Wall clock time and date at job start Tue Mar 31 2020 17:25:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52991 * 109.47233 * 2 1 4 4 H 1.09003 * 109.87327 * 304.21846 * 3 2 1 5 5 C 1.54375 * 109.90327 * 65.36100 * 3 2 1 6 6 C 1.55153 * 102.91911 * 141.57660 * 5 3 2 7 7 C 1.54911 * 101.62160 * 324.54836 * 6 5 3 8 8 N 1.47022 * 109.88283 * 183.20448 * 3 2 1 9 9 C 1.34774 * 125.64714 * 61.60388 * 8 3 2 10 10 O 1.21367 * 120.00192 * 355.45767 * 9 8 3 11 11 C 1.49323 * 119.99977 * 175.45498 * 9 8 3 12 12 O 1.21400 * 119.99850 * 0.02562 * 11 9 8 13 13 N 1.34767 * 120.00258 * 179.97438 * 11 9 8 14 14 C 1.39744 * 120.00231 * 184.60596 * 13 11 9 15 15 C 1.38989 * 120.00675 * 323.97877 * 14 13 11 16 16 C 1.37970 * 119.99070 * 179.76744 * 15 14 13 17 17 C 1.38933 * 120.00659 * 0.52679 * 16 15 14 18 18 O 1.35765 * 119.99535 * 179.72666 * 17 16 15 19 19 C 1.34797 * 117.00086 * 174.42522 * 18 17 16 20 20 H 1.07995 * 120.00225 * 5.08127 * 19 18 17 21 21 C 1.38658 * 119.99785 * 185.08343 * 19 18 17 22 22 N 1.31562 * 119.99811 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 119.99777 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47184 * 90.00101 * 23 21 19 25 25 H 1.48501 * 109.46954 * 209.99748 * 23 21 19 26 26 H 1.48497 * 109.47370 * 329.99840 * 23 21 19 27 27 C 1.38936 * 120.01682 * 359.69902 * 17 16 15 28 28 C 1.37966 * 120.00323 * 0.05126 * 27 17 16 29 29 H 1.09000 * 109.47023 * 64.75021 * 1 2 3 30 30 H 1.09005 * 109.47400 * 184.74862 * 1 2 3 31 31 H 1.08997 * 109.46971 * 304.74830 * 1 2 3 32 32 H 1.08999 * 109.46963 * 239.99762 * 2 1 3 33 33 H 1.09001 * 109.46728 * 119.99839 * 2 1 3 34 34 H 1.08998 * 110.70080 * 23.23260 * 5 3 2 35 35 H 1.09003 * 110.75415 * 259.94494 * 5 3 2 36 36 H 1.08996 * 111.00689 * 206.45592 * 6 5 3 37 37 H 1.09007 * 111.00640 * 82.64533 * 6 5 3 38 38 H 1.08992 * 110.36884 * 155.82924 * 7 6 5 39 39 H 1.08998 * 110.36535 * 278.15877 * 7 6 5 40 40 H 0.97000 * 120.00066 * 4.61384 * 13 11 9 41 41 H 1.08003 * 120.00541 * 359.97438 * 15 14 13 42 42 H 1.08004 * 119.99736 * 180.25285 * 16 15 14 43 43 H 0.97002 * 119.99470 * 180.02562 * 22 21 19 44 44 H 1.07998 * 119.99969 * 180.02562 * 27 17 16 45 45 H 1.08004 * 120.00385 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6201 1.9839 -0.8477 5 6 1.6447 2.1396 1.3194 6 6 2.8911 3.0057 1.6410 7 6 4.0406 2.0976 1.1374 8 7 3.5082 1.4537 -0.0773 9 6 4.2452 0.9569 -1.0904 10 8 3.7031 0.3724 -2.0055 11 6 5.7289 1.1256 -1.0870 12 8 6.2712 1.7099 -0.1714 13 7 6.4660 0.6285 -2.0998 14 6 7.8606 0.7011 -2.0502 15 6 8.4793 1.8100 -1.4851 16 6 9.8562 1.8793 -1.4320 17 6 10.6245 0.8457 -1.9532 18 8 11.9794 0.9166 -1.9059 19 6 12.6639 -0.1674 -2.3225 20 1 12.1368 -1.0076 -2.7497 21 6 14.0448 -0.2036 -2.2026 22 7 14.6870 0.8202 -1.6826 23 14 14.9934 -1.7054 -2.7806 24 1 15.3703 -1.5341 -4.2067 25 1 16.2209 -1.8617 -1.9596 26 1 14.1432 -2.9142 -2.6350 27 6 10.0064 -0.2608 -2.5225 28 6 8.6295 -0.3330 -2.5712 29 1 -0.3633 0.4384 -0.9295 30 1 -0.3634 -1.0242 0.0851 31 1 -0.3633 0.5857 0.8444 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.4716 1.4055 2.1063 35 1 0.7653 2.7675 1.1760 36 1 2.9762 3.1853 2.7127 37 1 2.8662 3.9461 1.0903 38 1 4.9188 2.6961 0.8956 39 1 4.2872 1.3465 1.8878 40 1 6.0284 0.2203 -2.8632 41 1 7.8822 2.6159 -1.0845 42 1 10.3370 2.7390 -0.9891 43 1 15.6531 0.7949 -1.5990 44 1 10.6039 -1.0643 -2.9272 45 1 8.1491 -1.1930 -3.0141 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318423046.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:25:49 Heat of formation + Delta-G solvation = -81.507592 kcal Electronic energy + Delta-G solvation = -27738.477937 eV Core-core repulsion = 23721.227158 eV Total energy + Delta-G solvation = -4017.250779 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.22233 -41.00840 -40.13869 -38.75951 -38.22096 -35.59431 -34.45664 -34.17134 -32.62217 -31.92959 -29.94351 -28.82025 -27.49824 -26.50941 -24.44002 -23.94196 -23.27271 -22.57912 -21.70840 -20.71904 -19.88947 -19.11926 -18.86686 -18.27165 -17.66425 -17.22879 -16.69222 -16.39342 -16.21399 -15.78181 -15.53682 -15.46607 -15.42971 -14.96043 -14.78172 -14.56414 -14.41102 -14.18091 -14.02877 -13.63807 -13.45305 -13.36893 -13.25198 -12.97066 -12.77314 -12.69170 -12.63928 -12.40029 -12.13036 -12.11699 -11.98056 -11.60099 -11.44438 -11.42514 -11.09295 -10.64400 -10.54713 -9.90258 -9.85688 -8.71795 -8.46644 -6.13895 0.04426 0.49418 0.66607 1.15453 1.37320 1.46122 1.54702 2.02740 2.18392 2.37811 2.78776 3.11993 3.18421 3.48397 3.59634 3.65988 3.85708 4.00835 4.08327 4.17453 4.21521 4.33660 4.45045 4.46914 4.51054 4.55581 4.63253 4.75008 4.90103 4.92715 4.98471 5.02817 5.09839 5.12226 5.13177 5.15889 5.23464 5.25377 5.33948 5.37516 5.44362 5.49020 5.62531 5.95368 6.01477 6.08434 6.19218 6.60311 6.85794 6.97645 7.76456 8.76093 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.029296 B = 0.002107 C = 0.002022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.542764 B =13287.717677 C =13846.697617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.135 4.135 3 C 0.128 3.872 4 H 0.078 0.922 5 C -0.118 4.118 6 C -0.128 4.128 7 C 0.083 3.917 8 N -0.584 5.584 9 C 0.525 3.475 10 O -0.539 6.539 11 C 0.501 3.499 12 O -0.520 6.520 13 N -0.621 5.621 14 C 0.049 3.951 15 C -0.064 4.064 16 C -0.187 4.187 17 C 0.114 3.886 18 O -0.226 6.226 19 C -0.414 4.414 20 H 0.107 0.893 21 C -0.023 4.023 22 N -0.919 5.919 23 Si 1.020 2.980 24 H -0.263 1.263 25 H -0.274 1.274 26 H -0.251 1.251 27 C -0.221 4.221 28 C -0.073 4.073 29 H 0.055 0.945 30 H 0.059 0.941 31 H 0.075 0.925 32 H 0.051 0.949 33 H 0.063 0.937 34 H 0.091 0.909 35 H 0.106 0.894 36 H 0.107 0.893 37 H 0.079 0.921 38 H 0.090 0.910 39 H 0.074 0.926 40 H 0.427 0.573 41 H 0.140 0.860 42 H 0.119 0.881 43 H 0.273 0.727 44 H 0.134 0.866 45 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.031 0.102 4.806 29.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.173 4.173 3 C 0.026 3.974 4 H 0.096 0.904 5 C -0.155 4.155 6 C -0.166 4.166 7 C -0.039 4.039 8 N -0.316 5.316 9 C 0.307 3.693 10 O -0.417 6.417 11 C 0.283 3.717 12 O -0.396 6.396 13 N -0.268 5.268 14 C -0.044 4.044 15 C -0.083 4.083 16 C -0.207 4.207 17 C 0.063 3.937 18 O -0.132 6.132 19 C -0.489 4.489 20 H 0.124 0.876 21 C -0.221 4.221 22 N -0.557 5.557 23 Si 0.839 3.161 24 H -0.188 1.188 25 H -0.198 1.198 26 H -0.175 1.175 27 C -0.240 4.240 28 C -0.093 4.093 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.094 0.906 32 H 0.070 0.930 33 H 0.081 0.919 34 H 0.109 0.891 35 H 0.125 0.875 36 H 0.125 0.875 37 H 0.098 0.902 38 H 0.108 0.892 39 H 0.092 0.908 40 H 0.266 0.734 41 H 0.157 0.843 42 H 0.137 0.863 43 H 0.082 0.918 44 H 0.152 0.848 45 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -28.586 0.415 5.049 29.031 hybrid contribution 0.917 -0.665 -0.680 1.321 sum -27.669 -0.250 4.369 28.013 Atomic orbital electron populations 1.21692 0.93036 1.02575 1.02715 1.21875 0.97929 0.95517 1.01996 1.22063 0.77333 0.97473 1.00531 0.90409 1.22790 0.98901 0.99239 0.94610 1.22849 0.92660 0.97726 1.03317 1.22893 0.99057 0.96774 0.85130 1.48507 1.08227 1.55777 1.19134 1.19454 0.86886 0.80327 0.82600 1.90740 1.72989 1.41830 1.36174 1.20348 0.88444 0.80340 0.82534 1.90716 1.73003 1.40204 1.35713 1.42793 1.04079 1.57977 1.21925 1.17350 0.81746 0.96509 1.08760 1.20830 0.92561 0.96968 0.97975 1.20272 0.93178 0.99823 1.07402 1.19916 0.84364 0.95119 0.94285 1.83953 1.13754 1.39921 1.75601 1.21869 0.90088 0.95534 1.41453 0.87604 1.26618 0.96587 1.02251 0.96664 1.70193 1.09408 1.32374 1.43708 0.84570 0.77329 0.75856 0.78370 1.18779 1.19839 1.17483 1.21114 0.95178 1.00115 1.07635 1.20836 0.92083 0.97086 0.99261 0.92627 0.92208 0.90579 0.93049 0.91856 0.89063 0.87513 0.87483 0.90189 0.89185 0.90812 0.73408 0.84263 0.86319 0.91826 0.84846 0.82793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 9.81 71.98 0.71 -0.73 16 2 C -0.13 -2.06 5.38 30.59 0.16 -1.89 16 3 C 0.13 1.89 2.94 45.36 0.13 2.02 16 4 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 5 C -0.12 -0.94 5.45 31.80 0.17 -0.76 16 6 C -0.13 -1.23 7.08 31.99 0.23 -1.00 16 7 C 0.08 1.43 6.23 86.85 0.54 1.97 16 8 N -0.58 -11.82 3.07 -789.68 -2.42 -14.24 16 9 C 0.52 13.37 7.73 87.23 0.67 14.04 16 10 O -0.54 -15.15 15.30 -3.30 -0.05 -15.20 16 11 C 0.50 14.18 7.69 87.23 0.67 14.85 16 12 O -0.52 -16.49 11.20 -3.40 -0.04 -16.53 16 13 N -0.62 -17.20 5.32 -304.74 -1.62 -18.82 16 14 C 0.05 1.67 6.28 38.24 0.24 1.91 16 15 C -0.06 -2.39 8.68 22.39 0.19 -2.20 16 16 C -0.19 -8.24 9.98 22.37 0.22 -8.02 16 17 C 0.11 5.65 6.65 22.60 0.15 5.80 16 18 O -0.23 -13.45 9.75 -22.57 -0.22 -13.67 16 19 C -0.41 -23.61 9.48 67.92 0.64 -22.97 16 20 H 0.11 5.45 5.20 -2.91 -0.02 5.44 16 21 C -0.02 -1.32 5.49 84.83 0.47 -0.85 16 22 N -0.92 -56.03 13.67 21.62 0.30 -55.73 16 23 Si 1.02 42.21 29.55 68.60 2.03 44.24 16 24 H -0.26 -10.33 7.11 99.48 0.71 -9.63 16 25 H -0.27 -10.99 7.11 99.48 0.71 -10.29 16 26 H -0.25 -9.60 7.11 99.48 0.71 -8.89 16 27 C -0.22 -9.30 9.16 22.37 0.20 -9.10 16 28 C -0.07 -2.47 9.96 22.39 0.22 -2.24 16 29 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.06 0.58 8.14 -2.38 -0.02 0.57 16 31 H 0.08 0.48 7.27 -2.39 -0.02 0.47 16 32 H 0.05 1.09 6.61 -2.39 -0.02 1.07 16 33 H 0.06 0.96 8.07 -2.39 -0.02 0.94 16 34 H 0.09 0.58 7.79 -2.39 -0.02 0.56 16 35 H 0.11 0.44 8.14 -2.39 -0.02 0.42 16 36 H 0.11 0.66 8.14 -2.39 -0.02 0.64 16 37 H 0.08 0.76 8.14 -2.38 -0.02 0.74 16 38 H 0.09 1.93 5.89 -2.39 -0.01 1.91 16 39 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.43 9.83 8.30 -92.71 -0.77 9.06 16 41 H 0.14 4.94 6.29 -2.91 -0.02 4.92 16 42 H 0.12 5.18 8.06 -2.91 -0.02 5.15 16 43 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 44 H 0.13 5.55 5.63 -2.91 -0.02 5.53 16 45 H 0.15 3.98 8.06 -2.91 -0.02 3.96 16 Total: -1.00 -72.96 369.65 3.87 -69.08 By element: Atomic # 1 Polarization: 29.76 SS G_CDS: 0.26 Total: 30.02 kcal Atomic # 6 Polarization: -14.79 SS G_CDS: 5.64 Total: -9.16 kcal Atomic # 7 Polarization: -85.05 SS G_CDS: -3.74 Total: -88.79 kcal Atomic # 8 Polarization: -45.09 SS G_CDS: -0.31 Total: -45.40 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 2.03 Total: 44.24 kcal Total: -72.96 3.87 -69.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318423046.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.424 kcal (2) G-P(sol) polarization free energy of solvation -72.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds