Wall clock time and date at job start Tue Mar 31 2020 17:49:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 N 1.46496 * 109.47036 * 10.26080 * 3 2 1 5 5 C 1.33959 * 122.78734 * 269.70690 * 4 3 2 6 6 O 1.21227 * 125.41271 * 0.03098 * 5 4 3 7 7 C 1.51447 * 109.17594 * 179.90373 * 5 4 3 8 8 C 1.53734 * 103.35893 * 0.33226 * 7 5 4 9 9 C 1.52440 * 110.36137 * 118.58622 * 8 7 5 10 10 C 1.53143 * 109.61404 * 182.28830 * 9 8 7 11 11 C 1.53175 * 109.28972 * 299.55688 * 10 9 8 12 12 N 1.46939 * 108.89988 * 55.09448 * 11 10 9 13 13 C 1.34783 * 120.68326 * 125.96908 * 12 11 10 14 14 O 1.21276 * 119.99708 * 179.97438 * 13 12 11 15 15 C 1.50692 * 119.99924 * 359.97438 * 13 12 11 16 16 C 1.53005 * 109.47088 * 179.97438 * 15 13 12 17 17 C 1.50700 * 109.47140 * 179.97438 * 16 15 13 18 18 H 1.07997 * 120.00005 * 0.02562 * 17 16 15 19 19 C 1.37881 * 119.99786 * 179.97438 * 17 16 15 20 20 N 1.31510 * 120.00036 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99845 * 180.02562 * 19 17 16 22 22 H 1.48493 * 109.47392 * 60.00156 * 21 19 17 23 23 H 1.48498 * 109.47098 * 180.02562 * 21 19 17 24 24 H 1.48505 * 109.46976 * 299.99876 * 21 19 17 25 25 C 1.47036 * 118.62980 * 305.95098 * 12 11 10 26 26 C 1.34051 * 122.78466 * 90.00263 * 4 3 2 27 27 O 1.21225 * 125.50395 * 359.97438 * 26 4 3 28 28 H 4.40633 * 5.51415 * 179.97438 * 4 1 2 29 29 H 1.09001 * 109.47046 * 130.25833 * 3 2 1 30 30 H 1.08996 * 109.47366 * 250.26237 * 3 2 1 31 31 H 1.09002 * 110.80687 * 241.78066 * 7 5 4 32 32 H 1.09005 * 110.62124 * 118.78578 * 7 5 4 33 33 H 1.09003 * 109.44642 * 302.32424 * 9 8 7 34 34 H 1.08998 * 109.45484 * 62.23909 * 9 8 7 35 35 H 1.08997 * 109.50030 * 179.60953 * 10 9 8 36 36 H 1.09001 * 109.53307 * 59.52222 * 10 9 8 37 37 H 1.09002 * 109.56734 * 295.27312 * 11 10 9 38 38 H 1.08994 * 109.66414 * 174.98236 * 11 10 9 39 39 H 1.08998 * 109.47578 * 300.00058 * 15 13 12 40 40 H 1.09006 * 109.47520 * 60.00049 * 15 13 12 41 41 H 1.09003 * 109.47055 * 300.00032 * 16 15 13 42 42 H 1.08997 * 109.47009 * 59.99749 * 16 15 13 43 43 H 0.97003 * 120.00033 * 180.02562 * 20 19 17 44 44 H 1.09000 * 109.58610 * 292.92947 * 25 12 11 45 45 H 1.09003 * 109.58630 * 172.51581 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.3582 -0.2460 5 6 3.3825 -2.2298 0.7406 6 8 3.2373 -2.0110 1.9241 7 6 3.8697 -3.5331 0.1425 8 6 3.8668 -3.2531 -1.3691 9 6 5.2764 -3.3820 -1.9351 10 6 5.2634 -3.0443 -3.4288 11 6 4.3376 -4.0211 -4.1604 12 7 3.0103 -3.9807 -3.5311 13 6 1.9069 -3.7427 -4.2676 14 8 0.8176 -3.7126 -3.7355 15 6 2.0269 -3.5140 -5.7523 16 6 0.6375 -3.2694 -6.3445 17 6 0.7575 -3.0401 -7.8292 18 1 1.7277 -3.0666 -8.3029 19 6 -0.3714 -2.7976 -8.5827 20 7 -1.5528 -2.7658 -8.0058 21 14 -0.2227 -2.5140 -10.4231 22 1 0.3842 -3.7099 -11.0608 23 1 -1.5711 -2.2766 -10.9979 24 1 0.6372 -1.3294 -10.6735 25 6 2.9108 -4.2057 -2.0815 26 6 3.3771 -1.8308 -1.4769 27 8 3.2270 -1.2143 -2.5098 28 1 -1.0498 -0.0004 0.0001 29 1 3.0090 0.6649 -0.7843 30 1 3.0092 0.3479 0.9672 31 1 3.1879 -4.3486 0.3837 32 1 4.8777 -3.7614 0.4890 33 1 5.9413 -2.6936 -1.4134 34 1 5.6311 -4.4033 -1.7970 35 1 6.2732 -3.1303 -3.8301 36 1 4.9017 -2.0257 -3.5691 37 1 4.7437 -5.0302 -4.0913 38 1 4.2538 -3.7323 -5.2080 39 1 2.6587 -2.6451 -5.9362 40 1 2.4716 -4.3922 -6.2205 41 1 0.0060 -4.1387 -6.1607 42 1 0.1924 -2.3915 -5.8765 43 1 -2.3470 -2.5956 -8.5361 44 1 3.1832 -5.2359 -1.8521 45 1 1.8900 -4.0134 -1.7511 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269990400.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:49:00 Heat of formation + Delta-G solvation = -71.387269 kcal Electronic energy + Delta-G solvation = -29412.099132 eV Core-core repulsion = 25395.287203 eV Total energy + Delta-G solvation = -4016.811929 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 6.52 seconds Orbital eigenvalues (eV) -43.44138 -41.02140 -39.80438 -38.36158 -37.15443 -35.72516 -35.57106 -33.93141 -33.03041 -32.75390 -29.90394 -28.27103 -27.77697 -26.29885 -25.48270 -23.49485 -23.19436 -22.47884 -20.68479 -19.81067 -19.36083 -18.81533 -18.36398 -17.72733 -17.62589 -17.36719 -16.76743 -16.55877 -16.43853 -16.04183 -15.62572 -15.42829 -15.28783 -14.90968 -14.70741 -14.63202 -14.56073 -14.28492 -14.18745 -13.75425 -13.59631 -13.51230 -13.20449 -12.88798 -12.78356 -12.53581 -12.29432 -12.04953 -11.95284 -11.88536 -11.77819 -11.53081 -11.44707 -11.34559 -11.29989 -11.18122 -10.89868 -10.65392 -10.57865 -9.59664 -8.19207 -6.34035 0.40319 0.95579 1.40254 1.45731 1.53316 1.56871 1.61341 1.70950 1.97384 2.04749 2.42221 2.94894 3.06074 3.13314 3.22344 3.33143 3.50028 3.84977 3.91195 4.03577 4.09180 4.13077 4.18794 4.37391 4.38953 4.46555 4.50662 4.54942 4.60369 4.65530 4.78752 4.79186 4.81038 4.95390 4.99604 5.11275 5.18919 5.44951 5.47547 5.59015 5.62821 5.67316 5.82256 6.15489 6.21464 6.37487 6.39747 6.64308 6.83729 7.27465 7.36371 8.93559 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.015024 B = 0.003307 C = 0.002943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1863.180792 B = 8464.736238 C = 9510.442440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.254 4.254 3 C 0.208 3.792 4 N -0.579 5.579 5 C 0.527 3.473 6 O -0.511 6.511 7 C -0.130 4.130 8 C -0.100 4.100 9 C -0.091 4.091 10 C -0.145 4.145 11 C 0.100 3.900 12 N -0.608 5.608 13 C 0.515 3.485 14 O -0.595 6.595 15 C -0.114 4.114 16 C 0.046 3.954 17 C -0.544 4.544 18 H 0.076 0.924 19 C -0.007 4.007 20 N -0.939 5.939 21 Si 0.976 3.024 22 H -0.258 1.258 23 H -0.287 1.287 24 H -0.264 1.264 25 C 0.125 3.875 26 C 0.525 3.475 27 O -0.494 6.494 28 H 0.244 0.756 29 H 0.117 0.883 30 H 0.134 0.866 31 H 0.145 0.855 32 H 0.173 0.827 33 H 0.091 0.909 34 H 0.129 0.871 35 H 0.112 0.888 36 H 0.049 0.951 37 H 0.108 0.892 38 H 0.082 0.918 39 H 0.091 0.909 40 H 0.107 0.893 41 H -0.017 1.017 42 H -0.029 1.029 43 H 0.263 0.737 44 H 0.131 0.869 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.490 -3.138 18.249 28.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.255 4.255 3 C 0.088 3.912 4 N -0.322 5.322 5 C 0.319 3.681 6 O -0.385 6.385 7 C -0.169 4.169 8 C -0.104 4.104 9 C -0.129 4.129 10 C -0.183 4.183 11 C -0.021 4.021 12 N -0.341 5.341 13 C 0.305 3.695 14 O -0.475 6.475 15 C -0.153 4.153 16 C 0.009 3.991 17 C -0.582 4.582 18 H 0.094 0.906 19 C -0.205 4.205 20 N -0.579 5.579 21 Si 0.799 3.201 22 H -0.182 1.182 23 H -0.212 1.212 24 H -0.188 1.188 25 C 0.002 3.998 26 C 0.315 3.685 27 O -0.364 6.364 28 H 0.261 0.739 29 H 0.135 0.865 30 H 0.152 0.848 31 H 0.163 0.837 32 H 0.190 0.810 33 H 0.109 0.891 34 H 0.147 0.853 35 H 0.131 0.869 36 H 0.068 0.932 37 H 0.126 0.874 38 H 0.100 0.900 39 H 0.109 0.891 40 H 0.125 0.875 41 H 0.001 0.999 42 H -0.010 1.010 43 H 0.072 0.928 44 H 0.149 0.851 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 20.621 -2.624 18.556 27.865 hybrid contribution -1.509 0.988 -0.853 1.995 sum 19.112 -1.636 17.703 26.103 Atomic orbital electron populations 1.25866 0.97137 0.96067 0.99393 1.23731 0.95768 1.03904 1.02109 1.18626 0.83742 0.83045 1.05833 1.47119 1.59288 1.15524 1.10240 1.21561 0.74351 0.87437 0.84741 1.90766 1.50748 1.81021 1.15916 1.22736 1.09006 0.94762 0.90412 1.21617 1.00914 0.90162 0.97704 1.21554 0.89902 1.06418 0.94981 1.22085 1.01018 0.99347 0.95883 1.22085 0.80352 1.01851 0.97848 1.48148 1.07446 1.70685 1.07812 1.21255 0.83513 0.74173 0.90552 1.90622 1.29324 1.53165 1.74413 1.21585 1.00351 1.03567 0.89833 1.18648 0.91573 0.94123 0.94772 1.21670 0.94151 1.48907 0.93483 0.90568 1.26178 0.94765 0.94786 1.04735 1.70185 0.99093 1.50338 1.38236 0.85343 0.77300 0.79487 0.77933 1.18247 1.21244 1.18844 1.21594 0.98530 0.99973 0.79662 1.21345 0.74966 0.90428 0.81787 1.90780 1.48708 1.65241 1.31706 0.73916 0.86475 0.84802 0.83679 0.80968 0.89090 0.85275 0.86940 0.93245 0.87387 0.89977 0.89112 0.87514 0.99856 1.01028 0.92849 0.85112 0.92438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.59 19.25 74.32 1.43 -3.16 16 2 C -0.25 -7.29 13.68 31.13 0.43 -6.86 16 3 C 0.21 4.80 6.04 84.58 0.51 5.31 16 4 N -0.58 -13.16 2.52 -766.65 -1.93 -15.09 16 5 C 0.53 10.03 8.09 88.02 0.71 10.75 16 6 O -0.51 -12.57 17.48 -2.87 -0.05 -12.62 16 7 C -0.13 -1.17 6.30 30.33 0.19 -0.98 16 8 C -0.10 -1.50 0.69 -52.96 -0.04 -1.54 16 9 C -0.09 -0.72 4.52 30.46 0.14 -0.59 16 10 C -0.15 -2.00 5.81 30.70 0.18 -1.82 16 11 C 0.10 1.78 6.33 86.35 0.55 2.33 16 12 N -0.61 -16.74 2.52 -819.76 -2.07 -18.80 16 13 C 0.51 21.40 7.70 87.65 0.67 22.08 16 14 O -0.59 -31.05 15.41 -3.02 -0.05 -31.10 16 15 C -0.11 -4.94 3.99 29.85 0.12 -4.82 16 16 C 0.05 2.74 4.26 29.85 0.13 2.87 16 17 C -0.54 -32.16 9.11 25.60 0.23 -31.93 16 18 H 0.08 4.08 7.74 -2.91 -0.02 4.05 16 19 C -0.01 -0.44 5.46 84.66 0.46 0.03 16 20 N -0.94 -61.31 13.29 21.45 0.28 -61.03 16 21 Si 0.98 45.28 29.54 68.60 2.03 47.30 16 22 H -0.26 -11.14 7.11 99.48 0.71 -10.44 16 23 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 24 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 25 C 0.13 2.61 4.94 86.15 0.43 3.04 16 26 C 0.53 13.16 6.49 87.81 0.57 13.73 16 27 O -0.49 -16.91 14.96 -2.86 -0.04 -16.96 16 28 H 0.24 5.02 7.80 -4.43 -0.03 4.99 16 29 H 0.12 2.58 7.84 -2.39 -0.02 2.56 16 30 H 0.13 2.45 7.83 -2.39 -0.02 2.43 16 31 H 0.15 0.87 7.72 -2.39 -0.02 0.86 16 32 H 0.17 0.08 7.72 -2.38 -0.02 0.06 16 33 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 34 H 0.13 0.06 8.14 -2.39 -0.02 0.04 16 35 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.05 1.10 5.96 -2.39 -0.01 1.08 16 37 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.08 1.68 5.93 -2.39 -0.01 1.67 16 39 H 0.09 3.71 7.71 -2.39 -0.02 3.70 16 40 H 0.11 3.96 7.93 -2.38 -0.02 3.95 16 41 H -0.02 -1.12 8.10 -2.39 -0.02 -1.13 16 42 H -0.03 -1.95 8.10 -2.39 -0.02 -1.97 16 43 H 0.26 16.06 8.31 -92.71 -0.77 15.29 16 44 H 0.13 1.55 8.14 -2.39 -0.02 1.53 16 45 H 0.06 1.67 7.00 -2.39 -0.02 1.65 16 Total: -1.00 -96.38 376.07 5.88 -90.50 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: 1.00 Total: 9.37 kcal Atomic # 6 Polarization: 1.71 SS G_CDS: 6.71 Total: 8.42 kcal Atomic # 7 Polarization: -91.20 SS G_CDS: -3.72 Total: -94.92 kcal Atomic # 8 Polarization: -60.53 SS G_CDS: -0.14 Total: -60.67 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.30 kcal Total: -96.38 5.88 -90.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269990400.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.115 kcal (2) G-P(sol) polarization free energy of solvation -96.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.53 seconds