Wall clock time and date at job start Tue Mar 31 2020 17:25:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52991 * 109.47233 * 2 1 4 4 H 1.09003 * 109.87327 * 304.21846 * 3 2 1 5 5 C 1.54375 * 109.90327 * 65.36100 * 3 2 1 6 6 C 1.55153 * 102.91911 * 141.57660 * 5 3 2 7 7 C 1.54911 * 101.62160 * 324.54836 * 6 5 3 8 8 N 1.47022 * 109.88283 * 183.20448 * 3 2 1 9 9 C 1.34774 * 125.64714 * 61.60388 * 8 3 2 10 10 O 1.21367 * 120.00192 * 355.45767 * 9 8 3 11 11 C 1.49323 * 119.99977 * 175.45498 * 9 8 3 12 12 O 1.21400 * 119.99850 * 0.02562 * 11 9 8 13 13 N 1.34767 * 120.00258 * 179.97438 * 11 9 8 14 14 C 1.39744 * 120.00231 * 184.60596 * 13 11 9 15 15 C 1.38989 * 120.00675 * 323.97877 * 14 13 11 16 16 C 1.37970 * 119.99070 * 179.76744 * 15 14 13 17 17 C 1.38933 * 120.00659 * 0.52679 * 16 15 14 18 18 O 1.35765 * 119.99535 * 179.72666 * 17 16 15 19 19 C 1.34797 * 117.00086 * 174.42522 * 18 17 16 20 20 H 1.07995 * 120.00225 * 5.08127 * 19 18 17 21 21 C 1.38658 * 119.99785 * 185.08343 * 19 18 17 22 22 N 1.31562 * 119.99811 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 119.99777 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47184 * 90.00101 * 23 21 19 25 25 H 1.48501 * 109.46954 * 209.99748 * 23 21 19 26 26 H 1.48497 * 109.47370 * 329.99840 * 23 21 19 27 27 C 1.38936 * 120.01682 * 359.69902 * 17 16 15 28 28 C 1.37966 * 120.00323 * 0.05126 * 27 17 16 29 29 H 1.09000 * 109.47023 * 64.75021 * 1 2 3 30 30 H 1.09005 * 109.47400 * 184.74862 * 1 2 3 31 31 H 1.08997 * 109.46971 * 304.74830 * 1 2 3 32 32 H 1.08999 * 109.46963 * 239.99762 * 2 1 3 33 33 H 1.09001 * 109.46728 * 119.99839 * 2 1 3 34 34 H 1.08998 * 110.70080 * 23.23260 * 5 3 2 35 35 H 1.09003 * 110.75415 * 259.94494 * 5 3 2 36 36 H 1.08996 * 111.00689 * 206.45592 * 6 5 3 37 37 H 1.09007 * 111.00640 * 82.64533 * 6 5 3 38 38 H 1.08992 * 110.36884 * 155.82924 * 7 6 5 39 39 H 1.08998 * 110.36535 * 278.15877 * 7 6 5 40 40 H 0.97000 * 120.00066 * 4.61384 * 13 11 9 41 41 H 1.08003 * 120.00541 * 359.97438 * 15 14 13 42 42 H 1.08004 * 119.99736 * 180.25285 * 16 15 14 43 43 H 0.97002 * 119.99470 * 180.02562 * 22 21 19 44 44 H 1.07998 * 119.99969 * 180.02562 * 27 17 16 45 45 H 1.08004 * 120.00385 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6201 1.9839 -0.8477 5 6 1.6447 2.1396 1.3194 6 6 2.8911 3.0057 1.6410 7 6 4.0406 2.0976 1.1374 8 7 3.5082 1.4537 -0.0773 9 6 4.2452 0.9569 -1.0904 10 8 3.7031 0.3724 -2.0055 11 6 5.7289 1.1256 -1.0870 12 8 6.2712 1.7099 -0.1714 13 7 6.4660 0.6285 -2.0998 14 6 7.8606 0.7011 -2.0502 15 6 8.4793 1.8100 -1.4851 16 6 9.8562 1.8793 -1.4320 17 6 10.6245 0.8457 -1.9532 18 8 11.9794 0.9166 -1.9059 19 6 12.6639 -0.1674 -2.3225 20 1 12.1368 -1.0076 -2.7497 21 6 14.0448 -0.2036 -2.2026 22 7 14.6870 0.8202 -1.6826 23 14 14.9934 -1.7054 -2.7806 24 1 15.3703 -1.5341 -4.2067 25 1 16.2209 -1.8617 -1.9596 26 1 14.1432 -2.9142 -2.6350 27 6 10.0064 -0.2608 -2.5225 28 6 8.6295 -0.3330 -2.5712 29 1 -0.3633 0.4384 -0.9295 30 1 -0.3634 -1.0242 0.0851 31 1 -0.3633 0.5857 0.8444 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.4716 1.4055 2.1063 35 1 0.7653 2.7675 1.1760 36 1 2.9762 3.1853 2.7127 37 1 2.8662 3.9461 1.0903 38 1 4.9188 2.6961 0.8956 39 1 4.2872 1.3465 1.8878 40 1 6.0284 0.2203 -2.8632 41 1 7.8822 2.6159 -1.0845 42 1 10.3370 2.7390 -0.9891 43 1 15.6531 0.7949 -1.5990 44 1 10.6039 -1.0643 -2.9272 45 1 8.1491 -1.1930 -3.0141 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318423046.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:25:50 Heat of formation + Delta-G solvation = -61.441147 kcal Electronic energy + Delta-G solvation = -27737.607790 eV Core-core repulsion = 23721.227158 eV Total energy + Delta-G solvation = -4016.380633 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.09572 -39.69310 -38.65078 -37.77665 -36.60308 -34.19323 -33.70922 -32.23536 -31.86754 -30.28608 -28.44248 -28.11543 -25.83117 -25.19464 -23.51452 -22.49139 -22.30399 -21.41102 -20.58032 -19.67669 -18.14858 -17.90068 -17.34014 -17.10774 -16.25315 -16.16632 -15.63987 -15.05118 -14.73357 -14.61286 -14.35259 -14.20852 -13.90858 -13.74711 -13.63259 -13.45816 -13.38849 -12.88476 -12.74952 -12.57635 -12.42377 -12.01551 -11.99149 -11.77319 -11.60651 -11.58136 -11.49192 -11.25708 -11.08629 -11.04897 -10.78405 -10.72123 -10.47436 -9.78174 -9.48276 -9.26016 -8.97954 -8.76300 -8.27073 -7.02439 -6.48896 -4.06654 1.27723 2.09942 2.14158 2.32938 3.10127 3.11879 3.16747 3.22479 3.43429 3.93806 4.14359 4.21834 4.41551 4.43545 4.53614 4.78320 4.82965 4.93751 5.03610 5.05387 5.13504 5.26690 5.31470 5.38479 5.51499 5.53435 5.57736 5.65526 5.70009 5.71464 5.79187 5.80902 5.91306 6.05430 6.10925 6.13491 6.19977 6.73132 6.74422 6.83046 7.02043 7.06312 7.16784 7.30353 7.43192 7.66877 7.73093 7.95377 8.10049 8.96281 9.65409 10.68697 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.029296 B = 0.002107 C = 0.002022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.542764 B =13287.717677 C =13846.697617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.138 4.138 3 C 0.136 3.864 4 H 0.079 0.921 5 C -0.128 4.128 6 C -0.137 4.137 7 C 0.091 3.909 8 N -0.588 5.588 9 C 0.525 3.475 10 O -0.523 6.523 11 C 0.499 3.501 12 O -0.506 6.506 13 N -0.624 5.624 14 C 0.023 3.977 15 C -0.062 4.062 16 C -0.180 4.180 17 C 0.151 3.849 18 O -0.173 6.173 19 C -0.393 4.393 20 H 0.093 0.907 21 C 0.039 3.961 22 N -0.860 5.860 23 Si 0.942 3.058 24 H -0.273 1.273 25 H -0.277 1.277 26 H -0.267 1.267 27 C -0.220 4.220 28 C -0.081 4.081 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.080 0.920 33 H 0.064 0.936 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.077 0.923 38 H 0.109 0.891 39 H 0.072 0.928 40 H 0.413 0.587 41 H 0.128 0.872 42 H 0.122 0.878 43 H 0.271 0.729 44 H 0.133 0.867 45 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.514 1.167 4.512 25.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.177 4.177 3 C 0.033 3.967 4 H 0.098 0.902 5 C -0.166 4.166 6 C -0.175 4.175 7 C -0.031 4.031 8 N -0.323 5.323 9 C 0.308 3.692 10 O -0.399 6.399 11 C 0.281 3.719 12 O -0.382 6.382 13 N -0.269 5.269 14 C -0.069 4.069 15 C -0.082 4.082 16 C -0.200 4.200 17 C 0.096 3.904 18 O -0.076 6.076 19 C -0.469 4.469 20 H 0.110 0.890 21 C -0.165 4.165 22 N -0.494 5.494 23 Si 0.766 3.234 24 H -0.198 1.198 25 H -0.202 1.202 26 H -0.192 1.192 27 C -0.240 4.240 28 C -0.101 4.101 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.098 0.902 33 H 0.082 0.918 34 H 0.098 0.902 35 H 0.101 0.899 36 H 0.105 0.895 37 H 0.095 0.905 38 H 0.127 0.873 39 H 0.091 0.909 40 H 0.250 0.750 41 H 0.146 0.854 42 H 0.140 0.860 43 H 0.081 0.919 44 H 0.151 0.849 45 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -24.967 1.470 4.746 25.456 hybrid contribution 0.239 -1.093 -0.661 1.299 sum -24.728 0.377 4.085 25.066 Atomic orbital electron populations 1.21720 0.94950 1.01971 1.01886 1.21931 0.96305 0.95949 1.03487 1.21780 0.79106 0.97036 0.98769 0.90249 1.22761 0.98489 0.99120 0.96196 1.22856 0.94066 0.98389 1.02164 1.22778 0.98238 0.96416 0.85709 1.48334 1.06991 1.57250 1.19687 1.19830 0.87742 0.79707 0.81888 1.90739 1.73105 1.40733 1.35343 1.19954 0.87531 0.81353 0.83087 1.90705 1.72410 1.39868 1.35192 1.42846 1.05411 1.57653 1.21037 1.17233 0.80201 0.97681 1.11781 1.20698 0.93543 0.96060 0.97928 1.20129 0.92214 1.00223 1.07410 1.19450 0.85127 0.93235 0.92573 1.83980 1.11830 1.38823 1.72955 1.21339 0.89352 0.95025 1.41149 0.88960 1.25314 0.95777 0.98788 0.96663 1.70042 1.09061 1.29547 1.40750 0.85697 0.79044 0.79911 0.78701 1.19840 1.20229 1.19159 1.20983 0.93747 1.01045 1.08229 1.20522 0.93408 0.95982 1.00163 0.92574 0.92438 0.92518 0.90179 0.91770 0.90180 0.89852 0.89517 0.90460 0.87281 0.90926 0.75021 0.85376 0.85959 0.91931 0.84919 0.86879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.81 37.16 0.36 -0.57 16 2 C -0.14 -1.18 5.38 -26.73 -0.14 -1.33 16 3 C 0.14 1.16 2.94 -66.93 -0.20 0.97 16 4 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 5 C -0.13 -0.75 5.45 -24.87 -0.14 -0.88 16 6 C -0.14 -0.87 7.08 -24.58 -0.17 -1.05 16 7 C 0.09 0.86 6.23 -2.53 -0.02 0.84 16 8 N -0.59 -6.46 3.07 -163.54 -0.50 -6.96 16 9 C 0.53 7.05 7.73 -11.65 -0.09 6.96 16 10 O -0.52 -7.68 15.30 5.48 0.08 -7.60 16 11 C 0.50 7.45 7.69 -11.65 -0.09 7.36 16 12 O -0.51 -8.31 11.20 5.45 0.06 -8.25 16 13 N -0.62 -9.33 5.32 -10.27 -0.05 -9.38 16 14 C 0.02 0.41 6.28 -83.69 -0.53 -0.11 16 15 C -0.06 -1.19 8.68 -39.40 -0.34 -1.54 16 16 C -0.18 -3.85 9.98 -39.42 -0.39 -4.25 16 17 C 0.15 3.60 6.65 -39.07 -0.26 3.34 16 18 O -0.17 -4.87 9.75 0.10 0.00 -4.86 16 19 C -0.39 -10.78 9.48 30.89 0.29 -10.48 16 20 H 0.09 2.32 5.20 -52.49 -0.27 2.05 16 21 C 0.04 1.07 5.49 -17.51 -0.10 0.97 16 22 N -0.86 -24.92 13.67 55.48 0.76 -24.16 16 23 Si 0.94 20.22 29.55 -169.99 -5.02 15.20 16 24 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 25 H -0.28 -5.85 7.11 56.52 0.40 -5.44 16 26 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 27 C -0.22 -4.66 9.16 -39.42 -0.36 -5.02 16 28 C -0.08 -1.45 9.96 -39.40 -0.39 -1.85 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.29 7.27 -51.93 -0.38 -0.09 16 32 H 0.08 0.88 6.61 -51.93 -0.34 0.54 16 33 H 0.06 0.55 8.07 -51.93 -0.42 0.13 16 34 H 0.08 0.42 7.79 -51.93 -0.40 0.02 16 35 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 36 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.11 1.22 5.89 -51.93 -0.31 0.92 16 39 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.41 5.31 8.30 -40.82 -0.34 4.97 16 41 H 0.13 2.32 6.29 -52.48 -0.33 1.99 16 42 H 0.12 2.52 8.06 -52.48 -0.42 2.10 16 43 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 44 H 0.13 2.77 5.63 -52.49 -0.30 2.48 16 45 H 0.11 1.69 8.06 -52.48 -0.42 1.26 16 LS Contribution 369.65 15.07 5.57 5.57 Total: -1.00 -31.62 369.65 -7.69 -39.31 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: -6.03 Total: 7.77 kcal Atomic # 6 Polarization: -4.07 SS G_CDS: -2.56 Total: -6.63 kcal Atomic # 7 Polarization: -40.70 SS G_CDS: 0.20 Total: -40.50 kcal Atomic # 8 Polarization: -20.86 SS G_CDS: 0.15 Total: -20.71 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.20 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -31.62 -7.69 -39.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318423046.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.135 kcal (2) G-P(sol) polarization free energy of solvation -31.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds