Wall clock time and date at job start Tue Mar 31 2020 17:25:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53000 * 109.47013 * 2 1 4 4 H 1.08996 * 109.87511 * 53.75302 * 3 2 1 5 5 C 1.54324 * 110.01489 * 292.65127 * 3 2 1 6 6 C 1.55154 * 102.94519 * 218.31890 * 5 3 2 7 7 C 1.54693 * 101.67668 * 35.33388 * 6 5 3 8 8 N 1.47026 * 109.87943 * 174.76657 * 3 2 1 9 9 C 1.34774 * 125.64896 * 298.47483 * 8 3 2 10 10 O 1.21356 * 120.00138 * 4.75951 * 9 8 3 11 11 C 1.49320 * 119.99871 * 184.75690 * 9 8 3 12 12 O 1.21387 * 120.00307 * 0.02562 * 11 9 8 13 13 N 1.34774 * 119.99871 * 180.02562 * 11 9 8 14 14 C 1.39750 * 119.99908 * 175.01993 * 13 11 9 15 15 C 1.38995 * 120.00590 * 147.03772 * 14 13 11 16 16 C 1.37966 * 119.99026 * 180.02562 * 15 14 13 17 17 C 1.38932 * 120.00978 * 359.97438 * 16 15 14 18 18 O 1.35756 * 119.99579 * 179.97438 * 17 16 15 19 19 C 1.34808 * 116.99800 * 5.43295 * 18 17 16 20 20 H 1.07996 * 119.99932 * 354.88651 * 19 18 17 21 21 C 1.38651 * 120.00042 * 174.89498 * 19 18 17 22 22 N 1.31562 * 119.99913 * 359.97438 * 21 19 18 23 23 Si 1.86794 * 120.00134 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47074 * 359.97438 * 23 21 19 25 25 H 1.48493 * 109.47363 * 119.99999 * 23 21 19 26 26 H 1.48500 * 109.47020 * 240.00339 * 23 21 19 27 27 C 1.38939 * 120.01413 * 0.26456 * 17 16 15 28 28 C 1.37970 * 120.00324 * 359.48248 * 27 17 16 29 29 H 1.09004 * 109.46985 * 305.15518 * 1 2 3 30 30 H 1.09002 * 109.47358 * 65.15460 * 1 2 3 31 31 H 1.08997 * 109.47486 * 185.15523 * 1 2 3 32 32 H 1.09004 * 109.47294 * 240.00502 * 2 1 3 33 33 H 1.08999 * 109.47256 * 120.00497 * 2 1 3 34 34 H 1.09008 * 110.71908 * 336.68339 * 5 3 2 35 35 H 1.08998 * 110.71793 * 99.77551 * 5 3 2 36 36 H 1.08999 * 111.00451 * 153.57801 * 6 5 3 37 37 H 1.09001 * 111.00210 * 277.39144 * 6 5 3 38 38 H 1.09001 * 110.39295 * 204.36141 * 7 6 5 39 39 H 1.09002 * 110.23299 * 82.11533 * 7 6 5 40 40 H 0.96994 * 119.99944 * 355.02358 * 13 11 9 41 41 H 1.08005 * 120.00287 * 0.03770 * 15 14 13 42 42 H 1.08001 * 119.99435 * 179.97438 * 16 15 14 43 43 H 0.96994 * 119.99942 * 179.97438 * 22 21 19 44 44 H 1.07998 * 120.00235 * 179.71970 * 27 17 16 45 45 H 1.08002 * 120.00202 * 180.27799 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5920 1.9939 0.8267 5 6 1.6895 2.1266 -1.3382 6 6 2.9453 2.9912 -1.6259 7 6 4.0770 2.0929 -1.0734 8 7 3.5047 1.4549 0.1261 9 6 4.2075 0.9689 1.1684 10 8 3.6356 0.3905 2.0690 11 6 5.6899 1.1422 1.2150 12 8 6.2619 1.7212 0.3144 13 7 6.3928 0.6558 2.2570 14 6 7.7885 0.7252 2.2516 15 6 8.4806 0.8953 3.4450 16 6 9.8585 0.9644 3.4393 17 6 10.5543 0.8634 2.2410 18 8 11.9102 0.9319 2.2357 19 6 12.5250 0.9851 3.4343 20 1 11.9393 1.0557 4.3389 21 6 13.9092 0.9495 3.5056 22 7 14.6226 0.8632 2.4036 23 14 14.7611 1.0239 5.1663 24 1 13.7415 1.1181 6.2419 25 1 15.5746 -0.2030 5.3608 26 1 15.6443 2.2167 5.2165 27 6 9.8626 0.6983 1.0474 28 6 8.4849 0.6239 1.0530 29 1 -0.3633 0.5917 0.8402 30 1 -0.3634 0.4318 -0.9325 31 1 -0.3634 -1.0235 0.0923 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 1.5434 1.3851 -2.1238 35 1 0.8034 2.7524 -1.2310 36 1 3.0659 3.1610 -2.6958 37 1 2.9012 3.9364 -1.0849 38 1 4.9441 2.6964 -0.8050 39 1 4.3526 1.3379 -1.8097 40 1 5.9299 0.2574 3.0105 41 1 7.9397 0.9732 4.3766 42 1 10.3963 1.0970 4.3665 43 1 15.5910 0.8386 2.4535 44 1 10.4035 0.6243 0.1156 45 1 7.9475 0.4911 0.1257 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318423044.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:25:45 Heat of formation + Delta-G solvation = -61.771279 kcal Electronic energy + Delta-G solvation = -27727.093198 eV Core-core repulsion = 23710.698249 eV Total energy + Delta-G solvation = -4016.394948 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.10465 -39.69981 -38.65363 -37.78083 -36.60924 -34.19399 -33.71548 -32.23751 -31.87593 -30.29747 -28.44481 -28.13527 -25.83881 -25.19067 -23.50688 -22.49582 -22.31497 -21.42927 -20.59040 -19.67446 -18.14406 -17.90209 -17.34130 -17.09693 -16.33953 -16.13610 -15.63851 -15.04618 -14.66220 -14.59853 -14.48828 -14.06434 -14.01605 -13.73083 -13.60151 -13.46090 -13.39018 -12.88249 -12.74031 -12.57411 -12.45508 -12.01752 -11.99223 -11.79212 -11.63755 -11.58941 -11.50975 -11.26358 -11.09928 -11.05649 -10.79693 -10.72198 -10.46352 -9.76390 -9.49139 -9.29800 -8.97816 -8.76856 -8.27871 -7.00399 -6.49182 -4.06813 1.25739 2.12000 2.13491 2.31492 3.09344 3.11855 3.17478 3.22427 3.43205 3.93459 4.14351 4.21958 4.41436 4.43613 4.52654 4.77700 4.82564 4.93676 5.03711 5.05540 5.13706 5.25383 5.31673 5.38466 5.50485 5.53376 5.57361 5.65826 5.69106 5.70304 5.78853 5.80563 5.90760 6.04912 6.10422 6.12590 6.18462 6.71157 6.73386 6.82535 7.01451 7.05299 7.16855 7.30066 7.42935 7.66403 7.72452 7.95251 8.09421 8.96139 9.65331 10.68545 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.033147 B = 0.002072 C = 0.001996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.527723 B =13508.130113 C =14023.904862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.138 4.138 3 C 0.136 3.864 4 H 0.079 0.921 5 C -0.128 4.128 6 C -0.137 4.137 7 C 0.090 3.910 8 N -0.588 5.588 9 C 0.525 3.475 10 O -0.523 6.523 11 C 0.499 3.501 12 O -0.505 6.505 13 N -0.624 5.624 14 C 0.027 3.973 15 C -0.082 4.082 16 C -0.219 4.219 17 C 0.150 3.850 18 O -0.173 6.173 19 C -0.392 4.392 20 H 0.094 0.906 21 C 0.039 3.961 22 N -0.860 5.860 23 Si 0.942 3.058 24 H -0.266 1.266 25 H -0.276 1.276 26 H -0.276 1.276 27 C -0.178 4.178 28 C -0.064 4.064 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.057 0.943 32 H 0.064 0.936 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.083 0.917 36 H 0.087 0.913 37 H 0.076 0.924 38 H 0.109 0.891 39 H 0.072 0.928 40 H 0.413 0.587 41 H 0.113 0.887 42 H 0.133 0.867 43 H 0.270 0.730 44 H 0.123 0.877 45 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.370 1.340 -5.576 26.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.177 4.177 3 C 0.033 3.967 4 H 0.097 0.903 5 C -0.165 4.165 6 C -0.175 4.175 7 C -0.032 4.032 8 N -0.323 5.323 9 C 0.308 3.692 10 O -0.399 6.399 11 C 0.280 3.720 12 O -0.381 6.381 13 N -0.270 5.270 14 C -0.066 4.066 15 C -0.102 4.102 16 C -0.239 4.239 17 C 0.096 3.904 18 O -0.076 6.076 19 C -0.468 4.468 20 H 0.111 0.889 21 C -0.166 4.166 22 N -0.494 5.494 23 Si 0.767 3.233 24 H -0.191 1.191 25 H -0.201 1.201 26 H -0.201 1.201 27 C -0.197 4.197 28 C -0.084 4.084 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.099 0.901 34 H 0.098 0.902 35 H 0.101 0.899 36 H 0.105 0.895 37 H 0.095 0.905 38 H 0.127 0.873 39 H 0.091 0.909 40 H 0.250 0.750 41 H 0.131 0.869 42 H 0.151 0.849 43 H 0.080 0.920 44 H 0.141 0.859 45 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -24.809 1.396 -5.925 25.545 hybrid contribution 0.168 -0.153 1.254 1.275 sum -24.641 1.242 -4.670 25.111 Atomic orbital electron populations 1.21706 0.94948 1.02013 1.01782 1.21931 0.96322 0.95915 1.03498 1.21792 0.79309 0.97065 0.98533 0.90285 1.22749 0.98552 0.99221 0.96023 1.22816 0.94127 0.98476 1.02055 1.22736 0.97858 0.96593 0.85988 1.48332 1.07251 1.57646 1.19030 1.19820 0.87918 0.79691 0.81744 1.90737 1.71329 1.40864 1.36953 1.19942 0.87602 0.80543 0.83894 1.90712 1.70776 1.39834 1.36792 1.42883 1.05618 1.57277 1.21174 1.17226 0.80232 1.14048 0.95053 1.20496 0.93990 1.00057 0.95676 1.20983 0.93278 1.10749 0.98905 1.19438 0.85116 0.92714 0.93180 1.83981 1.12899 1.78213 1.32533 1.21391 0.89834 1.52447 0.83137 0.88897 1.25314 0.95417 0.96466 0.99371 1.70048 1.06655 1.45549 1.27157 0.85629 0.79369 0.78283 0.80042 1.19057 1.20110 1.20125 1.20108 0.92814 1.10087 0.96737 1.20592 0.92962 0.98282 0.96553 0.92561 0.92616 0.92427 0.91738 0.90149 0.90211 0.89860 0.89484 0.90492 0.87259 0.90938 0.75024 0.86866 0.84903 0.91979 0.85940 0.85693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.68 37.15 0.36 -0.57 16 2 C -0.14 -1.17 5.41 -26.73 -0.14 -1.32 16 3 C 0.14 1.16 2.92 -66.95 -0.20 0.97 16 4 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 5 C -0.13 -0.74 5.72 -24.90 -0.14 -0.89 16 6 C -0.14 -0.88 7.07 -24.70 -0.17 -1.05 16 7 C 0.09 0.85 6.21 -2.64 -0.02 0.83 16 8 N -0.59 -6.44 3.07 -163.70 -0.50 -6.94 16 9 C 0.53 7.03 7.72 -11.65 -0.09 6.94 16 10 O -0.52 -7.67 15.27 5.49 0.08 -7.58 16 11 C 0.50 7.43 7.59 -11.65 -0.09 7.34 16 12 O -0.51 -8.31 11.35 5.46 0.06 -8.25 16 13 N -0.62 -9.34 5.32 -10.27 -0.05 -9.39 16 14 C 0.03 0.47 6.29 -83.69 -0.53 -0.05 16 15 C -0.08 -1.48 9.96 -39.40 -0.39 -1.87 16 16 C -0.22 -4.64 9.16 -39.42 -0.36 -5.00 16 17 C 0.15 3.58 6.65 -39.06 -0.26 3.32 16 18 O -0.17 -4.87 9.75 0.09 0.00 -4.87 16 19 C -0.39 -10.75 9.48 30.89 0.29 -10.46 16 20 H 0.09 2.34 5.20 -52.49 -0.27 2.07 16 21 C 0.04 1.06 5.49 -17.51 -0.10 0.96 16 22 N -0.86 -24.91 13.67 55.48 0.76 -24.15 16 23 Si 0.94 20.21 29.55 -169.99 -5.02 15.19 16 24 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 25 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 26 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 27 C -0.18 -3.80 9.98 -39.42 -0.39 -4.19 16 28 C -0.06 -1.22 8.65 -39.40 -0.34 -1.56 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.05 0.28 7.65 -51.93 -0.40 -0.12 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.54 8.02 -51.93 -0.42 0.12 16 33 H 0.08 0.88 6.55 -51.93 -0.34 0.54 16 34 H 0.08 0.42 7.78 -51.92 -0.40 0.01 16 35 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 36 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.11 1.24 5.90 -51.93 -0.31 0.93 16 39 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.41 5.31 8.29 -40.82 -0.34 4.97 16 41 H 0.11 1.68 8.06 -52.48 -0.42 1.26 16 42 H 0.13 2.78 5.63 -52.49 -0.30 2.48 16 43 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 44 H 0.12 2.52 8.06 -52.49 -0.42 2.10 16 45 H 0.13 2.26 6.37 -52.49 -0.33 1.93 16 LS Contribution 370.11 15.07 5.58 5.58 Total: -1.00 -31.64 370.11 -7.71 -39.35 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: -6.04 Total: 7.65 kcal Atomic # 6 Polarization: -4.02 SS G_CDS: -2.57 Total: -6.59 kcal Atomic # 7 Polarization: -40.68 SS G_CDS: 0.20 Total: -40.48 kcal Atomic # 8 Polarization: -20.85 SS G_CDS: 0.15 Total: -20.70 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.19 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.64 -7.71 -39.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318423044.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.424 kcal (2) G-P(sol) polarization free energy of solvation -31.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds