Wall clock time and date at job start Tue Mar 31 2020 17:50:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47490 * 2 1 4 4 N 1.46501 * 109.47044 * 179.97438 * 3 2 1 5 5 C 1.34776 * 119.99947 * 81.54541 * 4 3 2 6 6 O 1.21367 * 119.99891 * 185.23645 * 5 4 3 7 7 C 1.49318 * 119.99718 * 5.23953 * 5 4 3 8 8 O 1.21387 * 120.00578 * 4.12246 * 7 5 4 9 9 N 1.34781 * 119.99829 * 184.13052 * 7 5 4 10 10 C 1.39741 * 120.00366 * 175.82863 * 9 7 5 11 11 C 1.38998 * 120.00406 * 35.42257 * 10 9 7 12 12 C 1.37967 * 119.99182 * 179.97438 * 11 10 9 13 13 C 1.38940 * 120.00764 * 0.02562 * 12 11 10 14 14 O 1.35756 * 119.99314 * 179.97438 * 13 12 11 15 15 C 1.34809 * 116.99692 * 5.74739 * 14 13 12 16 16 H 1.07996 * 120.00236 * 354.91474 * 15 14 13 17 17 C 1.38648 * 119.99511 * 174.90879 * 15 14 13 18 18 N 1.31566 * 120.00459 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 120.00008 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.46858 * 0.02562 * 19 17 15 21 21 H 1.48496 * 109.47245 * 119.99829 * 19 17 15 22 22 H 1.48500 * 109.47389 * 240.00256 * 19 17 15 23 23 C 1.38927 * 120.01057 * 0.23408 * 13 12 11 24 24 C 1.37972 * 120.01354 * 359.48916 * 23 13 12 25 25 C 1.46502 * 119.99985 * 261.54017 * 4 3 2 26 26 C 1.53004 * 117.49947 * 201.32647 * 25 4 3 27 27 C 1.52998 * 117.49568 * 132.70504 * 25 4 3 28 28 H 1.09001 * 109.47186 * 300.00336 * 1 2 3 29 29 H 1.08999 * 109.47200 * 59.99701 * 1 2 3 30 30 H 1.08994 * 109.47857 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47186 * 239.99664 * 2 1 3 32 32 H 1.09008 * 109.47088 * 120.00032 * 2 1 3 33 33 H 1.09001 * 109.47181 * 59.99660 * 3 2 1 34 34 H 1.08999 * 109.47143 * 300.00334 * 3 2 1 35 35 H 0.97004 * 119.99886 * 355.83481 * 9 7 5 36 36 H 1.08003 * 120.00266 * 0.02562 * 11 10 9 37 37 H 1.08002 * 119.99714 * 180.02562 * 12 11 10 38 38 H 0.96992 * 120.00102 * 179.97438 * 18 17 15 39 39 H 1.08007 * 119.99363 * 179.72287 * 23 13 12 40 40 H 1.08001 * 120.00666 * 180.25652 * 24 23 13 41 41 H 1.09000 * 115.55255 * 347.03575 * 25 4 3 42 42 H 1.08997 * 117.49393 * 0.02562 * 26 25 4 43 43 H 1.09000 * 117.49973 * 145.02266 * 26 25 4 44 44 H 1.09000 * 117.49751 * 214.98007 * 27 25 4 45 45 H 1.08996 * 117.49917 * 359.97438 * 27 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.1794 1.2705 -1.1536 6 8 5.3892 1.1752 -1.1411 7 6 3.4379 1.1975 -2.4476 8 8 2.2362 1.3675 -2.4691 9 7 4.1030 0.9426 -3.5919 10 6 3.3995 0.7878 -4.7893 11 6 2.2603 1.5471 -5.0294 12 6 1.5663 1.3944 -6.2120 13 6 2.0057 0.4813 -7.1626 14 8 1.3222 0.3309 -8.3259 15 6 0.2982 1.1790 -8.5481 16 1 0.0019 1.8803 -7.7821 17 6 -0.3746 1.1509 -9.7601 18 7 -0.0140 0.2963 -10.6931 19 14 -1.7932 2.3265 -10.0683 20 1 -1.9980 3.1799 -8.8704 21 1 -1.4795 3.1846 -11.2390 22 1 -3.0294 1.5501 -10.3408 23 6 3.1412 -0.2816 -6.9206 24 6 3.8390 -0.1254 -5.7406 25 6 4.2370 1.6291 1.2558 26 6 5.6852 2.1142 1.1637 27 6 5.3872 0.6649 1.5530 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.6767 1.9564 0.8900 34 1 1.6767 1.9563 -0.8899 35 1 5.0700 0.8666 -3.5842 36 1 1.9190 2.2572 -4.2907 37 1 0.6813 1.9846 -6.3988 38 1 -0.4849 0.2764 -11.5408 39 1 3.4800 -0.9945 -7.6578 40 1 4.7241 -0.7156 -5.5544 41 1 3.6419 1.9779 2.0998 42 1 6.0931 2.2948 0.1692 43 1 6.0430 2.7824 1.9470 44 1 5.5489 0.3796 2.5925 45 1 5.5989 -0.1086 0.8149 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320592547.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:50:54 Heat of formation + Delta-G solvation = -16.362278 kcal Electronic energy + Delta-G solvation = -28205.142921 eV Core-core repulsion = 24190.717055 eV Total energy + Delta-G solvation = -4014.425866 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.31483 -39.66622 -38.61026 -37.12046 -36.64714 -35.40882 -33.99009 -32.36925 -32.23727 -30.29019 -28.40229 -26.47723 -25.64454 -24.97176 -22.88292 -22.61814 -22.14613 -21.82180 -20.85689 -19.74985 -18.20467 -17.82513 -17.35020 -16.77665 -16.40389 -16.12853 -15.90778 -15.19301 -14.76510 -14.52817 -14.44971 -14.28300 -13.93134 -13.67193 -13.64362 -13.51913 -13.36830 -12.98127 -12.64623 -12.44171 -12.27676 -11.84211 -11.77375 -11.65749 -11.63304 -11.54243 -11.19062 -11.09010 -11.00204 -10.82639 -10.74534 -10.50592 -10.45383 -9.80328 -9.42213 -9.16094 -8.77090 -8.68227 -8.27771 -7.03448 -6.49795 -4.07153 1.20470 2.07465 2.12894 2.28816 3.07807 3.12323 3.15080 3.18056 3.32200 3.66655 3.93519 4.23434 4.50100 4.53777 4.62739 4.74437 4.81504 4.93535 5.04573 5.08231 5.20261 5.21233 5.40005 5.47039 5.57861 5.60794 5.65008 5.69576 5.73660 5.89008 5.98741 6.05588 6.07364 6.09533 6.21374 6.22503 6.35655 6.63605 6.71451 6.84399 6.92317 6.99249 7.22807 7.35800 7.36795 7.66503 7.69542 7.95129 8.08284 8.95861 9.64228 10.67900 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.019043 B = 0.002551 C = 0.002372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1470.023819 B =10971.656674 C =11800.854350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.131 4.131 3 C 0.087 3.913 4 N -0.555 5.555 5 C 0.510 3.490 6 O -0.519 6.519 7 C 0.496 3.504 8 O -0.500 6.500 9 N -0.623 5.623 10 C 0.022 3.978 11 C -0.059 4.059 12 C -0.222 4.222 13 C 0.150 3.850 14 O -0.173 6.173 15 C -0.391 4.391 16 H 0.094 0.906 17 C 0.039 3.961 18 N -0.860 5.860 19 Si 0.941 3.059 20 H -0.266 1.266 21 H -0.276 1.276 22 H -0.275 1.275 23 C -0.178 4.178 24 C -0.085 4.085 25 C 0.066 3.934 26 C -0.187 4.187 27 C -0.183 4.183 28 H 0.051 0.949 29 H 0.064 0.936 30 H 0.055 0.945 31 H 0.064 0.936 32 H 0.056 0.944 33 H 0.074 0.926 34 H 0.127 0.873 35 H 0.413 0.587 36 H 0.125 0.875 37 H 0.132 0.868 38 H 0.270 0.730 39 H 0.123 0.877 40 H 0.117 0.883 41 H 0.134 0.866 42 H 0.126 0.874 43 H 0.093 0.907 44 H 0.097 0.903 45 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.438 2.418 22.742 23.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.170 4.170 3 C -0.034 4.034 4 N -0.286 5.286 5 C 0.293 3.707 6 O -0.396 6.396 7 C 0.278 3.722 8 O -0.376 6.376 9 N -0.268 5.268 10 C -0.070 4.070 11 C -0.078 4.078 12 C -0.242 4.242 13 C 0.096 3.904 14 O -0.076 6.076 15 C -0.467 4.467 16 H 0.111 0.889 17 C -0.165 4.165 18 N -0.495 5.495 19 Si 0.766 3.234 20 H -0.190 1.190 21 H -0.201 1.201 22 H -0.201 1.201 23 C -0.198 4.198 24 C -0.105 4.105 25 C -0.038 4.038 26 C -0.224 4.224 27 C -0.221 4.221 28 H 0.070 0.930 29 H 0.083 0.917 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.075 0.925 33 H 0.093 0.907 34 H 0.145 0.855 35 H 0.249 0.751 36 H 0.143 0.857 37 H 0.149 0.851 38 H 0.080 0.920 39 H 0.141 0.859 40 H 0.135 0.865 41 H 0.151 0.849 42 H 0.144 0.856 43 H 0.112 0.888 44 H 0.115 0.885 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 6.149 2.267 22.316 23.258 hybrid contribution -0.263 0.443 0.023 0.515 sum 5.886 2.710 22.339 23.260 Atomic orbital electron populations 1.21635 0.94703 1.01948 1.02100 1.21816 0.96738 0.96482 1.01953 1.22507 0.76628 0.98568 1.05676 1.47246 1.07853 1.68368 1.05132 1.20205 0.87317 0.78051 0.85127 1.90658 1.13605 1.48419 1.86925 1.20015 0.87600 0.79655 0.84947 1.90628 1.13857 1.47502 1.85636 1.42866 1.10894 1.67535 1.05492 1.17228 0.98926 1.03633 0.87200 1.20816 0.93829 0.97057 0.96147 1.21088 1.03764 1.04470 0.94841 1.19440 0.90809 0.92967 0.87209 1.83969 1.40829 1.51499 1.31337 1.21406 1.08236 1.15698 1.01348 0.88855 1.25310 0.98971 0.97807 0.94427 1.70047 1.39799 1.34051 1.05581 0.85636 0.79598 0.79228 0.78931 1.18996 1.20106 1.20098 1.20001 0.96474 1.04609 0.98679 1.20388 0.99890 0.96672 0.93511 1.21867 0.88853 1.05849 0.87278 1.23624 0.96631 0.97016 1.05140 1.23269 1.02242 0.94403 1.02223 0.92972 0.91740 0.92607 0.91733 0.92478 0.90741 0.85545 0.75066 0.85694 0.85059 0.91979 0.85875 0.86498 0.84868 0.85571 0.88827 0.88506 0.88153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.91 37.15 0.37 -0.99 16 2 C -0.13 -1.33 5.82 -26.73 -0.16 -1.48 16 3 C 0.09 0.86 5.05 -4.04 -0.02 0.84 16 4 N -0.56 -5.93 2.88 -166.66 -0.48 -6.41 16 5 C 0.51 6.50 7.40 -11.65 -0.09 6.41 16 6 O -0.52 -7.03 12.09 5.48 0.07 -6.97 16 7 C 0.50 7.07 7.30 -11.65 -0.08 6.98 16 8 O -0.50 -7.78 9.74 5.46 0.05 -7.73 16 9 N -0.62 -8.92 5.32 -10.27 -0.05 -8.98 16 10 C 0.02 0.39 6.29 -83.69 -0.53 -0.14 16 11 C -0.06 -1.12 8.68 -39.40 -0.34 -1.46 16 12 C -0.22 -4.80 9.16 -39.42 -0.36 -5.16 16 13 C 0.15 3.54 6.65 -39.07 -0.26 3.28 16 14 O -0.17 -4.84 9.75 0.09 0.00 -4.84 16 15 C -0.39 -10.72 9.48 30.88 0.29 -10.43 16 16 H 0.09 2.38 5.20 -52.49 -0.27 2.11 16 17 C 0.04 1.07 5.49 -17.51 -0.10 0.97 16 18 N -0.86 -24.83 13.67 55.48 0.76 -24.07 16 19 Si 0.94 20.25 29.55 -169.99 -5.02 15.22 16 20 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 21 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 22 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 23 C -0.18 -3.60 9.98 -39.42 -0.39 -4.00 16 24 C -0.08 -1.45 9.96 -39.40 -0.39 -1.84 16 25 C 0.07 0.58 6.63 -67.93 -0.45 0.13 16 26 C -0.19 -1.70 9.64 -26.73 -0.26 -1.96 16 27 C -0.18 -1.62 9.82 -26.73 -0.26 -1.88 16 28 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.81 7.24 -51.93 -0.38 0.43 16 32 H 0.06 0.53 8.14 -51.92 -0.42 0.11 16 33 H 0.07 0.56 7.91 -51.93 -0.41 0.15 16 34 H 0.13 1.48 5.16 -52.20 -0.27 1.21 16 35 H 0.41 5.05 8.30 -40.82 -0.34 4.71 16 36 H 0.13 2.28 6.26 -52.48 -0.33 1.95 16 37 H 0.13 2.85 5.63 -52.49 -0.30 2.56 16 38 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 39 H 0.12 2.37 8.06 -52.48 -0.42 1.95 16 40 H 0.12 1.62 8.06 -52.49 -0.42 1.20 16 41 H 0.13 0.84 8.00 -51.93 -0.42 0.42 16 42 H 0.13 1.46 5.55 -51.93 -0.29 1.17 16 43 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.10 1.10 7.24 -51.93 -0.38 0.72 16 LS Contribution 371.36 15.07 5.60 5.60 Total: -1.00 -30.54 371.36 -8.00 -38.54 By element: Atomic # 1 Polarization: 16.26 SS G_CDS: -5.89 Total: 10.37 kcal Atomic # 6 Polarization: -7.71 SS G_CDS: -3.03 Total: -10.73 kcal Atomic # 7 Polarization: -39.69 SS G_CDS: 0.22 Total: -39.46 kcal Atomic # 8 Polarization: -19.65 SS G_CDS: 0.12 Total: -19.53 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.22 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -30.54 -8.00 -38.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320592547.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.173 kcal (2) G-P(sol) polarization free energy of solvation -30.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds