Wall clock time and date at job start Tue Mar 31 2020 17:20:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47202 * 1 3 3 C 1.17402 * 179.97438 * 2 1 4 4 C 1.43199 * 179.97438 * 312.74555 * 3 2 1 5 5 O 1.21618 * 119.99674 * 186.27823 * 4 3 2 6 6 N 1.34776 * 120.00399 * 6.27923 * 4 3 2 7 7 C 1.47777 * 134.41014 * 180.02562 * 6 4 3 8 8 C 1.52937 * 85.80852 * 156.07350 * 7 6 4 9 9 C 1.47768 * 134.40920 * 359.97438 * 6 4 3 10 10 C 1.54002 * 115.15435 * 266.50687 * 8 7 6 11 11 C 1.55478 * 100.78463 * 194.48739 * 10 8 7 12 12 C 1.54474 * 102.36907 * 33.10529 * 11 10 8 13 13 H 1.08992 * 109.90555 * 98.19631 * 12 11 10 14 14 C 1.50693 * 109.83255 * 219.13448 * 12 11 10 15 15 O 1.21284 * 120.00241 * 114.57583 * 14 12 11 16 16 N 1.34781 * 120.00201 * 294.57869 * 14 12 11 17 17 C 1.47579 * 134.49446 * 180.02562 * 16 14 12 18 18 C 1.53950 * 86.11621 * 204.65755 * 17 16 14 19 19 C 1.50698 * 113.74185 * 221.94108 * 18 17 16 20 20 H 1.08004 * 119.99782 * 358.07289 * 19 18 17 21 21 C 1.37878 * 120.00154 * 178.07233 * 19 18 17 22 22 N 1.31517 * 119.99673 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00171 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47199 * 90.00222 * 23 21 19 25 25 H 1.48497 * 109.47283 * 210.00257 * 23 21 19 26 26 H 1.48499 * 109.47112 * 330.00381 * 23 21 19 27 27 C 1.47925 * 134.49765 * 0.02608 * 16 14 12 28 28 O 1.42537 * 116.18915 * 141.02815 * 8 7 6 29 29 H 1.09000 * 109.46676 * 220.97355 * 1 2 3 30 30 H 1.08997 * 109.47303 * 340.97734 * 1 2 3 31 31 H 1.09004 * 109.46797 * 100.98079 * 1 2 3 32 32 H 1.09000 * 113.81690 * 41.85027 * 7 6 4 33 33 H 1.09003 * 113.92407 * 270.31315 * 7 6 4 34 34 H 1.09002 * 113.82063 * 89.70001 * 9 6 4 35 35 H 1.09008 * 113.82015 * 318.14177 * 9 6 4 36 36 H 1.09002 * 111.15257 * 312.36925 * 10 8 7 37 37 H 1.09005 * 111.15441 * 76.60860 * 10 8 7 38 38 H 1.09004 * 110.82829 * 274.89009 * 11 10 8 39 39 H 1.09000 * 110.82817 * 151.32295 * 11 10 8 40 40 H 1.09003 * 113.77049 * 90.35821 * 17 16 14 41 41 H 1.08999 * 113.87175 * 318.96854 * 17 16 14 42 42 H 1.09002 * 113.74276 * 90.74001 * 18 17 16 43 43 H 0.96999 * 119.99516 * 179.97438 * 22 21 19 44 44 H 1.09006 * 113.87423 * 41.08470 * 27 16 14 45 45 H 1.08997 * 113.77410 * 269.58641 * 27 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4720 0.0000 0.0000 3 6 2.6460 0.0005 0.0000 4 6 4.0780 0.0007 0.0005 5 8 4.6859 1.0478 0.1159 6 7 4.7522 -1.1593 -0.1270 7 6 6.1836 -1.5246 -0.1662 8 6 5.7282 -2.9070 0.3034 9 6 4.3554 -2.5742 -0.2823 10 6 5.7534 -3.1215 1.8282 11 6 5.6201 -4.6686 1.9066 12 6 6.3708 -5.1301 0.6378 13 1 7.3871 -5.4279 0.8955 14 6 5.6432 -6.2889 0.0063 15 8 5.1379 -6.1634 -1.0891 16 7 5.5539 -7.4648 0.6589 17 6 4.9391 -8.7718 0.3558 18 6 4.8781 -8.9788 1.8801 19 6 5.2587 -10.3692 2.3193 20 1 5.5093 -11.1185 1.5829 21 6 5.2869 -10.6849 3.6611 22 7 4.9812 -9.7726 4.5578 23 14 5.7579 -12.4086 4.2055 24 1 7.2268 -12.4782 4.4126 25 1 5.0629 -12.7335 5.4769 26 1 5.3587 -13.3844 3.1597 27 6 6.0327 -7.9639 1.9665 28 8 6.4044 -4.0215 -0.2732 29 1 -0.3633 -0.7759 0.6739 30 1 -0.3634 0.9715 0.3349 31 1 -0.3633 -0.1958 -1.0089 32 1 6.7941 -0.9912 0.5623 33 1 6.6138 -1.5194 -1.1678 34 1 4.2321 -2.8855 -1.3196 35 1 3.5218 -2.8702 0.3547 36 1 6.6975 -2.7858 2.2571 37 1 4.9079 -2.6291 2.3087 38 1 4.5733 -4.9699 1.8685 39 1 6.1032 -5.0542 2.8044 40 1 5.6082 -9.4641 -0.1552 41 1 3.9598 -8.6995 -0.1173 42 1 3.9508 -8.6288 2.3337 43 1 5.0007 -9.9948 5.5018 44 1 5.9259 -7.2451 2.7790 45 1 7.0220 -8.4196 1.9274 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271094985.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:20:24 Heat of formation + Delta-G solvation = -3.080136 kcal Electronic energy + Delta-G solvation = -28046.676304 eV Core-core repulsion = 24032.826395 eV Total energy + Delta-G solvation = -4013.849909 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.36168 -41.04922 -40.02658 -38.65054 -37.60235 -35.29036 -34.61562 -33.43831 -31.83346 -30.78700 -29.56083 -27.99093 -27.60361 -26.83118 -26.40335 -23.66544 -23.20177 -21.99741 -20.81387 -19.83479 -19.19209 -18.82147 -18.24147 -17.78304 -17.56403 -17.28007 -16.83505 -16.52616 -16.08343 -15.86926 -15.74293 -15.21396 -14.83574 -14.65410 -14.54650 -14.40704 -14.34270 -14.22207 -13.98572 -13.94535 -13.30619 -13.16674 -13.08321 -12.95532 -12.79630 -12.74674 -12.51395 -12.34362 -12.22036 -11.98839 -11.75600 -11.40685 -11.39792 -11.29979 -11.11125 -11.04914 -10.56603 -10.28850 -10.05454 -9.52080 -8.13798 -6.23392 0.36935 1.02094 1.48436 1.52138 1.54922 1.59723 1.65802 1.86898 2.32043 2.48161 2.65437 2.83984 3.13528 3.17869 3.30888 3.31644 3.53981 3.87601 3.98986 4.13635 4.15272 4.25942 4.32789 4.38436 4.43166 4.47820 4.50939 4.57992 4.62446 4.66543 4.69908 4.73670 4.74910 4.77283 4.83559 4.91126 4.97593 4.99563 5.07304 5.11523 5.64666 5.76754 5.85720 6.17490 6.24972 6.26582 6.73218 6.83396 6.89656 7.17170 7.46218 8.95495 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.017484 B = 0.002411 C = 0.002316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1601.065236 B =11609.408873 C =12086.331079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C -0.040 4.040 3 C -0.296 4.296 4 C 0.660 3.340 5 O -0.568 6.568 6 N -0.628 5.628 7 C 0.126 3.874 8 C 0.069 3.931 9 C 0.094 3.906 10 C -0.114 4.114 11 C -0.136 4.136 12 C 0.074 3.926 13 H 0.128 0.872 14 C 0.509 3.491 15 O -0.588 6.588 16 N -0.636 5.636 17 C 0.106 3.894 18 C 0.025 3.975 19 C -0.531 4.531 20 H 0.062 0.938 21 C 0.026 3.974 22 N -0.913 5.913 23 Si 0.951 3.049 24 H -0.274 1.274 25 H -0.288 1.288 26 H -0.271 1.271 27 C 0.119 3.881 28 O -0.342 6.342 29 H 0.112 0.888 30 H 0.111 0.889 31 H 0.113 0.887 32 H 0.112 0.888 33 H 0.104 0.896 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.115 0.885 37 H 0.097 0.903 38 H 0.070 0.930 39 H 0.114 0.886 40 H 0.080 0.920 41 H 0.060 0.940 42 H 0.039 0.961 43 H 0.264 0.736 44 H 0.077 0.923 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.851 15.078 -3.395 15.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.043 4.043 3 C -0.299 4.299 4 C 0.452 3.548 5 O -0.449 6.449 6 N -0.363 5.363 7 C 0.004 3.996 8 C 0.028 3.972 9 C -0.028 4.028 10 C -0.152 4.152 11 C -0.174 4.174 12 C 0.014 3.986 13 H 0.146 0.854 14 C 0.299 3.701 15 O -0.469 6.469 16 N -0.371 5.371 17 C -0.016 4.016 18 C 0.006 3.994 19 C -0.569 4.569 20 H 0.080 0.920 21 C -0.175 4.175 22 N -0.551 5.551 23 Si 0.777 3.223 24 H -0.200 1.200 25 H -0.214 1.214 26 H -0.196 1.196 27 C -0.003 4.003 28 O -0.259 6.259 29 H 0.130 0.870 30 H 0.129 0.871 31 H 0.131 0.869 32 H 0.130 0.870 33 H 0.122 0.878 34 H 0.111 0.889 35 H 0.113 0.887 36 H 0.133 0.867 37 H 0.116 0.884 38 H 0.089 0.911 39 H 0.133 0.867 40 H 0.099 0.901 41 H 0.078 0.922 42 H 0.057 0.943 43 H 0.073 0.927 44 H 0.096 0.904 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -2.773 16.074 -4.004 16.796 hybrid contribution 0.110 -1.094 0.204 1.118 sum -2.663 14.980 -3.800 15.683 Atomic orbital electron populations 1.19554 0.79906 1.05962 1.05931 1.23773 0.94846 0.94961 0.90681 1.20533 0.92621 1.07227 1.09502 1.14286 0.83162 0.81611 0.75757 1.90816 1.69924 1.31509 1.52658 1.49494 1.09998 1.05978 1.70861 1.23335 0.82266 0.89935 1.04019 1.23553 0.92005 0.86967 0.94702 1.23713 0.99068 0.77267 1.02797 1.22934 1.05860 0.94620 0.91756 1.23112 1.01274 0.96094 0.96878 1.22723 1.01134 0.85342 0.89437 0.85433 1.21213 0.80246 0.84025 0.84600 1.90624 1.50306 1.83869 1.22113 1.50496 1.54865 1.10024 1.21739 1.23389 0.96878 0.81680 0.99614 1.20390 0.94748 0.94665 0.89642 1.21256 1.46780 0.96663 0.92179 0.92017 1.25638 0.94665 1.00283 0.96904 1.70018 1.48545 1.35047 1.01516 0.85657 0.78394 0.80700 0.77502 1.19970 1.21362 1.19572 1.23612 0.99935 0.95054 0.81720 1.88393 1.74780 1.20219 1.42503 0.86987 0.87073 0.86928 0.86956 0.87752 0.88922 0.88723 0.86682 0.88412 0.91140 0.86717 0.90148 0.92179 0.94328 0.92662 0.90433 0.90172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.42 10.32 70.18 0.72 0.30 16 2 C -0.04 -0.74 14.13 31.13 0.44 -0.30 16 3 C -0.30 -7.46 13.34 30.01 0.40 -7.06 16 4 C 0.66 18.97 7.88 85.49 0.67 19.64 16 5 O -0.57 -19.89 17.81 -4.09 -0.07 -19.96 16 6 N -0.63 -15.17 3.60 -868.56 -3.13 -18.30 16 7 C 0.13 2.55 8.39 86.11 0.72 3.28 16 8 C 0.07 1.49 1.47 -10.45 -0.02 1.48 16 9 C 0.09 2.17 8.05 86.11 0.69 2.86 16 10 C -0.11 -2.01 6.39 31.79 0.20 -1.81 16 11 C -0.14 -2.96 5.83 31.95 0.19 -2.77 16 12 C 0.07 2.00 3.74 30.35 0.11 2.11 16 13 H 0.13 2.95 8.14 -2.39 -0.02 2.93 16 14 C 0.51 18.45 7.26 87.65 0.64 19.08 16 15 O -0.59 -25.64 17.25 15.71 0.27 -25.37 16 16 N -0.64 -23.51 3.60 -835.78 -3.01 -26.52 16 17 C 0.11 4.18 8.39 86.49 0.73 4.91 16 18 C 0.02 1.08 3.60 -10.87 -0.04 1.04 16 19 C -0.53 -25.49 8.77 25.60 0.22 -25.27 16 20 H 0.06 2.92 7.81 -2.91 -0.02 2.90 16 21 C 0.03 1.26 5.46 84.65 0.46 1.72 16 22 N -0.91 -46.71 13.29 21.45 0.28 -46.42 16 23 Si 0.95 39.12 29.54 68.60 2.03 41.15 16 24 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 25 H -0.29 -11.86 7.11 99.48 0.71 -11.15 16 26 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 27 C 0.12 4.40 7.98 86.43 0.69 5.09 16 28 O -0.34 -9.44 10.38 -130.22 -1.35 -10.79 16 29 H 0.11 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.11 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.11 0.48 8.14 -2.39 -0.02 0.46 16 32 H 0.11 1.92 8.11 -2.39 -0.02 1.90 16 33 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 34 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 35 H 0.09 2.03 8.11 -2.38 -0.02 2.01 16 36 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.10 1.61 8.05 -2.38 -0.02 1.59 16 38 H 0.07 1.76 7.84 -2.39 -0.02 1.75 16 39 H 0.11 2.18 7.53 -2.39 -0.02 2.16 16 40 H 0.08 3.05 8.09 -2.39 -0.02 3.03 16 41 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 42 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 43 H 0.26 12.95 8.31 -92.71 -0.77 12.18 16 44 H 0.08 2.70 7.02 -2.38 -0.02 2.68 16 45 H 0.08 2.94 8.09 -2.39 -0.02 2.92 16 Total: -1.00 -69.06 390.04 2.86 -66.20 By element: Atomic # 1 Polarization: 14.71 SS G_CDS: 1.00 Total: 15.71 kcal Atomic # 6 Polarization: 17.47 SS G_CDS: 6.84 Total: 24.31 kcal Atomic # 7 Polarization: -85.39 SS G_CDS: -5.85 Total: -91.25 kcal Atomic # 8 Polarization: -54.96 SS G_CDS: -1.15 Total: -56.12 kcal Atomic # 14 Polarization: 39.12 SS G_CDS: 2.03 Total: 41.15 kcal Total: -69.06 2.86 -66.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271094985.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.118 kcal (2) G-P(sol) polarization free energy of solvation -69.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds