -2.0355 37 1 8.6491 1.6267 -0.3248 38 1 8.5286 3.2153 -1.1481 39 1 8.5460 0.7947 -4.9858 40 1 6.7727 0.6444 -5.0202 41 1 6.9240 -1.4448 -3.6933 42 1 8.6973 -1.2946 -3.6590 43 1 8.1561 -4.7056 -6.8498 44 1 6.5992 0.1679 -0.1402 45 1 6.5822 1.6171 0.8968 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269204521.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:20:35 Heat of formation + Delta-G solvation = -45.233724 kcal Electronic energy + Delta-G solvation = -29536.591465 eV Core-core repulsion = 25520.913639 eV Total energy + Delta-G solvation = -4015.677826 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.24930 -40.04686 -38.45052 -37.33240 -35.69846 -34.76749 -34.22937 -32.96558 -32.27561 -30.56976 -29.36204 -27.94527 -26.15948 -25.51654 -24.28024 -22.70004 -22.01365 -21.60247 -20.44507 -18.82707 -18.11001 -17.28258 -16.73882 -16.42535 -16.26031 -16.16019 -15.47927 -15.22360 -14.94757 -14.42187 -14.36920 -14.22465 -14.06917 -14.03060 -13.85387 -13.78337 -13.59022 -13.22648 -13.20003 -12.83732 -12.77150 -12.63234 -12.14865 -11.73806 -11.47857 -11.37158 -11.13785 -11.00552 -10.79479 -10.68146 -10.49009 -10.25415 -10.17113 -10.11643 -9.76611 -9.69788 -9.28561 -9.09681 -8.92053 -8.52906 -6.04730 -4.04289 1.44805 1.67663 2.08462 2.70056 2.78844 2.93851 3.37503 3.43061 3.43532 3.49597 3.80661 3.90685 4.07869 4.19077 4.27909 4.48398 4.62669 4.64666 4.71246 4.96173 5.04878 5.12636 5.14575 5.15570 5.18908 5.24795 5.29825 5.33604 5.38387 5.40299 5.45349 5.58635 5.68480 5.81365 5.83582 6.04811 6.12898 6.15214 6.47740 7.01210 7.04611 7.09511 7.17078 7.37807 7.54883 7.70653 7.92942 8.04316 8.47623 8.96459 9.56988 11.08004 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.010130 B = 0.004570 C = 0.003560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2763.380213 B = 6125.607921 C = 7862.200420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 C -0.089 4.089 3 C -0.218 4.218 4 C 0.639 3.361 5 O -0.516 6.516 6 N -0.599 5.599 7 C 0.113 3.887 8 C -0.148 4.148 9 C -0.096 4.096 10 C -0.116 4.116 11 C -0.149 4.149 12 C 0.523 3.477 13 O -0.478 6.478 14 N -0.569 5.569 15 C 0.111 3.889 16 C -0.022 4.022 17 C -0.521 4.521 18 H 0.076 0.924 19 C 0.074 3.926 20 N -0.899 5.899 21 Si 0.877 3.123 22 H -0.275 1.275 23 H -0.285 1.285 24 H -0.266 1.266 25 C 0.534 3.466 26 O -0.462 6.462 27 C 0.136 3.864 28 H 0.090 0.910 29 H 0.092 0.908 30 H 0.089 0.911 31 H 0.086 0.914 32 H 0.073 0.927 33 H 0.090 0.910 34 H 0.081 0.919 35 H 0.084 0.916 36 H 0.075 0.925 37 H 0.122 0.878 38 H 0.123 0.877 39 H 0.088 0.912 40 H 0.086 0.914 41 H 0.017 0.983 42 H 0.021 0.979 43 H 0.264 0.736 44 H 0.102 0.898 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.575 19.364 19.338 29.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.091 4.091 3 C -0.221 4.221 4 C 0.428 3.572 5 O -0.393 6.393 6 N -0.332 5.332 7 C -0.009 4.009 8 C -0.186 4.186 9 C -0.134 4.134 10 C -0.121 4.121 11 C -0.189 4.189 12 C 0.311 3.689 13 O -0.349 6.349 14 N -0.311 5.311 15 C -0.008 4.008 16 C -0.060 4.060 17 C -0.559 4.559 18 H 0.094 0.906 19 C -0.128 4.128 20 N -0.537 5.537 21 Si 0.704 3.296 22 H -0.200 1.200 23 H -0.211 1.211 24 H -0.191 1.191 25 C 0.321 3.679 26 O -0.332 6.332 27 C 0.013 3.987 28 H 0.108 0.892 29 H 0.111 0.889 30 H 0.108 0.892 31 H 0.104 0.896 32 H 0.091 0.909 33 H 0.109 0.891 34 H 0.100 0.900 35 H 0.103 0.897 36 H 0.094 0.906 37 H 0.140 0.860 38 H 0.141 0.859 39 H 0.106 0.894 40 H 0.105 0.895 41 H 0.036 0.964 42 H 0.040 0.960 43 H 0.074 0.926 44 H 0.121 0.879 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -11.196 18.367 18.779 28.554 hybrid contribution 0.054 -0.713 0.548 0.901 sum -11.142 17.654 19.327 28.449 Atomic orbital electron populations 1.19112 0.83493 1.04101 1.03956 1.22664 0.93815 0.98467 0.94175 1.20499 0.92365 1.03364 1.05870 1.14696 0.82824 0.83484 0.76188 1.90896 1.68588 1.30759 1.49015 1.47721 1.06293 1.05913 1.73267 1.21728 0.97122 0.83559 0.98517 1.22111 0.95242 1.00835 1.00442 1.21388 0.95593 0.92748 1.03668 1.21555 0.96337 0.98725 0.95440 1.22567 0.93377 1.04860 0.98081 1.20671 0.84694 0.77290 0.86222 1.90779 1.18715 1.53877 1.71556 1.47086 1.08643 1.52644 1.22751 1.22037 1.03518 0.95257 0.80014 1.19853 0.96999 0.90149 0.98995 1.20849 1.51377 0.92262 0.91451 0.90631 1.24919 0.94154 0.97733 0.96029 1.69899 1.50220 1.09804 1.23788 0.86817 0.78682 0.79839 0.84273 1.20014 1.21094 1.19105 1.20248 0.83959 0.77842 0.85829 1.90721 1.24009 1.49017 1.69479 1.21459 0.79327 1.01957 0.95917 0.89187 0.88937 0.89228 0.89572 0.90873 0.89148 0.90004 0.89746 0.90597 0.86035 0.85895 0.89376 0.89532 0.96442 0.96047 0.92577 0.87937 0.88995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.29 10.32 34.37 0.35 0.07 16 2 C -0.09 -0.96 14.08 -37.12 -0.52 -1.48 16 3 C -0.22 -3.01 11.57 -38.83 -0.45 -3.46 16 4 C 0.64 10.11 7.55 -14.34 -0.11 10.00 16 5 O -0.52 -10.38 16.51 5.26 0.09 -10.30 16 6 N -0.60 -7.19 2.56 -175.89 -0.45 -7.64 16 7 C 0.11 0.92 6.31 -3.70 -0.02 0.90 16 8 C -0.15 -1.19 5.82 -26.56 -0.15 -1.34 16 9 C -0.10 -0.70 4.50 -26.96 -0.12 -0.82 16 10 C -0.12 -1.23 0.69 -155.69 -0.11 -1.34 16 11 C -0.15 -1.40 6.30 -27.12 -0.17 -1.57 16 12 C 0.52 8.24 8.09 -10.99 -0.09 8.15 16 13 O -0.48 -9.17 17.48 5.60 0.10 -9.08 16 14 N -0.57 -10.14 2.56 -115.42 -0.30 -10.44 16 15 C 0.11 2.38 5.50 -4.04 -0.02 2.36 16 16 C -0.02 -0.57 4.37 -27.88 -0.12 -0.69 16 17 C -0.52 -15.60 9.66 -34.44 -0.33 -15.93 16 18 H 0.08 2.36 7.99 -52.49 -0.42 1.94 16 19 C 0.07 2.26 5.47 -17.82 -0.10 2.16 16 20 N -0.90 -28.65 13.96 55.43 0.77 -27.88 16 21 Si 0.88 23.55 27.47 -169.99 -4.67 18.88 16 22 H -0.27 -7.38 7.11 56.52 0.40 -6.98 16 23 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 24 H -0.27 -7.03 6.54 56.52 0.37 -6.66 16 25 C 0.53 8.65 6.50 -11.25 -0.07 8.58 16 26 O -0.46 -8.88 14.98 5.60 0.08 -8.79 16 27 C 0.14 1.48 4.95 -3.94 -0.02 1.46 16 28 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.09 0.70 6.32 -51.93 -0.33 0.37 16 32 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.09 1.05 5.96 -51.92 -0.31 0.74 16 34 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 35 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 36 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.12 0.91 7.71 -51.93 -0.40 0.51 16 38 H 0.12 0.76 7.72 -51.93 -0.40 0.36 16 39 H 0.09 1.87 7.83 -51.93 -0.41 1.46 16 40 H 0.09 1.85 7.83 -51.93 -0.41 1.44 16 41 H 0.02 0.47 7.57 -51.93 -0.39 0.08 16 42 H 0.02 0.57 7.20 -51.93 -0.37 0.20 16 43 H 0.26 7.89 8.31 -40.82 -0.34 7.55 16 44 H 0.10 1.42 7.00 -51.93 -0.36 1.05 16 45 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 LS Contribution 374.52 15.07 5.64 5.64 Total: -1.00 -40.21 374.52 -7.14 -47.35 By element: Atomic # 1 Polarization: 1.57 SS G_CDS: -6.35 Total: -4.78 kcal Atomic # 6 Polarization: 9.10 SS G_CDS: -2.06 Total: 7.04 kcal Atomic # 7 Polarization: -45.98 SS G_CDS: 0.03 Total: -45.96 kcal Atomic # 8 Polarization: -28.44 SS G_CDS: 0.27 Total: -28.17 kcal Atomic # 14 Polarization: 23.55 SS G_CDS: -4.67 Total: 18.88 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -40.21 -7.14 -47.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269204521.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.113 kcal (2) G-P(sol) polarization free energy of solvation -40.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds