Wall clock time and date at job start Tue Mar 31 2020 17:50:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47490 * 2 1 4 4 N 1.46501 * 109.47044 * 179.97438 * 3 2 1 5 5 C 1.34776 * 119.99947 * 81.54541 * 4 3 2 6 6 O 1.21367 * 119.99891 * 185.23645 * 5 4 3 7 7 C 1.49318 * 119.99718 * 5.23953 * 5 4 3 8 8 O 1.21387 * 120.00578 * 4.12246 * 7 5 4 9 9 N 1.34781 * 119.99829 * 184.13052 * 7 5 4 10 10 C 1.39741 * 120.00366 * 175.82863 * 9 7 5 11 11 C 1.38998 * 120.00406 * 35.42257 * 10 9 7 12 12 C 1.37967 * 119.99182 * 179.97438 * 11 10 9 13 13 C 1.38940 * 120.00764 * 0.02562 * 12 11 10 14 14 O 1.35756 * 119.99314 * 179.97438 * 13 12 11 15 15 C 1.34809 * 116.99692 * 5.74739 * 14 13 12 16 16 H 1.07996 * 120.00236 * 354.91474 * 15 14 13 17 17 C 1.38648 * 119.99511 * 174.90879 * 15 14 13 18 18 N 1.31566 * 120.00459 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 120.00008 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.46858 * 0.02562 * 19 17 15 21 21 H 1.48496 * 109.47245 * 119.99829 * 19 17 15 22 22 H 1.48500 * 109.47389 * 240.00256 * 19 17 15 23 23 C 1.38927 * 120.01057 * 0.23408 * 13 12 11 24 24 C 1.37972 * 120.01354 * 359.48916 * 23 13 12 25 25 C 1.46502 * 119.99985 * 261.54017 * 4 3 2 26 26 C 1.53004 * 117.49947 * 201.32647 * 25 4 3 27 27 C 1.52998 * 117.49568 * 132.70504 * 25 4 3 28 28 H 1.09001 * 109.47186 * 300.00336 * 1 2 3 29 29 H 1.08999 * 109.47200 * 59.99701 * 1 2 3 30 30 H 1.08994 * 109.47857 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47186 * 239.99664 * 2 1 3 32 32 H 1.09008 * 109.47088 * 120.00032 * 2 1 3 33 33 H 1.09001 * 109.47181 * 59.99660 * 3 2 1 34 34 H 1.08999 * 109.47143 * 300.00334 * 3 2 1 35 35 H 0.97004 * 119.99886 * 355.83481 * 9 7 5 36 36 H 1.08003 * 120.00266 * 0.02562 * 11 10 9 37 37 H 1.08002 * 119.99714 * 180.02562 * 12 11 10 38 38 H 0.96992 * 120.00102 * 179.97438 * 18 17 15 39 39 H 1.08007 * 119.99363 * 179.72287 * 23 13 12 40 40 H 1.08001 * 120.00666 * 180.25652 * 24 23 13 41 41 H 1.09000 * 115.55255 * 347.03575 * 25 4 3 42 42 H 1.08997 * 117.49393 * 0.02562 * 26 25 4 43 43 H 1.09000 * 117.49973 * 145.02266 * 26 25 4 44 44 H 1.09000 * 117.49751 * 214.98007 * 27 25 4 45 45 H 1.08996 * 117.49917 * 359.97438 * 27 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.1794 1.2705 -1.1536 6 8 5.3892 1.1752 -1.1411 7 6 3.4379 1.1975 -2.4476 8 8 2.2362 1.3675 -2.4691 9 7 4.1030 0.9426 -3.5919 10 6 3.3995 0.7878 -4.7893 11 6 2.2603 1.5471 -5.0294 12 6 1.5663 1.3944 -6.2120 13 6 2.0057 0.4813 -7.1626 14 8 1.3222 0.3309 -8.3259 15 6 0.2982 1.1790 -8.5481 16 1 0.0019 1.8803 -7.7821 17 6 -0.3746 1.1509 -9.7601 18 7 -0.0140 0.2963 -10.6931 19 14 -1.7932 2.3265 -10.0683 20 1 -1.9980 3.1799 -8.8704 21 1 -1.4795 3.1846 -11.2390 22 1 -3.0294 1.5501 -10.3408 23 6 3.1412 -0.2816 -6.9206 24 6 3.8390 -0.1254 -5.7406 25 6 4.2370 1.6291 1.2558 26 6 5.6852 2.1142 1.1637 27 6 5.3872 0.6649 1.5530 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.6767 1.9564 0.8900 34 1 1.6767 1.9563 -0.8899 35 1 5.0700 0.8666 -3.5842 36 1 1.9190 2.2572 -4.2907 37 1 0.6813 1.9846 -6.3988 38 1 -0.4849 0.2764 -11.5408 39 1 3.4800 -0.9945 -7.6578 40 1 4.7241 -0.7156 -5.5544 41 1 3.6419 1.9779 2.0998 42 1 6.0931 2.2948 0.1692 43 1 6.0430 2.7824 1.9470 44 1 5.5489 0.3796 2.5925 45 1 5.5989 -0.1086 0.8149 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320592547.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:50:53 Heat of formation + Delta-G solvation = -34.899318 kcal Electronic energy + Delta-G solvation = -28205.946748 eV Core-core repulsion = 24190.717055 eV Total energy + Delta-G solvation = -4015.229693 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.38955 -41.02759 -40.09834 -38.36441 -37.86335 -36.27971 -35.36579 -34.17463 -33.19756 -31.91254 -29.93846 -27.58941 -27.18462 -26.18488 -24.18636 -23.59332 -23.30224 -22.61481 -22.23842 -20.91813 -19.90679 -19.18666 -18.66777 -18.22165 -17.41994 -17.17021 -17.01198 -16.32294 -16.21083 -16.10901 -15.53934 -15.41867 -15.32419 -15.24383 -14.94335 -14.68698 -14.38440 -14.19157 -14.17804 -13.59220 -13.51391 -13.26406 -13.05729 -13.02736 -12.74611 -12.55941 -12.46109 -12.41542 -12.10199 -11.99361 -11.82379 -11.63163 -11.44517 -11.23603 -11.07389 -10.61277 -10.31055 -9.86989 -9.54082 -8.69745 -8.47656 -6.14382 0.03990 0.50906 0.67692 1.16645 1.36298 1.43690 1.54172 2.00217 2.17548 2.29743 2.79046 2.95495 3.11125 3.17963 3.48707 3.80045 3.94439 4.03420 4.05834 4.07993 4.11662 4.18100 4.32833 4.44694 4.46916 4.54588 4.64243 4.72049 4.81396 4.83837 4.93106 5.02353 5.05460 5.07226 5.17823 5.21904 5.28970 5.31577 5.36035 5.41117 5.52613 5.58912 5.66515 5.88760 6.01164 6.06391 6.20434 6.64064 6.88834 6.97322 7.75489 8.75184 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.019043 B = 0.002551 C = 0.002372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1470.023819 B =10971.656674 C =11800.854350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.126 4.126 3 C 0.087 3.913 4 N -0.549 5.549 5 C 0.509 3.491 6 O -0.529 6.529 7 C 0.496 3.504 8 O -0.511 6.511 9 N -0.621 5.621 10 C 0.051 3.949 11 C -0.065 4.065 12 C -0.226 4.226 13 C 0.113 3.887 14 O -0.225 6.225 15 C -0.412 4.412 16 H 0.101 0.899 17 C -0.021 4.021 18 N -0.918 5.918 19 Si 1.017 2.983 20 H -0.253 1.253 21 H -0.268 1.268 22 H -0.268 1.268 23 C -0.180 4.180 24 C -0.073 4.073 25 C 0.063 3.937 26 C -0.191 4.191 27 C -0.182 4.182 28 H 0.074 0.926 29 H 0.045 0.955 30 H 0.055 0.945 31 H 0.034 0.966 32 H 0.070 0.930 33 H 0.108 0.892 34 H 0.107 0.893 35 H 0.426 0.574 36 H 0.135 0.865 37 H 0.122 0.878 38 H 0.273 0.727 39 H 0.129 0.871 40 H 0.161 0.839 41 H 0.169 0.831 42 H 0.100 0.900 43 H 0.117 0.883 44 H 0.122 0.878 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.072 3.373 26.682 27.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.165 4.165 3 C -0.034 4.034 4 N -0.279 5.279 5 C 0.292 3.708 6 O -0.407 6.407 7 C 0.279 3.721 8 O -0.388 6.388 9 N -0.268 5.268 10 C -0.042 4.042 11 C -0.085 4.085 12 C -0.246 4.246 13 C 0.062 3.938 14 O -0.131 6.131 15 C -0.488 4.488 16 H 0.118 0.882 17 C -0.218 4.218 18 N -0.556 5.556 19 Si 0.836 3.164 20 H -0.176 1.176 21 H -0.193 1.193 22 H -0.193 1.193 23 C -0.200 4.200 24 C -0.093 4.093 25 C -0.040 4.040 26 C -0.229 4.229 27 C -0.220 4.220 28 H 0.093 0.907 29 H 0.064 0.936 30 H 0.074 0.926 31 H 0.053 0.947 32 H 0.089 0.911 33 H 0.126 0.874 34 H 0.125 0.875 35 H 0.265 0.735 36 H 0.152 0.848 37 H 0.140 0.860 38 H 0.082 0.918 39 H 0.147 0.853 40 H 0.179 0.821 41 H 0.186 0.814 42 H 0.118 0.882 43 H 0.135 0.865 44 H 0.140 0.860 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 6.823 3.228 26.342 27.402 hybrid contribution -0.216 0.116 -0.815 0.851 sum 6.607 3.344 25.527 26.579 Atomic orbital electron populations 1.21613 0.94136 1.02061 1.02315 1.21757 0.97183 0.96458 1.01082 1.22516 0.76031 0.98421 1.06386 1.47352 1.08344 1.66952 1.05208 1.19866 0.87060 0.78796 0.85094 1.90680 1.13787 1.49249 1.86969 1.20463 0.87558 0.78540 0.85552 1.90655 1.14611 1.47461 1.86053 1.42821 1.11515 1.67887 1.04573 1.17345 0.97535 1.01460 0.87853 1.20919 0.94480 0.97707 0.95378 1.21102 1.03854 1.04155 0.95479 1.19951 0.92165 0.94801 0.86881 1.83939 1.42343 1.53221 1.33609 1.21842 1.08755 1.16177 1.02071 0.88164 1.26549 1.01835 0.99627 0.93830 1.70179 1.42149 1.36791 1.06433 0.84554 0.75716 0.76895 0.79222 1.17599 1.19291 1.19314 1.20285 0.95677 1.04057 0.99969 1.20759 1.00486 0.96192 0.91820 1.22289 0.89065 1.05738 0.86927 1.23591 0.96952 0.97774 1.04537 1.23273 1.02177 0.93590 1.02938 0.90670 0.93562 0.92611 0.94728 0.91136 0.87381 0.87504 0.73461 0.84771 0.86000 0.91771 0.85322 0.82133 0.81406 0.88205 0.86472 0.85991 0.90604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.40 9.91 71.98 0.71 -1.68 16 2 C -0.13 -2.29 5.82 30.59 0.18 -2.11 16 3 C 0.09 1.48 5.05 86.38 0.44 1.91 16 4 N -0.55 -10.27 2.88 -799.54 -2.30 -12.56 16 5 C 0.51 12.06 7.40 87.23 0.65 12.71 16 6 O -0.53 -13.48 12.09 -3.30 -0.04 -13.52 16 7 C 0.50 13.36 7.30 87.23 0.64 13.99 16 8 O -0.51 -15.36 9.74 -3.36 -0.03 -15.39 16 9 N -0.62 -16.49 5.32 -304.74 -1.62 -18.11 16 10 C 0.05 1.68 6.29 38.24 0.24 1.92 16 11 C -0.06 -2.45 8.68 22.39 0.19 -2.26 16 12 C -0.23 -10.07 9.16 22.37 0.20 -9.86 16 13 C 0.11 5.55 6.65 22.60 0.15 5.70 16 14 O -0.22 -13.33 9.75 -22.59 -0.22 -13.55 16 15 C -0.41 -23.85 9.48 67.92 0.64 -23.21 16 16 H 0.10 5.38 5.20 -2.91 -0.02 5.36 16 17 C -0.02 -1.16 5.49 84.83 0.47 -0.69 16 18 N -0.92 -55.77 13.67 21.61 0.30 -55.47 16 19 Si 1.02 42.74 29.55 68.60 2.03 44.77 16 20 H -0.25 -9.88 7.11 99.48 0.71 -9.17 16 21 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 22 H -0.27 -10.81 7.11 99.48 0.71 -10.11 16 23 C -0.18 -7.34 9.98 22.37 0.22 -7.11 16 24 C -0.07 -2.35 9.96 22.39 0.22 -2.13 16 25 C 0.06 0.87 6.63 44.99 0.30 1.17 16 26 C -0.19 -2.95 9.64 30.60 0.30 -2.65 16 27 C -0.18 -2.68 9.82 30.59 0.30 -2.38 16 28 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.03 0.83 7.24 -2.39 -0.02 0.81 16 32 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 33 H 0.11 1.14 7.91 -2.39 -0.02 1.13 16 34 H 0.11 2.31 5.16 -6.65 -0.03 2.28 16 35 H 0.43 9.31 8.30 -92.70 -0.77 8.54 16 36 H 0.13 4.81 6.26 -2.91 -0.02 4.79 16 37 H 0.12 5.56 5.63 -2.91 -0.02 5.54 16 38 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 39 H 0.13 5.03 8.06 -2.91 -0.02 5.00 16 40 H 0.16 3.82 8.06 -2.91 -0.02 3.80 16 41 H 0.17 1.20 8.00 -2.39 -0.02 1.18 16 42 H 0.10 2.14 5.55 -2.39 -0.01 2.13 16 43 H 0.12 1.24 8.14 -2.39 -0.02 1.22 16 44 H 0.12 1.18 8.14 -2.39 -0.02 1.16 16 45 H 0.08 1.53 7.24 -2.39 -0.02 1.51 16 Total: -1.00 -71.46 371.36 4.21 -67.25 By element: Atomic # 1 Polarization: 33.02 SS G_CDS: 0.25 Total: 33.27 kcal Atomic # 6 Polarization: -22.54 SS G_CDS: 5.85 Total: -16.69 kcal Atomic # 7 Polarization: -82.52 SS G_CDS: -3.62 Total: -86.15 kcal Atomic # 8 Polarization: -42.16 SS G_CDS: -0.29 Total: -42.46 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.77 kcal Total: -71.46 4.21 -67.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320592547.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.354 kcal (2) G-P(sol) polarization free energy of solvation -71.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds