Wall clock time and date at job start Tue Mar 31 2020 17:20:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47199 * 1 3 3 C 1.17392 * 179.97438 * 2 1 4 4 C 1.43206 * 179.97438 * 148.30664 * 3 2 1 5 5 O 1.21612 * 119.99823 * 82.22826 * 4 3 2 6 6 N 1.34772 * 119.99815 * 262.21931 * 4 3 2 7 7 C 1.47710 * 134.43588 * 180.02562 * 6 4 3 8 8 C 1.53281 * 85.91319 * 155.81322 * 7 6 4 9 9 C 1.47712 * 134.44254 * 359.95930 * 6 4 3 10 10 C 1.53761 * 114.70699 * 267.36301 * 8 7 6 11 11 C 1.55458 * 102.01717 * 250.22113 * 10 8 7 12 12 C 1.55000 * 101.02904 * 326.41347 * 11 10 8 13 13 H 1.09002 * 110.38565 * 277.11386 * 12 11 10 14 14 C 1.50699 * 110.30502 * 155.00912 * 12 11 10 15 15 O 1.21285 * 119.99879 * 247.79864 * 14 12 11 16 16 N 1.34775 * 120.00193 * 67.79247 * 14 12 11 17 17 C 1.47580 * 134.49629 * 180.02562 * 16 14 12 18 18 C 1.53946 * 86.24073 * 155.42618 * 17 16 14 19 19 C 1.50699 * 113.74034 * 137.89610 * 18 17 16 20 20 H 1.08005 * 119.99956 * 359.97438 * 19 18 17 21 21 C 1.37874 * 120.00116 * 180.02562 * 19 18 17 22 22 N 1.31517 * 119.99923 * 180.02562 * 21 19 18 23 23 Si 1.86795 * 119.99924 * 0.02562 * 21 19 18 24 24 H 1.48500 * 109.47489 * 90.00188 * 23 21 19 25 25 H 1.48509 * 109.47303 * 209.99829 * 23 21 19 26 26 H 1.48498 * 109.47310 * 330.00046 * 23 21 19 27 27 C 1.47812 * 134.57995 * 359.95741 * 16 14 12 28 28 O 1.42528 * 115.51292 * 140.19046 * 8 7 6 29 29 H 1.09003 * 109.47072 * 129.47020 * 1 2 3 30 30 H 1.08998 * 109.47404 * 249.47132 * 1 2 3 31 31 H 1.09004 * 109.47320 * 9.46953 * 1 2 3 32 32 H 1.09001 * 113.80178 * 41.56856 * 7 6 4 33 33 H 1.09002 * 113.91154 * 270.07527 * 7 6 4 34 34 H 1.09000 * 113.80157 * 89.93445 * 9 6 4 35 35 H 1.08999 * 113.79484 * 318.43525 * 9 6 4 36 36 H 1.09002 * 110.92634 * 8.40202 * 10 8 7 37 37 H 1.08997 * 110.92539 * 132.01087 * 10 8 7 38 38 H 1.08995 * 111.11089 * 208.46905 * 11 10 8 39 39 H 1.09003 * 111.10768 * 84.35085 * 11 10 8 40 40 H 1.09002 * 113.76914 * 41.06930 * 17 16 14 41 41 H 1.09000 * 113.77064 * 269.78402 * 17 16 14 42 42 H 1.08995 * 113.74143 * 269.20333 * 18 17 16 43 43 H 0.97001 * 119.99548 * 180.02562 * 22 21 19 44 44 H 1.08996 * 113.67199 * 90.26545 * 27 16 14 45 45 H 1.08996 * 113.93703 * 318.91196 * 27 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4720 0.0000 0.0000 3 6 2.6459 0.0005 0.0000 4 6 4.0780 0.0017 -0.0003 5 8 4.6859 -0.1402 -1.0440 6 7 4.7519 0.1603 1.1559 7 6 6.1824 0.2118 1.5204 8 6 5.7283 1.0108 2.7472 9 6 4.3559 0.3533 2.5658 10 6 5.7398 2.5370 2.5604 11 6 6.9235 2.9657 3.4725 12 6 6.8151 1.9191 4.6106 13 1 6.0702 2.2304 5.3430 14 6 8.1539 1.7294 5.2759 15 8 8.7458 0.6774 5.1584 16 7 8.6935 2.7289 6.0014 17 6 9.9444 2.8924 6.7673 18 6 9.7707 4.4041 6.5337 19 6 10.0762 5.2445 7.7468 20 1 10.3838 4.7716 8.6678 21 6 9.9619 6.6169 7.6812 22 7 10.2289 7.3503 8.7397 23 14 9.4277 7.4346 6.0889 24 1 7.9480 7.5590 6.0684 25 1 10.0392 8.7847 5.9963 26 1 9.8710 6.6102 4.9361 27 6 8.2726 4.1023 6.3498 28 8 6.4017 0.7018 3.9647 29 1 -0.3633 -0.6533 -0.7933 30 1 -0.3634 -0.3604 0.9624 31 1 -0.3634 1.0137 -0.1691 32 1 6.7936 0.7853 0.8235 33 1 6.6119 -0.7603 1.7629 34 1 4.2371 -0.5773 3.1208 35 1 3.5189 1.0391 2.6976 36 1 5.9342 2.8005 1.5208 37 1 4.8040 2.9782 2.9034 38 1 6.7792 3.9766 3.8537 39 1 7.8750 2.8781 2.9479 40 1 10.8197 2.4693 6.2745 41 1 9.8609 2.5970 7.8132 42 1 10.2592 4.7673 5.6296 43 1 10.1481 8.3158 8.6936 44 1 7.6958 4.1624 7.2727 45 1 7.8130 4.6467 5.5249 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271094984.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:20:21 Heat of formation + Delta-G solvation = 20.767120 kcal Electronic energy + Delta-G solvation = -27855.932933 eV Core-core repulsion = 23843.117118 eV Total energy + Delta-G solvation = -4012.815815 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.42396 -39.85413 -38.96562 -37.44683 -36.50104 -34.66615 -32.81307 -32.46642 -30.88931 -29.82069 -28.90423 -26.97984 -26.83478 -25.40114 -24.93076 -22.71372 -22.42805 -20.26894 -19.92998 -18.52232 -18.44411 -17.47715 -17.12454 -16.90046 -16.53255 -16.21849 -15.62800 -15.35859 -15.04096 -14.77924 -14.37362 -14.24580 -14.08556 -13.99563 -13.81678 -13.54847 -13.45307 -13.18466 -13.03977 -12.63327 -12.22164 -12.15779 -11.93661 -11.87802 -11.75233 -11.63768 -11.15936 -11.03704 -10.93367 -10.75437 -10.74931 -10.54353 -10.15267 -10.05636 -9.83781 -9.44055 -9.19639 -9.08857 -8.75807 -8.14179 -6.27299 -4.30591 1.17508 1.76451 2.39652 2.78774 3.00083 3.11779 3.17623 3.21916 3.23849 3.53063 3.70322 3.83027 4.10198 4.16363 4.22769 4.58131 4.67471 4.75892 4.93121 4.93245 4.94722 4.95105 4.96498 5.01092 5.11292 5.16911 5.23052 5.29876 5.35080 5.44267 5.48199 5.57207 5.67957 5.78114 5.89516 6.02379 6.09486 6.18340 6.28186 6.41279 6.69409 6.82671 7.09274 7.13845 7.46704 7.64698 8.17233 8.30861 8.51404 8.76350 9.32613 10.84743 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.019431 B = 0.002385 C = 0.002257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.682274 B =11735.375398 C =12400.824493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 C -0.080 4.080 3 C -0.227 4.227 4 C 0.661 3.339 5 O -0.522 6.522 6 N -0.632 5.632 7 C 0.113 3.887 8 C 0.072 3.928 9 C 0.102 3.898 10 C -0.126 4.126 11 C -0.144 4.144 12 C 0.068 3.932 13 H 0.100 0.900 14 C 0.527 3.473 15 O -0.540 6.540 16 N -0.638 5.638 17 C 0.120 3.880 18 C -0.011 4.011 19 C -0.514 4.514 20 H 0.080 0.920 21 C 0.077 3.923 22 N -0.891 5.891 23 Si 0.872 3.128 24 H -0.274 1.274 25 H -0.286 1.286 26 H -0.262 1.262 27 C 0.083 3.917 28 O -0.326 6.326 29 H 0.091 0.909 30 H 0.092 0.908 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.102 0.898 34 H 0.100 0.900 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.089 0.911 38 H 0.098 0.902 39 H 0.087 0.913 40 H 0.066 0.934 41 H 0.082 0.918 42 H 0.064 0.936 43 H 0.267 0.733 44 H 0.089 0.911 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.554 -9.418 -13.185 24.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.082 4.082 3 C -0.230 4.230 4 C 0.451 3.549 5 O -0.400 6.400 6 N -0.369 5.369 7 C -0.009 4.009 8 C 0.030 3.970 9 C -0.021 4.021 10 C -0.163 4.163 11 C -0.182 4.182 12 C 0.008 3.992 13 H 0.117 0.883 14 C 0.315 3.685 15 O -0.418 6.418 16 N -0.374 5.374 17 C -0.001 4.001 18 C -0.031 4.031 19 C -0.552 4.552 20 H 0.098 0.902 21 C -0.127 4.127 22 N -0.528 5.528 23 Si 0.699 3.301 24 H -0.199 1.199 25 H -0.212 1.212 26 H -0.187 1.187 27 C -0.039 4.039 28 O -0.243 6.243 29 H 0.109 0.891 30 H 0.110 0.890 31 H 0.111 0.889 32 H 0.111 0.889 33 H 0.120 0.880 34 H 0.118 0.882 35 H 0.109 0.891 36 H 0.110 0.890 37 H 0.107 0.893 38 H 0.116 0.884 39 H 0.106 0.894 40 H 0.085 0.915 41 H 0.100 0.900 42 H 0.082 0.918 43 H 0.077 0.923 44 H 0.107 0.893 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -18.030 -10.257 -13.942 24.994 hybrid contribution -0.529 0.689 -0.704 1.119 sum -18.559 -9.568 -14.647 25.505 Atomic orbital electron populations 1.19151 0.83335 1.04204 1.04187 1.22718 0.93829 0.93833 0.97826 1.20477 0.92226 1.06260 1.04023 1.14062 0.82380 0.76380 0.82087 1.90879 1.68838 1.49669 1.30577 1.49404 1.09507 1.71786 1.06173 1.23545 0.82387 1.01517 0.93447 1.23456 0.92300 0.95327 0.85913 1.23634 0.97545 1.01326 0.79619 1.22838 0.99705 0.91867 1.01926 1.23296 0.99760 0.99782 0.95325 1.22880 0.95289 0.85216 0.95861 0.88285 1.19890 0.86117 0.82811 0.79726 1.90683 1.62573 1.26098 1.62465 1.50337 1.23737 1.14590 1.48758 1.23299 0.84904 0.96795 0.95093 1.21051 0.90695 0.92197 0.99116 1.20823 1.46883 0.90867 0.96599 0.90173 1.25014 0.94238 0.97307 0.96147 1.69890 1.47786 1.06005 1.29092 0.86910 0.79302 0.79279 0.84610 1.19930 1.21152 1.18661 1.24132 1.02363 0.78464 0.98935 1.88484 1.74370 1.27906 1.33503 0.89061 0.88975 0.88862 0.88855 0.88029 0.88160 0.89116 0.89043 0.89268 0.88403 0.89388 0.91530 0.89979 0.91773 0.92318 0.89319 0.92301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.18 10.32 34.37 0.35 0.18 16 2 C -0.08 -0.65 14.13 -37.12 -0.52 -1.18 16 3 C -0.23 -2.49 13.34 -38.83 -0.52 -3.01 16 4 C 0.66 8.57 7.88 -14.33 -0.11 8.45 16 5 O -0.52 -8.61 17.81 5.27 0.09 -8.51 16 6 N -0.63 -6.87 3.58 -184.63 -0.66 -7.53 16 7 C 0.11 1.21 8.27 -3.24 -0.03 1.19 16 8 C 0.07 0.73 1.68 -90.06 -0.15 0.58 16 9 C 0.10 0.87 8.07 -3.25 -0.03 0.85 16 10 C -0.13 -1.11 6.32 -25.03 -0.16 -1.27 16 11 C -0.14 -1.57 6.33 -24.37 -0.15 -1.73 16 12 C 0.07 0.91 3.63 -26.83 -0.10 0.81 16 13 H 0.10 1.15 8.14 -51.93 -0.42 0.72 16 14 C 0.53 9.35 7.40 -10.99 -0.08 9.27 16 15 O -0.54 -11.61 17.28 -13.75 -0.24 -11.85 16 16 N -0.64 -11.39 3.62 -177.44 -0.64 -12.03 16 17 C 0.12 2.27 8.38 -2.97 -0.02 2.25 16 18 C -0.01 -0.23 2.90 -90.84 -0.26 -0.49 16 19 C -0.51 -12.68 9.32 -34.44 -0.32 -13.01 16 20 H 0.08 2.17 8.06 -52.48 -0.42 1.74 16 21 C 0.08 1.97 5.47 -17.82 -0.10 1.87 16 22 N -0.89 -24.87 13.96 55.43 0.77 -24.10 16 23 Si 0.87 18.87 27.17 -169.99 -4.62 14.25 16 24 H -0.27 -5.67 7.11 56.52 0.40 -5.26 16 25 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 26 H -0.26 -5.37 6.25 56.52 0.35 -5.02 16 27 C 0.08 1.45 7.37 -2.86 -0.02 1.43 16 28 O -0.33 -4.43 10.39 -54.53 -0.57 -4.99 16 29 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 30 H 0.09 0.17 8.14 -51.93 -0.42 -0.25 16 31 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 32 H 0.09 0.97 7.98 -51.93 -0.41 0.56 16 33 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.09 0.61 8.01 -51.93 -0.42 0.19 16 36 H 0.09 0.77 7.83 -51.93 -0.41 0.36 16 37 H 0.09 0.63 8.01 -51.93 -0.42 0.22 16 38 H 0.10 0.97 6.97 -51.93 -0.36 0.61 16 39 H 0.09 1.05 8.04 -51.93 -0.42 0.63 16 40 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 41 H 0.08 1.53 8.09 -51.93 -0.42 1.11 16 42 H 0.06 1.33 6.58 -51.93 -0.34 0.99 16 43 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 44 H 0.09 1.54 8.09 -51.93 -0.42 1.12 16 45 H 0.06 0.91 6.77 -51.93 -0.35 0.55 16 LS Contribution 384.83 15.07 5.80 5.80 Total: -1.00 -33.54 384.83 -8.82 -42.36 By element: Atomic # 1 Polarization: 6.94 SS G_CDS: -6.53 Total: 0.41 kcal Atomic # 6 Polarization: 8.43 SS G_CDS: -2.22 Total: 6.21 kcal Atomic # 7 Polarization: -43.13 SS G_CDS: -0.53 Total: -43.66 kcal Atomic # 8 Polarization: -24.65 SS G_CDS: -0.71 Total: -25.36 kcal Atomic # 14 Polarization: 18.87 SS G_CDS: -4.62 Total: 14.25 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.54 -8.82 -42.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271094984.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.124 kcal (2) G-P(sol) polarization free energy of solvation -33.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.357 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds