Wall clock time and date at job start Tue Mar 31 2020 17:20:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47199 * 1 3 3 C 1.17394 * 179.97438 * 2 1 4 4 C 1.43205 * 179.97438 * 54.10608 * 3 2 1 5 5 O 1.21620 * 119.99773 * 358.25743 * 4 3 2 6 6 N 1.34767 * 120.00275 * 178.25738 * 4 3 2 7 7 C 1.46936 * 120.67713 * 0.02562 * 6 4 3 8 8 C 1.53199 * 108.84735 * 234.08927 * 7 6 4 9 9 C 1.53127 * 109.28839 * 304.82941 * 8 7 6 10 10 C 1.52428 * 109.67053 * 60.43414 * 9 8 7 11 11 C 1.53768 * 110.31048 * 177.95235 * 10 9 8 12 12 C 1.51439 * 103.36477 * 241.20881 * 11 10 9 13 13 O 1.21228 * 125.41772 * 180.02562 * 12 11 10 14 14 N 1.33960 * 109.17468 * 0.02562 * 12 11 10 15 15 C 1.46496 * 122.78891 * 180.02562 * 14 12 11 16 16 C 1.53002 * 109.47421 * 90.02087 * 15 14 12 17 17 C 1.50706 * 109.46925 * 180.02562 * 16 15 14 18 18 H 1.07999 * 120.00196 * 0.02562 * 17 16 15 19 19 C 1.37879 * 119.99394 * 180.02562 * 17 16 15 20 20 N 1.31514 * 119.99350 * 180.02562 * 19 17 16 21 21 Si 1.86789 * 120.00458 * 359.97438 * 19 17 16 22 22 H 1.48506 * 109.47200 * 90.00092 * 21 19 17 23 23 H 1.48505 * 109.47499 * 210.00153 * 21 19 17 24 24 H 1.48500 * 109.47262 * 330.00415 * 21 19 17 25 25 C 1.34059 * 114.42525 * 0.26650 * 14 12 11 26 26 O 1.21234 * 125.49227 * 179.73476 * 25 14 12 27 27 C 1.47032 * 120.68565 * 179.97438 * 6 4 3 28 28 H 1.09000 * 109.47428 * 307.63169 * 1 2 3 29 29 H 1.08995 * 109.47358 * 67.64012 * 1 2 3 30 30 H 1.09002 * 109.46850 * 187.63828 * 1 2 3 31 31 H 1.09000 * 109.57482 * 353.89887 * 7 6 4 32 32 H 1.09003 * 109.57310 * 114.28438 * 7 6 4 33 33 H 1.09008 * 109.49643 * 64.76839 * 8 7 6 34 34 H 1.08994 * 109.50451 * 184.87898 * 8 7 6 35 35 H 1.08999 * 109.43410 * 300.37138 * 9 8 7 36 36 H 1.09001 * 109.43392 * 180.49564 * 9 8 7 37 37 H 1.09005 * 110.63999 * 122.74112 * 11 10 9 38 38 H 1.08996 * 110.64288 * 359.68089 * 11 10 9 39 39 H 1.09004 * 109.46875 * 330.02290 * 15 14 12 40 40 H 1.09004 * 109.47522 * 210.02438 * 15 14 12 41 41 H 1.09000 * 109.46497 * 60.00401 * 16 15 14 42 42 H 1.09000 * 109.47312 * 300.00180 * 16 15 14 43 43 H 0.97005 * 119.99656 * 179.97438 * 20 19 17 44 44 H 1.09002 * 109.56524 * 7.53003 * 27 6 4 45 45 H 1.08991 * 109.57726 * 247.15521 * 27 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4720 0.0000 0.0000 3 6 2.6459 0.0005 0.0000 4 6 4.0780 0.0008 -0.0005 5 8 4.6862 -1.0519 0.0313 6 7 4.7516 1.1675 -0.0363 7 6 4.0319 2.4479 -0.0744 8 6 4.5299 3.2601 -1.2741 9 6 6.0515 3.4090 -1.1875 10 6 6.7040 2.0317 -1.2118 11 6 8.2354 2.1659 -1.1770 12 6 8.6727 1.5251 -2.4776 13 8 9.8191 1.4154 -2.8562 14 7 7.5913 1.0987 -3.1434 15 6 7.6731 0.4302 -4.4443 16 6 7.7970 -1.0803 -4.2348 17 6 7.8818 -1.7679 -5.5732 18 1 7.8508 -1.1857 -6.4823 19 6 7.9988 -3.1402 -5.6370 20 7 8.0733 -3.7401 -6.8049 21 14 8.0531 -4.1471 -4.0646 22 1 6.6726 -4.5317 -3.6752 23 1 8.8635 -5.3713 -4.2884 24 1 8.6663 -3.3389 -2.9802 25 6 6.4276 1.3389 -2.5226 26 8 5.3303 1.0437 -2.9451 27 6 6.2219 1.1853 -0.0368 28 1 -0.3634 0.6275 0.8138 29 1 -0.3634 0.3909 -0.9503 30 1 -0.3633 -1.0186 0.1366 31 1 2.9626 2.2628 -0.1772 32 1 4.2219 3.0012 0.8454 33 1 4.2668 2.7438 -2.1974 34 1 4.0665 4.2465 -1.2634 35 1 6.3138 3.9184 -0.2603 36 1 6.4074 3.9941 -2.0355 37 1 8.6491 1.6267 -0.3248 38 1 8.5286 3.2153 -1.1481 39 1 8.5460 0.7947 -4.9858 40 1 6.7727 0.6444 -5.0202 41 1 6.9240 -1.4448 -3.6933 42 1 8.6973 -1.2946 -3.6590 43 1 8.1561 -4.7056 -6.8498 44 1 6.5992 0.1679 -0.1402 45 1 6.5822 1.6171 0.8968 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269204521.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:20:34 Heat of formation + Delta-G solvation = -74.678442 kcal Electronic energy + Delta-G solvation = -29537.868284 eV Core-core repulsion = 25520.913639 eV Total energy + Delta-G solvation = -4016.954645 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -43.39649 -41.11198 -39.74502 -38.40792 -37.11307 -36.07922 -35.31976 -34.68044 -33.26743 -32.27960 -30.17163 -28.92597 -27.27213 -26.91724 -25.48584 -23.57697 -23.34318 -22.98232 -21.79075 -20.00167 -19.32096 -18.95548 -17.99010 -17.76262 -17.56644 -17.38939 -16.52800 -16.40594 -16.10103 -15.91032 -15.53081 -15.34844 -15.21983 -15.05622 -14.91068 -14.77862 -14.64190 -14.49156 -14.35922 -14.07662 -13.77832 -13.63312 -13.54492 -13.14022 -12.91100 -12.80509 -12.28510 -12.14247 -12.06274 -12.00161 -11.88473 -11.71896 -11.64502 -11.33102 -11.29937 -11.08206 -10.95060 -10.91120 -10.72025 -9.80103 -8.46689 -6.51490 0.42925 0.48721 1.18912 1.21279 1.22195 1.31801 1.48693 1.71264 1.84781 2.19126 2.45030 2.87421 2.92514 3.07116 3.11079 3.35185 3.50353 3.82575 3.99710 4.02286 4.08992 4.18754 4.22178 4.30131 4.43812 4.50470 4.52233 4.54223 4.58449 4.72926 4.74506 4.75240 4.78041 4.88255 4.98085 5.02264 5.02995 5.05318 5.11528 5.35828 5.40602 5.44134 5.86624 6.05131 6.12953 6.23653 6.33256 6.52330 6.72476 6.89268 7.13252 8.69472 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.010130 B = 0.004570 C = 0.003560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2763.380213 B = 6125.607921 C = 7862.200420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 C -0.050 4.050 3 C -0.289 4.289 4 C 0.626 3.374 5 O -0.585 6.585 6 N -0.592 5.592 7 C 0.108 3.892 8 C -0.147 4.147 9 C -0.093 4.093 10 C -0.100 4.100 11 C -0.125 4.125 12 C 0.513 3.487 13 O -0.520 6.520 14 N -0.583 5.583 15 C 0.121 3.879 16 C -0.009 4.009 17 C -0.535 4.535 18 H 0.048 0.952 19 C 0.022 3.978 20 N -0.935 5.935 21 Si 0.937 3.063 22 H -0.275 1.275 23 H -0.264 1.264 24 H -0.262 1.262 25 C 0.520 3.480 26 O -0.504 6.504 27 C 0.128 3.872 28 H 0.123 0.877 29 H 0.109 0.891 30 H 0.102 0.898 31 H 0.080 0.920 32 H 0.118 0.882 33 H 0.044 0.956 34 H 0.116 0.884 35 H 0.139 0.861 36 H 0.082 0.918 37 H 0.152 0.848 38 H 0.174 0.826 39 H 0.085 0.915 40 H 0.077 0.923 41 H 0.000 1.000 42 H 0.014 0.986 43 H 0.271 0.729 44 H 0.063 0.937 45 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.453 22.619 23.240 34.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.052 4.052 3 C -0.292 4.292 4 C 0.416 3.584 5 O -0.467 6.467 6 N -0.323 5.323 7 C -0.012 4.012 8 C -0.185 4.185 9 C -0.130 4.130 10 C -0.104 4.104 11 C -0.164 4.164 12 C 0.305 3.695 13 O -0.394 6.394 14 N -0.325 5.325 15 C 0.000 4.000 16 C -0.047 4.047 17 C -0.573 4.573 18 H 0.066 0.934 19 C -0.177 4.177 20 N -0.574 5.574 21 Si 0.761 3.239 22 H -0.201 1.201 23 H -0.189 1.189 24 H -0.187 1.187 25 C 0.310 3.690 26 O -0.376 6.376 27 C 0.006 3.994 28 H 0.141 0.859 29 H 0.127 0.873 30 H 0.120 0.880 31 H 0.098 0.902 32 H 0.136 0.864 33 H 0.063 0.937 34 H 0.135 0.865 35 H 0.157 0.843 36 H 0.101 0.899 37 H 0.170 0.830 38 H 0.192 0.808 39 H 0.104 0.896 40 H 0.096 0.904 41 H 0.018 0.982 42 H 0.032 0.968 43 H 0.081 0.919 44 H 0.082 0.918 45 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -12.077 21.705 22.700 33.649 hybrid contribution 0.181 -1.676 -0.783 1.858 sum -11.896 20.029 21.918 31.985 Atomic orbital electron populations 1.19525 0.79770 1.05684 1.06036 1.23761 0.94842 0.95605 0.91016 1.20612 0.92787 1.06631 1.09193 1.15162 0.83836 0.83774 0.75621 1.90830 1.70005 1.33101 1.52768 1.47924 1.07007 1.06222 1.71117 1.22077 0.96644 0.81923 1.00601 1.22104 0.96453 1.01841 0.98079 1.21577 0.94311 0.90350 1.06763 1.21667 0.97684 0.99923 0.91103 1.22758 0.91723 1.07385 0.94484 1.21877 0.83456 0.76330 0.87826 1.90756 1.20157 1.55568 1.72928 1.47302 1.10676 1.52841 1.21704 1.21490 1.02926 0.92793 0.82790 1.19626 0.95530 0.93114 0.96416 1.21148 1.51216 0.92710 0.92273 0.93385 1.25740 0.93775 0.98932 0.99234 1.69998 1.51078 1.10584 1.25780 0.85872 0.78845 0.78908 0.80320 1.20107 1.18863 1.18663 1.21475 0.82698 0.77218 0.87591 1.90702 1.25420 1.50611 1.70882 1.21752 0.78841 1.00498 0.98318 0.85938 0.87262 0.87977 0.90153 0.86403 0.93737 0.86540 0.84342 0.89906 0.83007 0.80833 0.89630 0.90449 0.98200 0.96775 0.91935 0.91817 0.83276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.46 10.32 70.18 0.72 0.26 16 2 C -0.05 -1.03 14.08 31.13 0.44 -0.59 16 3 C -0.29 -8.24 11.57 30.02 0.35 -7.89 16 4 C 0.63 20.75 7.55 85.49 0.65 21.39 16 5 O -0.58 -25.42 16.51 -4.09 -0.07 -25.49 16 6 N -0.59 -13.58 2.56 -828.63 -2.12 -15.71 16 7 C 0.11 1.43 6.31 86.36 0.55 1.97 16 8 C -0.15 -1.87 5.82 30.70 0.18 -1.69 16 9 C -0.09 -0.86 4.50 30.45 0.14 -0.73 16 10 C -0.10 -1.81 0.69 -52.95 -0.04 -1.84 16 11 C -0.12 -1.79 6.30 30.34 0.19 -1.60 16 12 C 0.51 15.68 8.09 88.02 0.71 16.39 16 13 O -0.52 -19.89 17.48 -2.87 -0.05 -19.94 16 14 N -0.58 -21.29 2.56 -756.76 -1.94 -23.23 16 15 C 0.12 5.54 5.50 86.38 0.48 6.02 16 16 C -0.01 -0.48 4.37 29.85 0.13 -0.35 16 17 C -0.54 -33.79 9.66 25.60 0.25 -33.55 16 18 H 0.05 3.21 7.99 -2.91 -0.02 3.18 16 19 C 0.02 1.41 5.47 84.66 0.46 1.87 16 20 N -0.93 -61.46 13.96 21.45 0.30 -61.16 16 21 Si 0.94 50.03 27.47 68.60 1.88 51.91 16 22 H -0.28 -14.70 7.11 99.48 0.71 -13.99 16 23 H -0.26 -13.15 7.11 99.48 0.71 -12.44 16 24 H -0.26 -13.72 6.54 99.48 0.65 -13.07 16 25 C 0.52 17.08 6.50 87.80 0.57 17.65 16 26 O -0.50 -20.52 14.98 -2.89 -0.04 -20.57 16 27 C 0.13 2.47 4.95 86.16 0.43 2.90 16 28 H 0.12 0.32 8.14 -2.39 -0.02 0.30 16 29 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.08 1.16 6.32 -2.39 -0.02 1.15 16 32 H 0.12 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.04 1.01 5.96 -2.38 -0.01 1.00 16 34 H 0.12 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.14 -0.02 8.14 -2.39 -0.02 -0.04 16 36 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.15 1.44 7.71 -2.38 -0.02 1.43 16 38 H 0.17 0.90 7.72 -2.39 -0.02 0.88 16 39 H 0.09 3.88 7.83 -2.38 -0.02 3.86 16 40 H 0.08 3.60 7.83 -2.39 -0.02 3.58 16 41 H 0.00 -0.02 7.57 -2.39 -0.02 -0.04 16 42 H 0.01 0.78 7.20 -2.39 -0.02 0.76 16 43 H 0.27 16.53 8.31 -92.70 -0.77 15.76 16 44 H 0.06 1.78 7.00 -2.39 -0.02 1.76 16 45 H 0.15 1.21 8.14 -2.39 -0.02 1.19 16 Total: -1.00 -100.50 374.52 5.12 -95.39 By element: Atomic # 1 Polarization: -2.39 SS G_CDS: 0.96 Total: -1.43 kcal Atomic # 6 Polarization: 14.02 SS G_CDS: 6.20 Total: 20.22 kcal Atomic # 7 Polarization: -96.33 SS G_CDS: -3.76 Total: -100.09 kcal Atomic # 8 Polarization: -65.83 SS G_CDS: -0.16 Total: -65.99 kcal Atomic # 14 Polarization: 50.03 SS G_CDS: 1.88 Total: 51.91 kcal Total: -100.50 5.12 -95.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269204521.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.708 kcal (2) G-P(sol) polarization free energy of solvation -100.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds