Wall clock time and date at job start Tue Mar 31 2020 17:20:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47199 * 1 3 3 C 1.17392 * 179.97438 * 2 1 4 4 C 1.43206 * 179.97438 * 148.30664 * 3 2 1 5 5 O 1.21612 * 119.99823 * 82.22826 * 4 3 2 6 6 N 1.34772 * 119.99815 * 262.21931 * 4 3 2 7 7 C 1.47710 * 134.43588 * 180.02562 * 6 4 3 8 8 C 1.53281 * 85.91319 * 155.81322 * 7 6 4 9 9 C 1.47712 * 134.44254 * 359.95930 * 6 4 3 10 10 C 1.53761 * 114.70699 * 267.36301 * 8 7 6 11 11 C 1.55458 * 102.01717 * 250.22113 * 10 8 7 12 12 C 1.55000 * 101.02904 * 326.41347 * 11 10 8 13 13 H 1.09002 * 110.38565 * 277.11386 * 12 11 10 14 14 C 1.50699 * 110.30502 * 155.00912 * 12 11 10 15 15 O 1.21285 * 119.99879 * 247.79864 * 14 12 11 16 16 N 1.34775 * 120.00193 * 67.79247 * 14 12 11 17 17 C 1.47580 * 134.49629 * 180.02562 * 16 14 12 18 18 C 1.53946 * 86.24073 * 155.42618 * 17 16 14 19 19 C 1.50699 * 113.74034 * 137.89610 * 18 17 16 20 20 H 1.08005 * 119.99956 * 359.97438 * 19 18 17 21 21 C 1.37874 * 120.00116 * 180.02562 * 19 18 17 22 22 N 1.31517 * 119.99923 * 180.02562 * 21 19 18 23 23 Si 1.86795 * 119.99924 * 0.02562 * 21 19 18 24 24 H 1.48500 * 109.47489 * 90.00188 * 23 21 19 25 25 H 1.48509 * 109.47303 * 209.99829 * 23 21 19 26 26 H 1.48498 * 109.47310 * 330.00046 * 23 21 19 27 27 C 1.47812 * 134.57995 * 359.95741 * 16 14 12 28 28 O 1.42528 * 115.51292 * 140.19046 * 8 7 6 29 29 H 1.09003 * 109.47072 * 129.47020 * 1 2 3 30 30 H 1.08998 * 109.47404 * 249.47132 * 1 2 3 31 31 H 1.09004 * 109.47320 * 9.46953 * 1 2 3 32 32 H 1.09001 * 113.80178 * 41.56856 * 7 6 4 33 33 H 1.09002 * 113.91154 * 270.07527 * 7 6 4 34 34 H 1.09000 * 113.80157 * 89.93445 * 9 6 4 35 35 H 1.08999 * 113.79484 * 318.43525 * 9 6 4 36 36 H 1.09002 * 110.92634 * 8.40202 * 10 8 7 37 37 H 1.08997 * 110.92539 * 132.01087 * 10 8 7 38 38 H 1.08995 * 111.11089 * 208.46905 * 11 10 8 39 39 H 1.09003 * 111.10768 * 84.35085 * 11 10 8 40 40 H 1.09002 * 113.76914 * 41.06930 * 17 16 14 41 41 H 1.09000 * 113.77064 * 269.78402 * 17 16 14 42 42 H 1.08995 * 113.74143 * 269.20333 * 18 17 16 43 43 H 0.97001 * 119.99548 * 180.02562 * 22 21 19 44 44 H 1.08996 * 113.67199 * 90.26545 * 27 16 14 45 45 H 1.08996 * 113.93703 * 318.91196 * 27 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4720 0.0000 0.0000 3 6 2.6459 0.0005 0.0000 4 6 4.0780 0.0017 -0.0003 5 8 4.6859 -0.1402 -1.0440 6 7 4.7519 0.1603 1.1559 7 6 6.1824 0.2118 1.5204 8 6 5.7283 1.0108 2.7472 9 6 4.3559 0.3533 2.5658 10 6 5.7398 2.5370 2.5604 11 6 6.9235 2.9657 3.4725 12 6 6.8151 1.9191 4.6106 13 1 6.0702 2.2304 5.3430 14 6 8.1539 1.7294 5.2759 15 8 8.7458 0.6774 5.1584 16 7 8.6935 2.7289 6.0014 17 6 9.9444 2.8924 6.7673 18 6 9.7707 4.4041 6.5337 19 6 10.0762 5.2445 7.7468 20 1 10.3838 4.7716 8.6678 21 6 9.9619 6.6169 7.6812 22 7 10.2289 7.3503 8.7397 23 14 9.4277 7.4346 6.0889 24 1 7.9480 7.5590 6.0684 25 1 10.0392 8.7847 5.9963 26 1 9.8710 6.6102 4.9361 27 6 8.2726 4.1023 6.3498 28 8 6.4017 0.7018 3.9647 29 1 -0.3633 -0.6533 -0.7933 30 1 -0.3634 -0.3604 0.9624 31 1 -0.3634 1.0137 -0.1691 32 1 6.7936 0.7853 0.8235 33 1 6.6119 -0.7603 1.7629 34 1 4.2371 -0.5773 3.1208 35 1 3.5189 1.0391 2.6976 36 1 5.9342 2.8005 1.5208 37 1 4.8040 2.9782 2.9034 38 1 6.7792 3.9766 3.8537 39 1 7.8750 2.8781 2.9479 40 1 10.8197 2.4693 6.2745 41 1 9.8609 2.5970 7.8132 42 1 10.2592 4.7673 5.6296 43 1 10.1481 8.3158 8.6936 44 1 7.6958 4.1624 7.2727 45 1 7.8130 4.6467 5.5249 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271094984.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:20:20 Heat of formation + Delta-G solvation = -1.423936 kcal Electronic energy + Delta-G solvation = -27856.895209 eV Core-core repulsion = 23843.117118 eV Total energy + Delta-G solvation = -4013.778091 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.30299 -41.13942 -40.06895 -38.76517 -37.64663 -35.26416 -34.64191 -33.45013 -31.92284 -31.03482 -29.63126 -28.11204 -27.58893 -26.88694 -26.40196 -23.67150 -23.20141 -21.77821 -20.79234 -19.92239 -19.25334 -19.13627 -18.36609 -17.85822 -17.62169 -17.25881 -16.82975 -16.59930 -15.97613 -15.76580 -15.63017 -15.18152 -14.93420 -14.75529 -14.73780 -14.57346 -14.40680 -14.27630 -14.14743 -13.91053 -13.47106 -13.38438 -13.18333 -12.97213 -12.79806 -12.69589 -12.48638 -12.37130 -11.92402 -11.78906 -11.73886 -11.55918 -11.36230 -11.28076 -11.26341 -10.99939 -10.69026 -10.43301 -10.04782 -9.63293 -8.23337 -6.31944 0.40000 1.04781 1.43540 1.47007 1.49732 1.57265 1.63126 1.79281 2.35214 2.42475 2.70337 2.87391 3.07651 3.08029 3.23540 3.33332 3.55354 3.89826 4.01101 4.04198 4.08670 4.17498 4.29281 4.33608 4.37909 4.43740 4.46722 4.52649 4.56710 4.62265 4.67908 4.70370 4.78178 4.79276 4.79583 4.80557 4.92440 4.94108 5.02181 5.02819 5.43300 5.63588 5.77762 6.20889 6.30442 6.31140 6.72567 6.74520 6.82333 7.10424 7.35374 8.92199 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.019431 B = 0.002385 C = 0.002257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.682274 B =11735.375398 C =12400.824493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C -0.034 4.034 3 C -0.294 4.294 4 C 0.658 3.342 5 O -0.576 6.576 6 N -0.629 5.629 7 C 0.101 3.899 8 C 0.071 3.929 9 C 0.111 3.889 10 C -0.115 4.115 11 C -0.141 4.141 12 C 0.072 3.928 13 H 0.127 0.873 14 C 0.522 3.478 15 O -0.586 6.586 16 N -0.636 5.636 17 C 0.116 3.884 18 C -0.017 4.017 19 C -0.514 4.514 20 H 0.037 0.963 21 C 0.017 3.983 22 N -0.946 5.946 23 Si 0.937 3.063 24 H -0.248 1.248 25 H -0.297 1.297 26 H -0.240 1.240 27 C 0.099 3.901 28 O -0.349 6.349 29 H 0.107 0.893 30 H 0.115 0.885 31 H 0.114 0.886 32 H 0.091 0.909 33 H 0.093 0.907 34 H 0.105 0.895 35 H 0.120 0.880 36 H 0.095 0.905 37 H 0.118 0.882 38 H 0.118 0.882 39 H 0.073 0.927 40 H 0.067 0.933 41 H 0.076 0.924 42 H 0.068 0.932 43 H 0.267 0.733 44 H 0.091 0.909 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.563 -8.637 -14.901 28.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.037 4.037 3 C -0.297 4.297 4 C 0.450 3.550 5 O -0.457 6.457 6 N -0.364 5.364 7 C -0.021 4.021 8 C 0.030 3.970 9 C -0.011 4.011 10 C -0.152 4.152 11 C -0.179 4.179 12 C 0.012 3.988 13 H 0.145 0.855 14 C 0.312 3.688 15 O -0.467 6.467 16 N -0.371 5.371 17 C -0.006 4.006 18 C -0.037 4.037 19 C -0.552 4.552 20 H 0.056 0.944 21 C -0.181 4.181 22 N -0.585 5.585 23 Si 0.760 3.240 24 H -0.172 1.172 25 H -0.224 1.224 26 H -0.163 1.163 27 C -0.023 4.023 28 O -0.266 6.266 29 H 0.126 0.874 30 H 0.133 0.867 31 H 0.132 0.868 32 H 0.109 0.891 33 H 0.111 0.889 34 H 0.123 0.877 35 H 0.138 0.862 36 H 0.114 0.886 37 H 0.137 0.863 38 H 0.137 0.863 39 H 0.092 0.908 40 H 0.085 0.915 41 H 0.095 0.905 42 H 0.086 0.914 43 H 0.076 0.924 44 H 0.109 0.891 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -22.069 -9.491 -15.633 28.662 hybrid contribution 0.736 0.327 -0.066 0.808 sum -21.333 -9.165 -15.699 28.027 Atomic orbital electron populations 1.19561 0.79795 1.05954 1.06008 1.23725 0.94693 0.90473 0.94803 1.20338 0.92237 1.09671 1.07411 1.14365 0.83382 0.75486 0.81767 1.90829 1.70120 1.52413 1.32350 1.49437 1.09493 1.70671 1.06760 1.23628 0.82798 1.01490 0.94221 1.23580 0.92679 0.96515 0.84248 1.23746 0.97449 1.02068 0.77847 1.22865 1.00167 0.90319 1.01894 1.23324 1.00040 0.99951 0.94597 1.22952 0.92833 0.86011 0.97027 0.85540 1.20770 0.87372 0.81736 0.78907 1.90661 1.64218 1.27875 1.63958 1.50282 1.23167 1.15092 1.48534 1.23201 0.86058 0.96102 0.95250 1.20977 0.93483 0.91997 0.97212 1.20982 1.46050 0.91472 0.96718 0.94428 1.25916 0.94382 0.97950 0.99839 1.70059 1.50233 1.06286 1.31952 0.85875 0.80232 0.77520 0.80409 1.17177 1.22372 1.16301 1.23951 0.99832 0.78048 1.00482 1.88469 1.74859 1.28590 1.34668 0.87436 0.86705 0.86752 0.89062 0.88887 0.87664 0.86243 0.88602 0.86324 0.86350 0.90850 0.91485 0.90539 0.91362 0.92429 0.89072 0.88805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.13 10.32 70.18 0.72 0.60 16 2 C -0.03 -0.47 14.13 31.13 0.44 -0.03 16 3 C -0.29 -6.11 13.34 30.02 0.40 -5.71 16 4 C 0.66 17.16 7.88 85.49 0.67 17.84 16 5 O -0.58 -19.80 17.81 -4.07 -0.07 -19.87 16 6 N -0.63 -13.18 3.58 -861.58 -3.08 -16.27 16 7 C 0.10 2.15 8.27 86.24 0.71 2.87 16 8 C 0.07 1.30 1.68 -10.32 -0.02 1.28 16 9 C 0.11 1.63 8.07 86.23 0.70 2.32 16 10 C -0.12 -1.60 6.32 31.70 0.20 -1.40 16 11 C -0.14 -2.56 6.33 32.12 0.20 -2.36 16 12 C 0.07 1.72 3.63 30.53 0.11 1.83 16 13 H 0.13 2.37 8.14 -2.39 -0.02 2.35 16 14 C 0.52 17.79 7.40 87.66 0.65 18.44 16 15 O -0.59 -25.26 17.28 15.41 0.27 -24.99 16 16 N -0.64 -21.60 3.62 -833.68 -3.02 -24.62 16 17 C 0.12 4.37 8.38 86.48 0.72 5.10 16 18 C -0.02 -0.68 2.90 -10.89 -0.03 -0.71 16 19 C -0.51 -25.75 9.32 25.60 0.24 -25.52 16 20 H 0.04 2.14 8.06 -2.91 -0.02 2.12 16 21 C 0.02 0.90 5.47 84.65 0.46 1.36 16 22 N -0.95 -54.17 13.96 21.45 0.30 -53.87 16 23 Si 0.94 37.33 27.17 68.60 1.86 39.19 16 24 H -0.25 -8.85 7.11 99.48 0.71 -8.14 16 25 H -0.30 -12.38 7.11 99.48 0.71 -11.67 16 26 H -0.24 -8.62 6.25 99.48 0.62 -7.99 16 27 C 0.10 3.14 7.37 86.43 0.64 3.77 16 28 O -0.35 -8.83 10.39 -130.52 -1.36 -10.19 16 29 H 0.11 0.01 8.14 -2.39 -0.02 -0.01 16 30 H 0.11 -0.15 8.14 -2.39 -0.02 -0.17 16 31 H 0.11 -0.10 8.14 -2.38 -0.02 -0.12 16 32 H 0.09 1.94 7.98 -2.39 -0.02 1.92 16 33 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 34 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.12 1.10 8.01 -2.39 -0.02 1.08 16 36 H 0.10 1.31 7.83 -2.39 -0.02 1.29 16 37 H 0.12 1.01 8.01 -2.39 -0.02 0.99 16 38 H 0.12 1.68 6.97 -2.39 -0.02 1.67 16 39 H 0.07 1.56 8.04 -2.39 -0.02 1.55 16 40 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 41 H 0.08 2.94 8.09 -2.39 -0.02 2.92 16 42 H 0.07 2.68 6.58 -2.39 -0.02 2.66 16 43 H 0.27 14.33 8.31 -92.71 -0.77 13.56 16 44 H 0.09 2.90 8.09 -2.39 -0.02 2.88 16 45 H 0.09 2.38 6.77 -2.39 -0.02 2.36 16 Total: -1.00 -78.35 384.83 2.65 -75.71 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: 0.92 Total: 15.24 kcal Atomic # 6 Polarization: 12.85 SS G_CDS: 6.83 Total: 19.68 kcal Atomic # 7 Polarization: -88.96 SS G_CDS: -5.80 Total: -94.76 kcal Atomic # 8 Polarization: -53.89 SS G_CDS: -1.16 Total: -55.05 kcal Atomic # 14 Polarization: 37.33 SS G_CDS: 1.86 Total: 39.19 kcal Total: -78.35 2.65 -75.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271094984.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.282 kcal (2) G-P(sol) polarization free energy of solvation -78.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds