Wall clock time and date at job start Tue Mar 31 2020 17:49:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 N 1.46495 * 109.46763 * 218.60040 * 3 2 1 5 5 C 1.33958 * 122.78902 * 89.97816 * 4 3 2 6 6 O 1.21229 * 125.40953 * 0.07022 * 5 4 3 7 7 C 1.51451 * 109.18019 * 180.02562 * 5 4 3 8 8 C 1.53733 * 103.35820 * 359.97438 * 7 5 4 9 9 C 1.52449 * 110.36371 * 241.23302 * 8 7 5 10 10 C 1.53132 * 109.61210 * 177.70095 * 9 8 7 11 11 C 1.53186 * 109.29010 * 60.43802 * 10 9 8 12 12 N 1.46930 * 108.90307 * 304.90772 * 11 10 9 13 13 C 1.34776 * 120.68369 * 234.01274 * 12 11 10 14 14 O 1.21285 * 119.99942 * 180.02562 * 13 12 11 15 15 C 1.50703 * 120.00196 * 0.02562 * 13 12 11 16 16 C 1.52996 * 109.47259 * 179.97438 * 15 13 12 17 17 C 1.50699 * 109.47045 * 180.02562 * 16 15 13 18 18 H 1.07997 * 120.00307 * 359.97438 * 17 16 15 19 19 C 1.37881 * 119.99717 * 180.02562 * 17 16 15 20 20 N 1.31508 * 120.00129 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99659 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47246 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47139 * 119.99678 * 21 19 17 24 24 H 1.48501 * 109.46778 * 239.99602 * 21 19 17 25 25 C 1.47042 * 118.63261 * 54.04252 * 12 11 10 26 26 C 1.34052 * 122.78515 * 270.01816 * 4 3 2 27 27 O 1.21223 * 125.49974 * 359.97438 * 26 4 3 28 28 H 4.40634 * 5.51432 * 179.97438 * 4 1 2 29 29 H 1.08992 * 109.46847 * 98.60042 * 3 2 1 30 30 H 1.09002 * 109.47113 * 338.59917 * 3 2 1 31 31 H 1.09007 * 110.64126 * 241.53367 * 7 5 4 32 32 H 1.08993 * 110.64736 * 118.46723 * 7 5 4 33 33 H 1.09002 * 109.44625 * 57.65960 * 9 8 7 34 34 H 1.08997 * 109.42362 * 297.72975 * 9 8 7 35 35 H 1.08998 * 109.50197 * 300.49025 * 10 9 8 36 36 H 1.09001 * 109.50309 * 180.38262 * 10 9 8 37 37 H 1.08997 * 109.56638 * 64.73580 * 11 10 9 38 38 H 1.08998 * 109.56307 * 185.08430 * 11 10 9 39 39 H 1.09004 * 109.46965 * 299.99947 * 15 13 12 40 40 H 1.09007 * 109.46717 * 59.99573 * 15 13 12 41 41 H 1.09004 * 109.47221 * 299.99952 * 16 15 13 42 42 H 1.08999 * 109.47264 * 59.99932 * 16 15 13 43 43 H 0.97001 * 119.99796 * 180.02562 * 20 19 17 44 44 H 1.08998 * 109.58429 * 187.48730 * 25 12 11 45 45 H 1.09002 * 109.69722 * 67.13701 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1338 1.0803 0.8617 5 6 3.3753 0.9125 2.1686 6 8 3.2264 -0.1218 2.7833 7 6 3.8648 2.2198 2.7561 8 6 3.8630 3.1737 1.5505 9 6 5.2726 3.6859 1.2772 10 6 5.2607 4.5881 0.0399 11 6 4.3331 5.7808 0.2921 12 7 3.0059 5.2793 0.6738 13 6 1.9032 5.6762 0.0082 14 8 0.8136 5.2547 0.3341 15 6 2.0240 6.6437 -1.1409 16 6 0.6354 6.9265 -1.7176 17 6 0.7563 7.8935 -2.8671 18 1 1.7264 8.2693 -3.1570 19 6 -0.3718 8.2995 -3.5480 20 7 -1.5532 7.8424 -3.1947 21 14 -0.2219 9.4976 -4.9733 22 1 1.2054 9.8581 -5.1689 23 1 -0.7469 8.8644 -6.2096 24 1 -1.0050 10.7234 -4.6739 25 6 2.9054 4.3359 1.7972 26 6 3.3749 2.3185 0.4080 27 8 3.2253 2.6905 -0.7360 28 1 -1.0501 -0.0001 -0.0003 29 1 3.0093 0.1545 -1.0161 30 1 3.0098 -0.9560 0.3750 31 1 4.8728 2.1079 3.1556 32 1 3.1816 2.5740 3.5279 33 1 5.9385 2.8407 1.1037 34 1 5.6247 4.2548 2.1377 35 1 4.9006 4.0224 -0.8194 36 1 6.2705 4.9478 -0.1578 37 1 4.7374 6.3936 1.0978 38 1 4.2506 6.3774 -0.6163 39 1 2.4673 7.5746 -0.7870 40 1 2.6575 6.2109 -1.9152 41 1 0.1925 5.9955 -2.0716 42 1 0.0016 7.3591 -0.9435 43 1 -2.3468 8.1277 -3.6740 44 1 1.8848 3.9597 1.8681 45 1 3.1743 4.8400 2.7254 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269990401.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:49:12 Heat of formation + Delta-G solvation = -71.516730 kcal Electronic energy + Delta-G solvation = -29413.528002 eV Core-core repulsion = 25396.710459 eV Total energy + Delta-G solvation = -4016.817543 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 2.87 seconds Orbital eigenvalues (eV) -43.44125 -41.02034 -39.80376 -38.36090 -37.15411 -35.72528 -35.57259 -33.93005 -33.03086 -32.75404 -29.90394 -28.27177 -27.77787 -26.30026 -25.48220 -23.49715 -23.19379 -22.47828 -20.68375 -19.81085 -19.35972 -18.81822 -18.36338 -17.73077 -17.62725 -17.36610 -16.76769 -16.55747 -16.43175 -16.04146 -15.62776 -15.42914 -15.28656 -14.90988 -14.70792 -14.63831 -14.55977 -14.28305 -14.19604 -13.75451 -13.59671 -13.51216 -13.19409 -12.89578 -12.84706 -12.47867 -12.28538 -12.04904 -11.97024 -11.88564 -11.77871 -11.52995 -11.44631 -11.31159 -11.29486 -11.18141 -10.89798 -10.65313 -10.59913 -9.59669 -8.19663 -6.34208 0.40387 0.95567 1.40338 1.42578 1.55876 1.56936 1.61287 1.70989 1.97308 2.04695 2.41914 2.94877 3.06005 3.13159 3.22228 3.33134 3.50035 3.84968 3.91206 4.03627 4.09309 4.13036 4.18937 4.37382 4.38928 4.46509 4.50718 4.55047 4.60398 4.65702 4.78659 4.79008 4.81027 4.95503 4.99661 5.11337 5.18986 5.45311 5.47609 5.58958 5.62860 5.67314 5.82334 6.15425 6.21485 6.37442 6.39806 6.64316 6.84006 7.27483 7.36266 8.93540 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.015021 B = 0.003308 C = 0.002944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1863.581505 B = 8462.143407 C = 9508.039350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.254 4.254 3 C 0.208 3.792 4 N -0.579 5.579 5 C 0.527 3.473 6 O -0.511 6.511 7 C -0.130 4.130 8 C -0.100 4.100 9 C -0.091 4.091 10 C -0.145 4.145 11 C 0.100 3.900 12 N -0.608 5.608 13 C 0.515 3.485 14 O -0.595 6.595 15 C -0.114 4.114 16 C 0.046 3.954 17 C -0.542 4.542 18 H 0.076 0.924 19 C -0.008 4.008 20 N -0.939 5.939 21 Si 0.976 3.024 22 H -0.251 1.251 23 H -0.282 1.282 24 H -0.278 1.278 25 C 0.125 3.875 26 C 0.525 3.475 27 O -0.494 6.494 28 H 0.245 0.755 29 H 0.117 0.883 30 H 0.134 0.866 31 H 0.173 0.827 32 H 0.145 0.855 33 H 0.091 0.909 34 H 0.129 0.871 35 H 0.049 0.951 36 H 0.112 0.888 37 H 0.108 0.892 38 H 0.082 0.918 39 H 0.107 0.893 40 H 0.091 0.909 41 H -0.028 1.028 42 H -0.017 1.017 43 H 0.263 0.737 44 H 0.057 0.943 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.527 -11.668 14.420 28.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.255 4.255 3 C 0.088 3.912 4 N -0.322 5.322 5 C 0.319 3.681 6 O -0.385 6.385 7 C -0.169 4.169 8 C -0.104 4.104 9 C -0.128 4.128 10 C -0.183 4.183 11 C -0.021 4.021 12 N -0.341 5.341 13 C 0.305 3.695 14 O -0.475 6.475 15 C -0.153 4.153 16 C 0.008 3.992 17 C -0.579 4.579 18 H 0.094 0.906 19 C -0.205 4.205 20 N -0.579 5.579 21 Si 0.800 3.200 22 H -0.174 1.174 23 H -0.208 1.208 24 H -0.203 1.203 25 C 0.002 3.998 26 C 0.315 3.685 27 O -0.364 6.364 28 H 0.261 0.739 29 H 0.135 0.865 30 H 0.152 0.848 31 H 0.191 0.809 32 H 0.163 0.837 33 H 0.109 0.891 34 H 0.147 0.853 35 H 0.068 0.932 36 H 0.131 0.869 37 H 0.126 0.874 38 H 0.100 0.900 39 H 0.125 0.875 40 H 0.109 0.891 41 H -0.010 1.010 42 H 0.002 0.998 43 H 0.071 0.929 44 H 0.075 0.925 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 20.668 -12.238 14.234 27.920 hybrid contribution -1.543 -0.011 -1.306 2.022 sum 19.125 -12.249 12.928 26.133 Atomic orbital electron populations 1.25878 0.97140 0.97289 0.98171 1.23739 0.95773 1.03259 1.02756 1.18627 0.83741 0.91876 0.96999 1.47122 1.59386 1.13061 1.12597 1.21571 0.74365 0.91713 0.80467 1.90766 1.50681 1.32844 1.64165 1.22742 1.08958 0.87677 0.97511 1.21621 1.00926 0.95335 0.92512 1.21554 0.89892 1.00873 1.00527 1.22088 1.01010 0.96630 0.98612 1.22088 0.80339 0.97001 1.02708 1.48139 1.07473 1.45460 1.32994 1.21260 0.83511 0.81414 0.83311 1.90624 1.29298 1.58859 1.68758 1.21586 1.00348 0.98339 0.95052 1.18658 0.91587 0.94412 0.94532 1.21725 0.94171 1.26500 1.15546 0.90557 1.26179 0.94790 0.98693 1.00867 1.70197 0.99153 1.45870 1.42666 0.85240 0.79220 0.77858 0.77728 1.17405 1.20760 1.20321 1.21588 0.98509 0.88653 0.91025 1.21349 0.74955 0.81994 0.90232 1.90780 1.48680 1.75404 1.21568 0.73906 0.86466 0.84799 0.80946 0.83705 0.89077 0.85281 0.93245 0.86933 0.87370 0.89979 0.87507 0.89110 1.01007 0.99843 0.92864 0.92462 0.85113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.59 19.25 74.32 1.43 -3.16 16 2 C -0.25 -7.30 13.68 31.13 0.43 -6.87 16 3 C 0.21 4.80 6.03 84.58 0.51 5.31 16 4 N -0.58 -13.15 2.52 -766.64 -1.93 -15.08 16 5 C 0.53 10.03 8.09 88.02 0.71 10.75 16 6 O -0.51 -12.58 17.48 -2.87 -0.05 -12.63 16 7 C -0.13 -1.17 6.30 30.33 0.19 -0.98 16 8 C -0.10 -1.50 0.69 -52.96 -0.04 -1.53 16 9 C -0.09 -0.72 4.52 30.46 0.14 -0.58 16 10 C -0.15 -2.00 5.81 30.70 0.18 -1.82 16 11 C 0.10 1.78 6.33 86.36 0.55 2.32 16 12 N -0.61 -16.71 2.52 -819.75 -2.07 -18.78 16 13 C 0.51 21.39 7.70 87.66 0.68 22.06 16 14 O -0.59 -31.05 15.41 -3.05 -0.05 -31.10 16 15 C -0.11 -4.93 3.99 29.85 0.12 -4.81 16 16 C 0.05 2.69 4.26 29.85 0.13 2.82 16 17 C -0.54 -31.97 9.11 25.60 0.23 -31.74 16 18 H 0.08 4.10 7.74 -2.91 -0.02 4.07 16 19 C -0.01 -0.48 5.46 84.66 0.46 -0.02 16 20 N -0.94 -61.28 13.29 21.45 0.28 -61.00 16 21 Si 0.98 45.32 29.54 68.60 2.03 47.34 16 22 H -0.25 -10.67 7.11 99.48 0.71 -9.96 16 23 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 24 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 25 C 0.13 2.61 4.94 86.14 0.43 3.03 16 26 C 0.52 13.15 6.49 87.81 0.57 13.72 16 27 O -0.49 -16.91 14.96 -2.85 -0.04 -16.95 16 28 H 0.24 5.03 7.80 -4.41 -0.03 4.99 16 29 H 0.12 2.58 7.84 -2.39 -0.02 2.56 16 30 H 0.13 2.45 7.83 -2.39 -0.02 2.43 16 31 H 0.17 0.08 7.72 -2.38 -0.02 0.06 16 32 H 0.15 0.87 7.72 -2.39 -0.02 0.86 16 33 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 34 H 0.13 0.06 8.14 -2.39 -0.02 0.04 16 35 H 0.05 1.09 5.96 -2.39 -0.01 1.08 16 36 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.08 1.68 5.93 -2.39 -0.01 1.66 16 39 H 0.11 3.96 7.94 -2.38 -0.02 3.94 16 40 H 0.09 3.71 7.70 -2.38 -0.02 3.69 16 41 H -0.03 -1.94 8.10 -2.38 -0.02 -1.96 16 42 H -0.02 -1.11 8.10 -2.39 -0.02 -1.12 16 43 H 0.26 15.96 8.31 -92.71 -0.77 15.19 16 44 H 0.06 1.66 7.00 -2.39 -0.02 1.65 16 45 H 0.13 1.55 8.14 -2.39 -0.02 1.53 16 Total: -1.00 -96.44 376.08 5.88 -90.55 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: 1.00 Total: 9.15 kcal Atomic # 6 Polarization: 1.78 SS G_CDS: 6.71 Total: 8.49 kcal Atomic # 7 Polarization: -91.15 SS G_CDS: -3.71 Total: -94.86 kcal Atomic # 8 Polarization: -60.53 SS G_CDS: -0.14 Total: -60.67 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.34 kcal Total: -96.44 5.88 -90.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269990401.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.036 kcal (2) G-P(sol) polarization free energy of solvation -96.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.88 seconds