Wall clock time and date at job start Tue Mar 31 2020 17:49:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 N 1.46495 * 109.46763 * 218.60040 * 3 2 1 5 5 C 1.33958 * 122.78902 * 89.97816 * 4 3 2 6 6 O 1.21229 * 125.40953 * 0.07022 * 5 4 3 7 7 C 1.51451 * 109.18019 * 180.02562 * 5 4 3 8 8 C 1.53733 * 103.35820 * 359.97438 * 7 5 4 9 9 C 1.52449 * 110.36371 * 241.23302 * 8 7 5 10 10 C 1.53132 * 109.61210 * 177.70095 * 9 8 7 11 11 C 1.53186 * 109.29010 * 60.43802 * 10 9 8 12 12 N 1.46930 * 108.90307 * 304.90772 * 11 10 9 13 13 C 1.34776 * 120.68369 * 234.01274 * 12 11 10 14 14 O 1.21285 * 119.99942 * 180.02562 * 13 12 11 15 15 C 1.50703 * 120.00196 * 0.02562 * 13 12 11 16 16 C 1.52996 * 109.47259 * 179.97438 * 15 13 12 17 17 C 1.50699 * 109.47045 * 180.02562 * 16 15 13 18 18 H 1.07997 * 120.00307 * 359.97438 * 17 16 15 19 19 C 1.37881 * 119.99717 * 180.02562 * 17 16 15 20 20 N 1.31508 * 120.00129 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99659 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47246 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47139 * 119.99678 * 21 19 17 24 24 H 1.48501 * 109.46778 * 239.99602 * 21 19 17 25 25 C 1.47042 * 118.63261 * 54.04252 * 12 11 10 26 26 C 1.34052 * 122.78515 * 270.01816 * 4 3 2 27 27 O 1.21223 * 125.49974 * 359.97438 * 26 4 3 28 28 H 4.40634 * 5.51432 * 179.97438 * 4 1 2 29 29 H 1.08992 * 109.46847 * 98.60042 * 3 2 1 30 30 H 1.09002 * 109.47113 * 338.59917 * 3 2 1 31 31 H 1.09007 * 110.64126 * 241.53367 * 7 5 4 32 32 H 1.08993 * 110.64736 * 118.46723 * 7 5 4 33 33 H 1.09002 * 109.44625 * 57.65960 * 9 8 7 34 34 H 1.08997 * 109.42362 * 297.72975 * 9 8 7 35 35 H 1.08998 * 109.50197 * 300.49025 * 10 9 8 36 36 H 1.09001 * 109.50309 * 180.38262 * 10 9 8 37 37 H 1.08997 * 109.56638 * 64.73580 * 11 10 9 38 38 H 1.08998 * 109.56307 * 185.08430 * 11 10 9 39 39 H 1.09004 * 109.46965 * 299.99947 * 15 13 12 40 40 H 1.09007 * 109.46717 * 59.99573 * 15 13 12 41 41 H 1.09004 * 109.47221 * 299.99952 * 16 15 13 42 42 H 1.08999 * 109.47264 * 59.99932 * 16 15 13 43 43 H 0.97001 * 119.99796 * 180.02562 * 20 19 17 44 44 H 1.08998 * 109.58429 * 187.48730 * 25 12 11 45 45 H 1.09002 * 109.69722 * 67.13701 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1338 1.0803 0.8617 5 6 3.3753 0.9125 2.1686 6 8 3.2264 -0.1218 2.7833 7 6 3.8648 2.2198 2.7561 8 6 3.8630 3.1737 1.5505 9 6 5.2726 3.6859 1.2772 10 6 5.2607 4.5881 0.0399 11 6 4.3331 5.7808 0.2921 12 7 3.0059 5.2793 0.6738 13 6 1.9032 5.6762 0.0082 14 8 0.8136 5.2547 0.3341 15 6 2.0240 6.6437 -1.1409 16 6 0.6354 6.9265 -1.7176 17 6 0.7563 7.8935 -2.8671 18 1 1.7264 8.2693 -3.1570 19 6 -0.3718 8.2995 -3.5480 20 7 -1.5532 7.8424 -3.1947 21 14 -0.2219 9.4976 -4.9733 22 1 1.2054 9.8581 -5.1689 23 1 -0.7469 8.8644 -6.2096 24 1 -1.0050 10.7234 -4.6739 25 6 2.9054 4.3359 1.7972 26 6 3.3749 2.3185 0.4080 27 8 3.2253 2.6905 -0.7360 28 1 -1.0501 -0.0001 -0.0003 29 1 3.0093 0.1545 -1.0161 30 1 3.0098 -0.9560 0.3750 31 1 4.8728 2.1079 3.1556 32 1 3.1816 2.5740 3.5279 33 1 5.9385 2.8407 1.1037 34 1 5.6247 4.2548 2.1377 35 1 4.9006 4.0224 -0.8194 36 1 6.2705 4.9478 -0.1578 37 1 4.7374 6.3936 1.0978 38 1 4.2506 6.3774 -0.6163 39 1 2.4673 7.5746 -0.7870 40 1 2.6575 6.2109 -1.9152 41 1 0.1925 5.9955 -2.0716 42 1 0.0016 7.3591 -0.9435 43 1 -2.3468 8.1277 -3.6740 44 1 1.8848 3.9597 1.8681 45 1 3.1743 4.8400 2.7254 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269990401.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:49:15 Heat of formation + Delta-G solvation = -43.961575 kcal Electronic energy + Delta-G solvation = -29412.333121 eV Core-core repulsion = 25396.710459 eV Total energy + Delta-G solvation = -4015.622662 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 4.59 seconds Orbital eigenvalues (eV) -42.58825 -39.80524 -38.71624 -37.25635 -36.18124 -34.68961 -33.47057 -32.87452 -32.01856 -30.96771 -28.91285 -27.29402 -26.32176 -25.04949 -24.42518 -22.40751 -21.84908 -21.40552 -19.55608 -18.78007 -18.23528 -17.48865 -17.06088 -16.73615 -16.50419 -15.90737 -15.55698 -15.26328 -15.09777 -14.70259 -14.52832 -14.43887 -14.33662 -13.88622 -13.77983 -13.68977 -13.26403 -13.18558 -12.80561 -12.78787 -12.29918 -12.10446 -12.02860 -11.43600 -11.36689 -11.10411 -11.04019 -10.92545 -10.88260 -10.54033 -10.47629 -10.39961 -10.21902 -10.00061 -9.92265 -9.57887 -9.14720 -8.96614 -8.47513 -8.28891 -5.93234 -3.97240 1.28002 1.85787 2.42978 2.65717 2.96165 3.12325 3.26701 3.34316 3.41309 3.44696 3.67657 3.83442 4.00227 4.10934 4.24109 4.49452 4.58603 4.75429 4.81204 4.90841 4.94900 4.97786 5.12623 5.17240 5.27864 5.30555 5.41274 5.41862 5.43961 5.50237 5.62202 5.72253 5.73359 5.84401 6.14317 6.23942 6.28296 6.50908 6.65229 6.93276 7.05465 7.40490 7.53908 7.72626 7.78007 7.90532 8.10624 8.41749 8.75494 9.11307 9.66018 11.17860 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.015021 B = 0.003308 C = 0.002944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1863.581505 B = 8462.143407 C = 9508.039350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.228 4.228 3 C 0.216 3.784 4 N -0.574 5.574 5 C 0.531 3.469 6 O -0.483 6.483 7 C -0.148 4.148 8 C -0.110 4.110 9 C -0.096 4.096 10 C -0.148 4.148 11 C 0.112 3.888 12 N -0.621 5.621 13 C 0.521 3.479 14 O -0.534 6.534 15 C -0.126 4.126 16 C 0.037 3.963 17 C -0.524 4.524 18 H 0.056 0.944 19 C 0.058 3.942 20 N -0.890 5.890 21 Si 0.892 3.108 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.284 1.284 25 C 0.132 3.868 26 C 0.535 3.465 27 O -0.444 6.444 28 H 0.223 0.777 29 H 0.116 0.884 30 H 0.115 0.885 31 H 0.126 0.874 32 H 0.125 0.875 33 H 0.071 0.929 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.080 0.920 37 H 0.066 0.934 38 H 0.095 0.905 39 H 0.078 0.922 40 H 0.081 0.919 41 H 0.022 0.978 42 H 0.022 0.978 43 H 0.260 0.740 44 H 0.094 0.906 45 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.371 -12.986 12.881 25.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.229 4.229 3 C 0.096 3.904 4 N -0.318 5.318 5 C 0.320 3.680 6 O -0.354 6.354 7 C -0.188 4.188 8 C -0.114 4.114 9 C -0.134 4.134 10 C -0.186 4.186 11 C -0.011 4.011 12 N -0.357 5.357 13 C 0.311 3.689 14 O -0.409 6.409 15 C -0.166 4.166 16 C 0.000 4.000 17 C -0.563 4.563 18 H 0.074 0.926 19 C -0.144 4.144 20 N -0.529 5.529 21 Si 0.720 3.280 22 H -0.197 1.197 23 H -0.210 1.210 24 H -0.210 1.210 25 C 0.008 3.992 26 C 0.323 3.677 27 O -0.311 6.311 28 H 0.240 0.760 29 H 0.134 0.866 30 H 0.133 0.867 31 H 0.144 0.856 32 H 0.143 0.857 33 H 0.089 0.911 34 H 0.104 0.896 35 H 0.104 0.896 36 H 0.098 0.902 37 H 0.084 0.916 38 H 0.113 0.887 39 H 0.097 0.903 40 H 0.099 0.901 41 H 0.041 0.959 42 H 0.041 0.959 43 H 0.069 0.931 44 H 0.113 0.887 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 16.416 -13.544 12.653 24.759 hybrid contribution -0.239 0.481 -0.844 1.000 sum 16.177 -13.063 11.809 23.912 Atomic orbital electron populations 1.25098 0.96037 0.97431 0.98332 1.22958 0.94474 1.02977 1.02470 1.18430 0.84865 0.90732 0.96392 1.46930 1.59775 1.13211 1.11856 1.20860 0.75283 0.90688 0.81154 1.90775 1.49405 1.31362 1.63896 1.22590 1.06076 0.91431 0.98663 1.21563 1.00088 0.96572 0.93199 1.21406 0.91779 1.00106 1.00064 1.22111 1.00255 0.97498 0.98741 1.21669 0.82181 0.95654 1.01645 1.48211 1.07592 1.46280 1.33577 1.21559 0.82738 0.81432 0.83122 1.90651 1.26685 1.56607 1.66980 1.21862 1.04476 0.96247 0.94005 1.18901 0.88528 0.97202 0.95384 1.21252 0.93168 1.26509 1.15341 0.92565 1.25024 0.95396 0.96538 0.97439 1.70011 0.97976 1.44048 1.40829 0.86545 0.78071 0.80964 0.82444 1.19729 1.21042 1.21047 1.21268 0.99461 0.87981 0.90480 1.20532 0.75933 0.81377 0.89882 1.90798 1.46539 1.74532 1.19280 0.76038 0.86632 0.86748 0.85568 0.85675 0.91066 0.89620 0.89562 0.90164 0.91555 0.88709 0.90321 0.90113 0.95910 0.95922 0.93059 0.88736 0.89879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 19.25 29.55 0.57 -1.36 16 2 C -0.23 -3.06 13.68 -37.12 -0.51 -3.56 16 3 C 0.22 2.37 6.03 -6.83 -0.04 2.33 16 4 N -0.57 -6.56 2.52 -118.54 -0.30 -6.85 16 5 C 0.53 5.51 8.09 -10.98 -0.09 5.42 16 6 O -0.48 -6.24 17.48 5.60 0.10 -6.14 16 7 C -0.15 -0.98 6.30 -27.13 -0.17 -1.15 16 8 C -0.11 -1.00 0.69 -155.70 -0.11 -1.10 16 9 C -0.10 -0.64 4.52 -26.94 -0.12 -0.76 16 10 C -0.15 -1.29 5.81 -26.57 -0.15 -1.44 16 11 C 0.11 1.18 6.33 -3.71 -0.02 1.15 16 12 N -0.62 -8.90 2.52 -173.04 -0.44 -9.34 16 13 C 0.52 10.40 7.70 -10.98 -0.08 10.32 16 14 O -0.53 -12.94 15.41 5.55 0.09 -12.85 16 15 C -0.13 -2.66 3.99 -27.88 -0.11 -2.77 16 16 C 0.04 1.03 4.26 -27.89 -0.12 0.91 16 17 C -0.52 -15.11 9.11 -34.44 -0.31 -15.42 16 18 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 19 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 20 N -0.89 -27.83 13.29 55.43 0.74 -27.09 16 21 Si 0.89 21.90 29.54 -169.99 -5.02 16.88 16 22 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 23 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 24 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 25 C 0.13 1.52 4.94 -3.95 -0.02 1.50 16 26 C 0.54 6.75 6.49 -11.25 -0.07 6.68 16 27 O -0.44 -7.24 14.96 5.61 0.08 -7.16 16 28 H 0.22 2.13 7.80 -54.08 -0.42 1.70 16 29 H 0.12 1.17 7.84 -51.93 -0.41 0.76 16 30 H 0.11 1.02 7.83 -51.93 -0.41 0.61 16 31 H 0.13 0.47 7.72 -51.93 -0.40 0.07 16 32 H 0.13 0.67 7.72 -51.93 -0.40 0.27 16 33 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.09 1.01 5.96 -51.93 -0.31 0.70 16 36 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.09 1.08 5.93 -51.93 -0.31 0.77 16 39 H 0.08 1.48 7.94 -51.93 -0.41 1.07 16 40 H 0.08 1.61 7.70 -51.93 -0.40 1.21 16 41 H 0.02 0.70 8.10 -51.93 -0.42 0.27 16 42 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 43 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 44 H 0.09 1.36 7.00 -51.93 -0.36 0.99 16 45 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 376.08 15.07 5.67 5.67 Total: -1.00 -39.27 376.08 -6.88 -46.15 By element: Atomic # 1 Polarization: 4.73 SS G_CDS: -6.33 Total: -1.60 kcal Atomic # 6 Polarization: 3.80 SS G_CDS: -1.46 Total: 2.33 kcal Atomic # 7 Polarization: -43.28 SS G_CDS: 0.00 Total: -43.28 kcal Atomic # 8 Polarization: -26.42 SS G_CDS: 0.27 Total: -26.15 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -39.27 -6.88 -46.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269990401.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.189 kcal (2) G-P(sol) polarization free energy of solvation -39.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.60 seconds