Wall clock time and date at job start Tue Mar 31 2020 17:20:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47202 * 1 3 3 C 1.17402 * 179.97438 * 2 1 4 4 C 1.43199 * 179.97438 * 312.74555 * 3 2 1 5 5 O 1.21618 * 119.99674 * 186.27823 * 4 3 2 6 6 N 1.34776 * 120.00399 * 6.27923 * 4 3 2 7 7 C 1.47777 * 134.41014 * 180.02562 * 6 4 3 8 8 C 1.52937 * 85.80852 * 156.07350 * 7 6 4 9 9 C 1.47768 * 134.40920 * 359.97438 * 6 4 3 10 10 C 1.54002 * 115.15435 * 266.50687 * 8 7 6 11 11 C 1.55478 * 100.78463 * 194.48739 * 10 8 7 12 12 C 1.54474 * 102.36907 * 33.10529 * 11 10 8 13 13 H 1.08992 * 109.90555 * 98.19631 * 12 11 10 14 14 C 1.50693 * 109.83255 * 219.13448 * 12 11 10 15 15 O 1.21284 * 120.00241 * 114.57583 * 14 12 11 16 16 N 1.34781 * 120.00201 * 294.57869 * 14 12 11 17 17 C 1.47579 * 134.49446 * 180.02562 * 16 14 12 18 18 C 1.53950 * 86.11621 * 204.65755 * 17 16 14 19 19 C 1.50698 * 113.74185 * 221.94108 * 18 17 16 20 20 H 1.08004 * 119.99782 * 358.07289 * 19 18 17 21 21 C 1.37878 * 120.00154 * 178.07233 * 19 18 17 22 22 N 1.31517 * 119.99673 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00171 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47199 * 90.00222 * 23 21 19 25 25 H 1.48497 * 109.47283 * 210.00257 * 23 21 19 26 26 H 1.48499 * 109.47112 * 330.00381 * 23 21 19 27 27 C 1.47925 * 134.49765 * 0.02608 * 16 14 12 28 28 O 1.42537 * 116.18915 * 141.02815 * 8 7 6 29 29 H 1.09000 * 109.46676 * 220.97355 * 1 2 3 30 30 H 1.08997 * 109.47303 * 340.97734 * 1 2 3 31 31 H 1.09004 * 109.46797 * 100.98079 * 1 2 3 32 32 H 1.09000 * 113.81690 * 41.85027 * 7 6 4 33 33 H 1.09003 * 113.92407 * 270.31315 * 7 6 4 34 34 H 1.09002 * 113.82063 * 89.70001 * 9 6 4 35 35 H 1.09008 * 113.82015 * 318.14177 * 9 6 4 36 36 H 1.09002 * 111.15257 * 312.36925 * 10 8 7 37 37 H 1.09005 * 111.15441 * 76.60860 * 10 8 7 38 38 H 1.09004 * 110.82829 * 274.89009 * 11 10 8 39 39 H 1.09000 * 110.82817 * 151.32295 * 11 10 8 40 40 H 1.09003 * 113.77049 * 90.35821 * 17 16 14 41 41 H 1.08999 * 113.87175 * 318.96854 * 17 16 14 42 42 H 1.09002 * 113.74276 * 90.74001 * 18 17 16 43 43 H 0.96999 * 119.99516 * 179.97438 * 22 21 19 44 44 H 1.09006 * 113.87423 * 41.08470 * 27 16 14 45 45 H 1.08997 * 113.77410 * 269.58641 * 27 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4720 0.0000 0.0000 3 6 2.6460 0.0005 0.0000 4 6 4.0780 0.0007 0.0005 5 8 4.6859 1.0478 0.1159 6 7 4.7522 -1.1593 -0.1270 7 6 6.1836 -1.5246 -0.1662 8 6 5.7282 -2.9070 0.3034 9 6 4.3554 -2.5742 -0.2823 10 6 5.7534 -3.1215 1.8282 11 6 5.6201 -4.6686 1.9066 12 6 6.3708 -5.1301 0.6378 13 1 7.3871 -5.4279 0.8955 14 6 5.6432 -6.2889 0.0063 15 8 5.1379 -6.1634 -1.0891 16 7 5.5539 -7.4648 0.6589 17 6 4.9391 -8.7718 0.3558 18 6 4.8781 -8.9788 1.8801 19 6 5.2587 -10.3692 2.3193 20 1 5.5093 -11.1185 1.5829 21 6 5.2869 -10.6849 3.6611 22 7 4.9812 -9.7726 4.5578 23 14 5.7579 -12.4086 4.2055 24 1 7.2268 -12.4782 4.4126 25 1 5.0629 -12.7335 5.4769 26 1 5.3587 -13.3844 3.1597 27 6 6.0327 -7.9639 1.9665 28 8 6.4044 -4.0215 -0.2732 29 1 -0.3633 -0.7759 0.6739 30 1 -0.3634 0.9715 0.3349 31 1 -0.3633 -0.1958 -1.0089 32 1 6.7941 -0.9912 0.5623 33 1 6.6138 -1.5194 -1.1678 34 1 4.2321 -2.8855 -1.3196 35 1 3.5218 -2.8702 0.3547 36 1 6.6975 -2.7858 2.2571 37 1 4.9079 -2.6291 2.3087 38 1 4.5733 -4.9699 1.8685 39 1 6.1032 -5.0542 2.8044 40 1 5.6082 -9.4641 -0.1552 41 1 3.9598 -8.6995 -0.1173 42 1 3.9508 -8.6288 2.3337 43 1 5.0007 -9.9948 5.5018 44 1 5.9259 -7.2451 2.7790 45 1 7.0220 -8.4196 1.9274 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271094985.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:20:26 Heat of formation + Delta-G solvation = 15.598157 kcal Electronic energy + Delta-G solvation = -28045.866353 eV Core-core repulsion = 24032.826395 eV Total energy + Delta-G solvation = -4013.039958 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.35589 -39.70586 -38.79192 -37.26193 -36.33548 -34.53439 -32.82158 -32.36756 -30.76319 -29.54100 -28.63026 -26.78844 -26.69595 -25.20380 -24.86559 -22.57970 -22.29041 -20.46914 -19.80281 -18.40096 -18.22238 -17.36896 -16.86155 -16.54147 -16.40491 -16.17206 -15.45880 -15.19165 -14.86932 -14.69982 -14.42988 -14.20608 -14.01931 -13.89051 -13.58710 -13.43140 -13.34279 -13.03252 -12.75522 -12.29929 -12.09643 -12.03405 -11.69556 -11.65689 -11.41625 -11.30804 -11.06258 -11.02441 -10.81604 -10.79279 -10.62793 -10.49070 -10.48353 -10.11436 -9.54817 -9.33424 -9.07985 -8.87806 -8.64467 -7.93737 -6.25716 -4.31011 1.28892 1.88098 2.53575 2.96378 3.17342 3.18795 3.26990 3.28986 3.32489 3.64613 3.75759 4.05004 4.21587 4.27547 4.34114 4.72731 4.78420 4.89111 5.04769 5.06145 5.06716 5.08194 5.12538 5.19863 5.26064 5.30103 5.32619 5.42870 5.51717 5.56309 5.58928 5.78860 5.90608 5.98819 6.11924 6.20440 6.31688 6.46926 6.53294 6.68780 6.83079 6.95790 7.23461 7.46939 7.72128 7.74696 8.08714 8.40719 8.66951 8.72403 9.36309 10.83897 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.017484 B = 0.002411 C = 0.002316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1601.065236 B =11609.408873 C =12086.331079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 C -0.077 4.077 3 C -0.229 4.229 4 C 0.662 3.338 5 O -0.526 6.526 6 N -0.632 5.632 7 C 0.126 3.874 8 C 0.071 3.929 9 C 0.095 3.905 10 C -0.126 4.126 11 C -0.141 4.141 12 C 0.070 3.930 13 H 0.107 0.893 14 C 0.513 3.487 15 O -0.550 6.550 16 N -0.638 5.638 17 C 0.105 3.895 18 C 0.035 3.965 19 C -0.520 4.520 20 H 0.063 0.937 21 C 0.068 3.932 22 N -0.887 5.887 23 Si 0.895 3.105 24 H -0.279 1.279 25 H -0.286 1.286 26 H -0.272 1.272 27 C 0.102 3.898 28 O -0.327 6.327 29 H 0.093 0.907 30 H 0.090 0.910 31 H 0.093 0.907 32 H 0.096 0.904 33 H 0.100 0.900 34 H 0.103 0.897 35 H 0.088 0.912 36 H 0.091 0.909 37 H 0.089 0.911 38 H 0.085 0.915 39 H 0.099 0.901 40 H 0.074 0.926 41 H 0.061 0.939 42 H 0.063 0.937 43 H 0.264 0.736 44 H 0.066 0.934 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.805 14.848 -4.095 15.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.080 4.080 3 C -0.232 4.232 4 C 0.452 3.548 5 O -0.404 6.404 6 N -0.369 5.369 7 C 0.004 3.996 8 C 0.030 3.970 9 C -0.028 4.028 10 C -0.163 4.163 11 C -0.178 4.178 12 C 0.009 3.991 13 H 0.125 0.875 14 C 0.301 3.699 15 O -0.429 6.429 16 N -0.374 5.374 17 C -0.017 4.017 18 C 0.016 3.984 19 C -0.558 4.558 20 H 0.081 0.919 21 C -0.135 4.135 22 N -0.524 5.524 23 Si 0.722 3.278 24 H -0.205 1.205 25 H -0.211 1.211 26 H -0.197 1.197 27 C -0.020 4.020 28 O -0.243 6.243 29 H 0.112 0.888 30 H 0.109 0.891 31 H 0.111 0.889 32 H 0.114 0.886 33 H 0.118 0.882 34 H 0.121 0.879 35 H 0.107 0.893 36 H 0.110 0.890 37 H 0.108 0.892 38 H 0.104 0.896 39 H 0.118 0.882 40 H 0.092 0.908 41 H 0.079 0.921 42 H 0.082 0.918 43 H 0.074 0.926 44 H 0.084 0.916 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -2.735 15.869 -4.699 16.774 hybrid contribution 0.238 -0.995 0.502 1.140 sum -2.497 14.874 -4.197 15.655 Atomic orbital electron populations 1.19159 0.83339 1.04181 1.04242 1.22732 0.93851 0.97698 0.93701 1.20456 0.92253 1.04120 1.06372 1.14059 0.82395 0.81849 0.76463 1.90862 1.68897 1.30253 1.50367 1.49476 1.09301 1.06251 1.71822 1.23204 0.82673 0.90497 1.03207 1.23416 0.92502 0.87453 0.93656 1.23710 0.98399 0.77544 1.03147 1.22916 1.04214 0.96168 0.93046 1.23131 1.02395 0.94700 0.97615 1.22677 1.00566 0.86797 0.89087 0.87497 1.20403 0.80882 0.83500 0.85081 1.90646 1.48611 1.83293 1.20333 1.50544 1.55006 1.10001 1.21824 1.23490 0.96522 0.80726 1.00959 1.20483 0.94730 0.94830 0.88375 1.20976 1.47199 0.95597 0.92024 0.91859 1.25009 0.94477 0.97304 0.96735 1.69936 1.47445 1.33613 1.01382 0.86544 0.78632 0.84367 0.78216 1.20513 1.21135 1.19711 1.23849 1.01039 0.95771 0.81361 1.88401 1.74606 1.19655 1.41643 0.88812 0.89141 0.88874 0.88600 0.88168 0.87905 0.89341 0.89025 0.89219 0.89634 0.88239 0.90763 0.92082 0.91848 0.92630 0.91593 0.90570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.27 10.32 34.37 0.35 0.08 16 2 C -0.08 -0.77 14.13 -37.12 -0.52 -1.29 16 3 C -0.23 -2.88 13.34 -38.84 -0.52 -3.40 16 4 C 0.66 9.32 7.88 -14.33 -0.11 9.20 16 5 O -0.53 -8.94 17.81 5.26 0.09 -8.85 16 6 N -0.63 -7.67 3.60 -186.57 -0.67 -8.34 16 7 C 0.13 1.34 8.39 -3.38 -0.03 1.31 16 8 C 0.07 0.82 1.47 -90.32 -0.13 0.68 16 9 C 0.09 1.10 8.05 -3.39 -0.03 1.07 16 10 C -0.13 -1.25 6.39 -24.89 -0.16 -1.41 16 11 C -0.14 -1.67 5.83 -24.64 -0.14 -1.81 16 12 C 0.07 0.99 3.74 -27.11 -0.10 0.89 16 13 H 0.11 1.38 8.14 -51.93 -0.42 0.95 16 14 C 0.51 9.46 7.26 -10.99 -0.08 9.38 16 15 O -0.55 -11.96 17.25 -14.06 -0.24 -12.20 16 16 N -0.64 -12.00 3.60 -178.10 -0.64 -12.64 16 17 C 0.10 2.06 8.39 -2.97 -0.02 2.03 16 18 C 0.03 0.76 3.60 -90.83 -0.33 0.44 16 19 C -0.52 -12.57 8.77 -34.44 -0.30 -12.87 16 20 H 0.06 1.51 7.81 -52.48 -0.41 1.10 16 21 C 0.07 1.69 5.46 -17.82 -0.10 1.59 16 22 N -0.89 -22.83 13.29 55.43 0.74 -22.09 16 23 Si 0.89 19.33 29.54 -169.99 -5.02 14.30 16 24 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 25 H -0.29 -6.21 7.11 56.52 0.40 -5.81 16 26 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 27 C 0.10 1.94 7.98 -2.76 -0.02 1.92 16 28 O -0.33 -4.69 10.38 -54.85 -0.57 -5.26 16 29 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.09 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.10 0.90 8.11 -51.93 -0.42 0.48 16 33 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 35 H 0.09 0.96 8.11 -51.92 -0.42 0.54 16 36 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.09 0.84 8.05 -51.93 -0.42 0.42 16 38 H 0.08 1.12 7.84 -51.93 -0.41 0.71 16 39 H 0.10 1.09 7.53 -51.93 -0.39 0.69 16 40 H 0.07 1.42 8.09 -51.93 -0.42 1.00 16 41 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 42 H 0.06 1.50 8.14 -51.93 -0.42 1.08 16 43 H 0.26 6.52 8.31 -40.82 -0.34 6.18 16 44 H 0.07 1.20 7.02 -51.93 -0.36 0.83 16 45 H 0.08 1.45 8.09 -51.93 -0.42 1.03 16 LS Contribution 390.04 15.07 5.88 5.88 Total: -1.00 -31.59 390.04 -9.30 -40.89 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: -6.61 Total: 0.49 kcal Atomic # 6 Polarization: 10.06 SS G_CDS: -2.25 Total: 7.82 kcal Atomic # 7 Polarization: -42.50 SS G_CDS: -0.58 Total: -43.07 kcal Atomic # 8 Polarization: -25.59 SS G_CDS: -0.72 Total: -26.31 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: -5.02 Total: 14.30 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -31.59 -9.30 -40.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271094985.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.488 kcal (2) G-P(sol) polarization free energy of solvation -31.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.890 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds