Wall clock time and date at job start Tue Mar 31 2020 17:25:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53000 * 109.47013 * 2 1 4 4 H 1.08996 * 109.87511 * 53.75302 * 3 2 1 5 5 C 1.54324 * 110.01489 * 292.65127 * 3 2 1 6 6 C 1.55154 * 102.94519 * 218.31890 * 5 3 2 7 7 C 1.54693 * 101.67668 * 35.33388 * 6 5 3 8 8 N 1.47026 * 109.87943 * 174.76657 * 3 2 1 9 9 C 1.34774 * 125.64896 * 298.47483 * 8 3 2 10 10 O 1.21356 * 120.00138 * 4.75951 * 9 8 3 11 11 C 1.49320 * 119.99871 * 184.75690 * 9 8 3 12 12 O 1.21387 * 120.00307 * 0.02562 * 11 9 8 13 13 N 1.34774 * 119.99871 * 180.02562 * 11 9 8 14 14 C 1.39750 * 119.99908 * 175.01993 * 13 11 9 15 15 C 1.38995 * 120.00590 * 147.03772 * 14 13 11 16 16 C 1.37966 * 119.99026 * 180.02562 * 15 14 13 17 17 C 1.38932 * 120.00978 * 359.97438 * 16 15 14 18 18 O 1.35756 * 119.99579 * 179.97438 * 17 16 15 19 19 C 1.34808 * 116.99800 * 5.43295 * 18 17 16 20 20 H 1.07996 * 119.99932 * 354.88651 * 19 18 17 21 21 C 1.38651 * 120.00042 * 174.89498 * 19 18 17 22 22 N 1.31562 * 119.99913 * 359.97438 * 21 19 18 23 23 Si 1.86794 * 120.00134 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47074 * 359.97438 * 23 21 19 25 25 H 1.48493 * 109.47363 * 119.99999 * 23 21 19 26 26 H 1.48500 * 109.47020 * 240.00339 * 23 21 19 27 27 C 1.38939 * 120.01413 * 0.26456 * 17 16 15 28 28 C 1.37970 * 120.00324 * 359.48248 * 27 17 16 29 29 H 1.09004 * 109.46985 * 305.15518 * 1 2 3 30 30 H 1.09002 * 109.47358 * 65.15460 * 1 2 3 31 31 H 1.08997 * 109.47486 * 185.15523 * 1 2 3 32 32 H 1.09004 * 109.47294 * 240.00502 * 2 1 3 33 33 H 1.08999 * 109.47256 * 120.00497 * 2 1 3 34 34 H 1.09008 * 110.71908 * 336.68339 * 5 3 2 35 35 H 1.08998 * 110.71793 * 99.77551 * 5 3 2 36 36 H 1.08999 * 111.00451 * 153.57801 * 6 5 3 37 37 H 1.09001 * 111.00210 * 277.39144 * 6 5 3 38 38 H 1.09001 * 110.39295 * 204.36141 * 7 6 5 39 39 H 1.09002 * 110.23299 * 82.11533 * 7 6 5 40 40 H 0.96994 * 119.99944 * 355.02358 * 13 11 9 41 41 H 1.08005 * 120.00287 * 0.03770 * 15 14 13 42 42 H 1.08001 * 119.99435 * 179.97438 * 16 15 14 43 43 H 0.96994 * 119.99942 * 179.97438 * 22 21 19 44 44 H 1.07998 * 120.00235 * 179.71970 * 27 17 16 45 45 H 1.08002 * 120.00202 * 180.27799 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5920 1.9939 0.8267 5 6 1.6895 2.1266 -1.3382 6 6 2.9453 2.9912 -1.6259 7 6 4.0770 2.0929 -1.0734 8 7 3.5047 1.4549 0.1261 9 6 4.2075 0.9689 1.1684 10 8 3.6356 0.3905 2.0690 11 6 5.6899 1.1422 1.2150 12 8 6.2619 1.7212 0.3144 13 7 6.3928 0.6558 2.2570 14 6 7.7885 0.7252 2.2516 15 6 8.4806 0.8953 3.4450 16 6 9.8585 0.9644 3.4393 17 6 10.5543 0.8634 2.2410 18 8 11.9102 0.9319 2.2357 19 6 12.5250 0.9851 3.4343 20 1 11.9393 1.0557 4.3389 21 6 13.9092 0.9495 3.5056 22 7 14.6226 0.8632 2.4036 23 14 14.7611 1.0239 5.1663 24 1 13.7415 1.1181 6.2419 25 1 15.5746 -0.2030 5.3608 26 1 15.6443 2.2167 5.2165 27 6 9.8626 0.6983 1.0474 28 6 8.4849 0.6239 1.0530 29 1 -0.3633 0.5917 0.8402 30 1 -0.3634 0.4318 -0.9325 31 1 -0.3634 -1.0235 0.0923 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 1.5434 1.3851 -2.1238 35 1 0.8034 2.7524 -1.2310 36 1 3.0659 3.1610 -2.6958 37 1 2.9012 3.9364 -1.0849 38 1 4.9441 2.6964 -0.8050 39 1 4.3526 1.3379 -1.8097 40 1 5.9299 0.2574 3.0105 41 1 7.9397 0.9732 4.3766 42 1 10.3963 1.0970 4.3665 43 1 15.5910 0.8386 2.4535 44 1 10.4035 0.6243 0.1156 45 1 7.9475 0.4911 0.1257 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318423044.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:25:44 Heat of formation + Delta-G solvation = -81.864248 kcal Electronic energy + Delta-G solvation = -27727.964494 eV Core-core repulsion = 23710.698249 eV Total energy + Delta-G solvation = -4017.266245 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.23071 -41.01188 -40.14094 -38.76171 -38.22589 -35.59668 -34.45569 -34.17152 -32.63141 -31.93866 -29.93991 -28.84180 -27.50617 -26.50478 -24.43809 -23.95217 -23.26479 -22.58001 -21.72085 -20.73048 -19.87449 -19.12128 -18.87802 -18.24087 -17.71269 -17.20919 -16.78005 -16.37727 -16.06037 -15.87000 -15.59973 -15.49856 -15.26031 -15.06630 -14.72037 -14.58559 -14.37389 -14.19035 -14.02907 -13.64260 -13.44399 -13.36255 -13.29031 -13.00643 -12.78237 -12.72302 -12.62828 -12.43400 -12.13907 -12.08196 -11.98530 -11.59635 -11.42523 -11.38270 -11.15761 -10.67525 -10.54436 -9.90580 -9.85745 -8.69249 -8.46744 -6.13822 0.01887 0.48752 0.69913 1.14329 1.37512 1.45265 1.55707 2.02618 2.18208 2.37513 2.79393 3.12413 3.17769 3.47746 3.59898 3.66151 3.85218 4.00247 4.06787 4.16805 4.21604 4.33814 4.44247 4.47256 4.50945 4.56021 4.61958 4.75282 4.90055 4.92323 4.98754 5.02242 5.09818 5.10973 5.13205 5.15895 5.23473 5.25460 5.33797 5.36052 5.44134 5.48762 5.62408 5.94981 6.01553 6.08030 6.19293 6.60074 6.85348 6.97726 7.76628 8.76319 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.033147 B = 0.002072 C = 0.001996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.527723 B =13508.130113 C =14023.904862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.135 4.135 3 C 0.128 3.872 4 H 0.077 0.923 5 C -0.117 4.117 6 C -0.128 4.128 7 C 0.083 3.917 8 N -0.584 5.584 9 C 0.525 3.475 10 O -0.539 6.539 11 C 0.501 3.499 12 O -0.520 6.520 13 N -0.621 5.621 14 C 0.053 3.947 15 C -0.074 4.074 16 C -0.220 4.220 17 C 0.113 3.887 18 O -0.227 6.227 19 C -0.412 4.412 20 H 0.107 0.893 21 C -0.024 4.024 22 N -0.919 5.919 23 Si 1.020 2.980 24 H -0.248 1.248 25 H -0.270 1.270 26 H -0.270 1.270 27 C -0.185 4.185 28 C -0.066 4.066 29 H 0.056 0.944 30 H 0.074 0.926 31 H 0.057 0.943 32 H 0.065 0.935 33 H 0.051 0.949 34 H 0.091 0.909 35 H 0.106 0.894 36 H 0.108 0.892 37 H 0.078 0.922 38 H 0.089 0.911 39 H 0.076 0.924 40 H 0.427 0.573 41 H 0.155 0.845 42 H 0.134 0.866 43 H 0.273 0.727 44 H 0.119 0.881 45 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.966 1.830 -5.048 29.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.173 4.173 3 C 0.026 3.974 4 H 0.095 0.905 5 C -0.155 4.155 6 C -0.166 4.166 7 C -0.039 4.039 8 N -0.316 5.316 9 C 0.307 3.693 10 O -0.417 6.417 11 C 0.283 3.717 12 O -0.396 6.396 13 N -0.268 5.268 14 C -0.040 4.040 15 C -0.094 4.094 16 C -0.239 4.239 17 C 0.062 3.938 18 O -0.133 6.133 19 C -0.488 4.488 20 H 0.124 0.876 21 C -0.221 4.221 22 N -0.557 5.557 23 Si 0.839 3.161 24 H -0.171 1.171 25 H -0.195 1.195 26 H -0.196 1.196 27 C -0.205 4.205 28 C -0.085 4.085 29 H 0.075 0.925 30 H 0.093 0.907 31 H 0.077 0.923 32 H 0.083 0.917 33 H 0.069 0.931 34 H 0.110 0.890 35 H 0.124 0.876 36 H 0.126 0.874 37 H 0.096 0.904 38 H 0.107 0.893 39 H 0.094 0.906 40 H 0.266 0.734 41 H 0.173 0.827 42 H 0.152 0.848 43 H 0.082 0.918 44 H 0.137 0.863 45 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -28.507 1.891 -5.416 29.079 hybrid contribution 0.877 -0.302 0.936 1.318 sum -27.630 1.590 -4.480 28.036 Atomic orbital electron populations 1.21679 0.93089 1.02351 1.02839 1.21876 0.97899 0.95467 1.02070 1.22073 0.77523 0.97495 1.00308 0.90496 1.22775 0.98960 0.99371 0.94394 1.22810 0.92849 0.97791 1.03144 1.22849 0.98540 0.96969 0.85496 1.48507 1.08528 1.56149 1.18459 1.19446 0.87016 0.80319 0.82493 1.90737 1.71206 1.41969 1.37798 1.20340 0.88531 0.79648 0.83161 1.90724 1.71419 1.40198 1.37237 1.42832 1.04305 1.57654 1.22011 1.17346 0.81732 1.10450 0.94517 1.20817 0.92785 0.98361 0.97450 1.21114 0.94626 1.10255 0.97927 1.19901 0.84372 0.94459 0.95038 1.83954 1.14892 1.81216 1.33214 1.21915 0.90600 1.52653 0.83673 0.87559 1.26617 0.95918 0.95854 1.03760 1.70195 1.07008 1.48531 1.30004 0.84507 0.78205 0.78410 0.74961 1.17142 1.19500 1.19553 1.20247 0.93825 1.10187 0.96192 1.20719 0.92013 0.98022 0.97795 0.92521 0.90680 0.92344 0.91662 0.93063 0.89021 0.87586 0.87404 0.90357 0.89321 0.90579 0.73410 0.82702 0.84836 0.91832 0.86299 0.84590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 9.68 71.98 0.70 -0.73 16 2 C -0.13 -2.04 5.41 30.59 0.17 -1.87 16 3 C 0.13 1.88 2.92 45.34 0.13 2.02 16 4 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 5 C -0.12 -0.93 5.72 31.78 0.18 -0.75 16 6 C -0.13 -1.24 7.07 31.91 0.23 -1.01 16 7 C 0.08 1.42 6.21 86.78 0.54 1.96 16 8 N -0.58 -11.78 3.07 -790.19 -2.42 -14.20 16 9 C 0.52 13.34 7.72 87.23 0.67 14.02 16 10 O -0.54 -15.14 15.27 -3.27 -0.05 -15.19 16 11 C 0.50 14.16 7.59 87.23 0.66 14.82 16 12 O -0.52 -16.49 11.35 -3.36 -0.04 -16.53 16 13 N -0.62 -17.21 5.32 -304.74 -1.62 -18.84 16 14 C 0.05 1.78 6.29 38.24 0.24 2.02 16 15 C -0.07 -2.51 9.96 22.39 0.22 -2.28 16 16 C -0.22 -9.24 9.16 22.37 0.20 -9.03 16 17 C 0.11 5.60 6.65 22.60 0.15 5.75 16 18 O -0.23 -13.47 9.75 -22.59 -0.22 -13.69 16 19 C -0.41 -23.52 9.48 67.92 0.64 -22.88 16 20 H 0.11 5.47 5.20 -2.91 -0.02 5.46 16 21 C -0.02 -1.34 5.49 84.83 0.47 -0.87 16 22 N -0.92 -56.04 13.67 21.61 0.30 -55.74 16 23 Si 1.02 42.20 29.55 68.60 2.03 44.22 16 24 H -0.25 -9.37 7.11 99.48 0.71 -8.66 16 25 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 26 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 27 C -0.18 -8.14 9.98 22.37 0.22 -7.92 16 28 C -0.07 -2.47 8.65 22.39 0.19 -2.28 16 29 H 0.06 0.57 8.14 -2.38 -0.02 0.56 16 30 H 0.07 0.48 7.65 -2.39 -0.02 0.46 16 31 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.06 0.96 8.02 -2.38 -0.02 0.94 16 33 H 0.05 1.08 6.55 -2.39 -0.02 1.07 16 34 H 0.09 0.57 7.78 -2.38 -0.02 0.55 16 35 H 0.11 0.44 8.14 -2.39 -0.02 0.42 16 36 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 37 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.09 1.92 5.90 -2.39 -0.01 1.91 16 39 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.43 9.83 8.29 -92.71 -0.77 9.06 16 41 H 0.16 3.96 8.06 -2.91 -0.02 3.94 16 42 H 0.13 5.55 5.63 -2.91 -0.02 5.53 16 43 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 44 H 0.12 5.18 8.06 -2.91 -0.02 5.16 16 45 H 0.14 4.82 6.37 -2.91 -0.02 4.81 16 Total: -1.00 -73.05 370.11 3.85 -69.19 By element: Atomic # 1 Polarization: 29.55 SS G_CDS: 0.26 Total: 29.82 kcal Atomic # 6 Polarization: -14.67 SS G_CDS: 5.62 Total: -9.04 kcal Atomic # 7 Polarization: -85.03 SS G_CDS: -3.75 Total: -88.78 kcal Atomic # 8 Polarization: -45.10 SS G_CDS: -0.31 Total: -45.41 kcal Atomic # 14 Polarization: 42.20 SS G_CDS: 2.03 Total: 44.22 kcal Total: -73.05 3.85 -69.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318423044.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.673 kcal (2) G-P(sol) polarization free energy of solvation -73.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds