Wall clock time and date at job start Tue Mar 31 2020 17:32:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30991 * 1 3 3 C 1.50704 * 120.00328 * 2 1 4 4 C 1.52994 * 109.47150 * 124.99410 * 3 2 1 5 5 H 1.09000 * 109.47416 * 55.00237 * 4 3 2 6 6 C 1.52999 * 109.47060 * 175.00112 * 4 3 2 7 7 C 1.53000 * 109.47368 * 184.99981 * 6 4 3 8 8 N 1.46502 * 109.47551 * 295.00088 * 4 3 2 9 9 C 1.34773 * 120.00091 * 154.99912 * 8 4 3 10 10 O 1.21364 * 120.00305 * 0.02562 * 9 8 4 11 11 C 1.49318 * 120.00002 * 180.02562 * 9 8 4 12 12 O 1.21396 * 120.00016 * 359.97438 * 11 9 8 13 13 N 1.34780 * 120.00262 * 179.97438 * 11 9 8 14 14 C 1.39744 * 120.00174 * 175.49272 * 13 11 9 15 15 C 1.38986 * 120.00758 * 214.87128 * 14 13 11 16 16 C 1.37976 * 119.99245 * 179.74713 * 15 14 13 17 17 C 1.38939 * 120.00442 * 0.50480 * 16 15 14 18 18 O 1.35754 * 119.99373 * 179.74664 * 17 16 15 19 19 C 1.34798 * 117.00297 * 185.36791 * 18 17 16 20 20 H 1.07996 * 119.99779 * 354.96599 * 19 18 17 21 21 C 1.38649 * 120.00368 * 174.96075 * 19 18 17 22 22 N 1.31567 * 119.99923 * 0.02562 * 21 19 18 23 23 Si 1.86793 * 120.00225 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47016 * 60.00388 * 23 21 19 25 25 H 1.48504 * 109.47346 * 179.97438 * 23 21 19 26 26 H 1.48501 * 109.47295 * 300.00381 * 23 21 19 27 27 C 1.38942 * 120.01105 * 359.77067 * 17 16 15 28 28 C 1.37965 * 120.01097 * 359.97267 * 27 17 16 29 29 H 1.08000 * 120.00135 * 180.02562 * 1 2 3 30 30 H 1.07998 * 120.00333 * 0.02562 * 1 2 3 31 31 H 1.07998 * 120.00333 * 179.97438 * 2 1 3 32 32 H 1.09005 * 109.46680 * 4.99644 * 3 2 1 33 33 H 1.08995 * 109.46910 * 244.99669 * 3 2 1 34 34 H 1.09003 * 109.46927 * 65.00380 * 6 4 3 35 35 H 1.09002 * 109.47310 * 305.00518 * 6 4 3 36 36 H 1.09003 * 109.46770 * 60.00303 * 7 6 4 37 37 H 1.09006 * 109.47094 * 300.00067 * 7 6 4 38 38 H 1.09003 * 109.47452 * 180.02562 * 7 6 4 39 39 H 0.97001 * 119.99615 * 335.00204 * 8 4 3 40 40 H 0.97000 * 119.99406 * 355.50324 * 13 11 9 41 41 H 1.08003 * 120.00407 * 359.97438 * 15 14 13 42 42 H 1.07992 * 119.99609 * 180.25159 * 16 15 14 43 43 H 0.96993 * 120.00280 * 180.02562 * 22 21 19 44 44 H 1.07999 * 119.98876 * 179.97438 * 27 17 16 45 45 H 1.07997 * 120.00058 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0349 1.3331 1.1817 5 1 3.6826 0.4573 1.1405 6 6 3.8875 2.6016 1.1111 7 6 4.9418 2.5698 2.2193 8 7 2.2784 1.3224 2.4362 9 6 2.8471 0.8476 3.5620 10 8 3.9861 0.4293 3.5368 11 6 2.0759 0.8362 4.8406 12 8 0.9367 1.2550 4.8660 13 7 2.6444 0.3609 5.9664 14 6 1.9582 0.4366 7.1814 15 6 2.6573 0.6585 8.3619 16 6 1.9789 0.7384 9.5607 17 6 0.5981 0.5864 9.5891 18 8 -0.0685 0.6599 10.7694 19 6 -1.3898 0.3939 10.7436 20 1 -1.8865 0.2164 9.8012 21 6 -2.1110 0.3480 11.9269 22 7 -1.5059 0.5646 13.0749 23 14 -3.9420 -0.0199 11.8910 24 1 -4.1666 -1.3556 11.2820 25 1 -4.4757 -0.0123 13.2768 26 1 -4.6392 1.0149 11.0858 27 6 -0.1004 0.3588 8.4098 28 6 0.5769 0.2841 7.2101 29 1 -0.5400 -0.9353 0.0004 30 1 -0.5400 0.9353 -0.0004 31 1 1.8500 -0.9353 0.0004 32 1 1.3585 2.1317 0.0895 33 1 2.6213 1.4025 -0.9313 34 1 3.2496 3.4758 1.2414 35 1 4.3815 2.6538 0.1408 36 1 5.5797 1.6956 2.0889 37 1 4.4477 2.5177 3.1895 38 1 5.5489 3.4738 2.1693 39 1 1.3682 1.6570 2.4565 40 1 3.5299 -0.0335 5.9332 41 1 3.7311 0.7722 8.3404 42 1 2.5217 0.9149 10.4775 43 1 -2.0103 0.5322 13.9027 44 1 -1.1736 0.2403 8.4323 45 1 0.0338 0.1068 6.2936 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001321663793.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:32:50 Heat of formation + Delta-G solvation = -51.621228 kcal Electronic energy + Delta-G solvation = -27506.215790 eV Core-core repulsion = 23490.260981 eV Total energy + Delta-G solvation = -4015.954809 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.99631 -39.55347 -38.55154 -37.16404 -36.59827 -34.35447 -33.88679 -32.57938 -32.22052 -30.27026 -29.22620 -28.31160 -25.63552 -24.87211 -23.93067 -22.40393 -21.59107 -20.98246 -20.34880 -19.96350 -18.78349 -17.94291 -17.32929 -17.04239 -16.46648 -16.05236 -15.93012 -15.18505 -14.87048 -14.54038 -14.30424 -14.18994 -13.95797 -13.85075 -13.64359 -13.62155 -13.28205 -12.94231 -12.86092 -12.62570 -12.45697 -11.90004 -11.79606 -11.75677 -11.60618 -11.51869 -11.34631 -11.19152 -11.09257 -11.03569 -10.77535 -10.47498 -9.79220 -9.77174 -9.60253 -9.37766 -9.21052 -8.74598 -8.26310 -7.01280 -6.48024 -4.05454 1.28472 1.92212 2.12916 2.18729 2.40151 3.12788 3.13152 3.16598 3.24893 3.62861 3.95187 4.21001 4.41520 4.47855 4.55106 4.67866 4.82083 4.89808 5.06194 5.06457 5.16704 5.21988 5.29489 5.44854 5.52027 5.62844 5.66153 5.68091 5.70501 5.82504 6.03814 6.05547 6.10755 6.16290 6.24258 6.26883 6.38413 6.63273 6.72968 6.89360 6.96026 7.05453 7.24194 7.38488 7.46303 7.68744 7.75453 7.96745 8.10436 8.97351 9.65835 10.69544 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.018179 B = 0.002284 C = 0.002082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1539.840072 B =12256.942413 C =13444.771604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.159 4.159 3 C -0.102 4.102 4 C 0.147 3.853 5 H 0.094 0.906 6 C -0.136 4.136 7 C -0.148 4.148 8 N -0.693 5.693 9 C 0.513 3.487 10 O -0.518 6.518 11 C 0.494 3.506 12 O -0.510 6.510 13 N -0.624 5.624 14 C 0.022 3.978 15 C -0.085 4.085 16 C -0.178 4.178 17 C 0.150 3.850 18 O -0.173 6.173 19 C -0.392 4.392 20 H 0.093 0.907 21 C 0.040 3.960 22 N -0.861 5.861 23 Si 0.941 3.059 24 H -0.269 1.269 25 H -0.278 1.278 26 H -0.269 1.269 27 C -0.222 4.222 28 C -0.060 4.060 29 H 0.098 0.902 30 H 0.097 0.903 31 H 0.109 0.891 32 H 0.075 0.925 33 H 0.091 0.909 34 H 0.066 0.934 35 H 0.074 0.926 36 H 0.061 0.939 37 H 0.055 0.945 38 H 0.048 0.952 39 H 0.412 0.588 40 H 0.413 0.587 41 H 0.118 0.882 42 H 0.123 0.877 43 H 0.271 0.729 44 H 0.132 0.868 45 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.494 1.037 -24.851 26.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.177 4.177 3 C -0.140 4.140 4 C 0.043 3.957 5 H 0.112 0.888 6 C -0.174 4.174 7 C -0.205 4.205 8 N -0.347 5.347 9 C 0.294 3.706 10 O -0.394 6.394 11 C 0.275 3.725 12 O -0.385 6.385 13 N -0.270 5.270 14 C -0.070 4.070 15 C -0.105 4.105 16 C -0.198 4.198 17 C 0.095 3.905 18 O -0.076 6.076 19 C -0.468 4.468 20 H 0.110 0.890 21 C -0.165 4.165 22 N -0.495 5.495 23 Si 0.766 3.234 24 H -0.194 1.194 25 H -0.203 1.203 26 H -0.194 1.194 27 C -0.242 4.242 28 C -0.080 4.080 29 H 0.116 0.884 30 H 0.115 0.885 31 H 0.127 0.873 32 H 0.094 0.906 33 H 0.109 0.891 34 H 0.084 0.916 35 H 0.092 0.908 36 H 0.080 0.920 37 H 0.074 0.926 38 H 0.067 0.933 39 H 0.248 0.752 40 H 0.250 0.750 41 H 0.136 0.864 42 H 0.141 0.859 43 H 0.081 0.919 44 H 0.149 0.851 45 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 8.519 1.116 -24.383 25.852 hybrid contribution -0.958 -0.221 -0.059 0.985 sum 7.561 0.895 -24.442 25.601 Atomic orbital electron populations 1.23899 0.95904 1.02137 1.00362 1.22878 0.96102 0.98168 1.00549 1.21087 0.98504 0.96346 0.98023 1.21146 0.92878 0.99694 0.82015 0.88777 1.21996 0.97949 0.97363 1.00108 1.21823 0.98520 1.01448 0.98700 1.45789 1.18515 1.62573 1.07825 1.20077 0.86754 0.78675 0.85096 1.90760 1.17429 1.45563 1.85649 1.20090 0.87319 0.79944 0.85139 1.90775 1.17162 1.45449 1.85149 1.42843 1.20818 1.57445 1.05844 1.17240 0.91949 1.14101 0.83711 1.20387 0.98625 1.00605 0.90867 1.20002 0.91648 1.10489 0.97640 1.19444 0.91604 0.92787 0.86642 1.83963 1.22848 1.75185 1.25591 1.21308 0.80762 1.49815 0.94911 0.88975 1.25302 1.00502 0.96561 0.94104 1.70029 1.36822 1.44918 0.97759 0.85771 0.80402 0.79322 0.77911 1.19443 1.20254 1.19421 1.21088 1.00875 1.10592 0.91627 1.20836 0.92298 0.96987 0.97861 0.88386 0.88451 0.87304 0.90593 0.89078 0.91566 0.90778 0.91982 0.92591 0.93306 0.75161 0.75023 0.86448 0.85853 0.91888 0.85064 0.85683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.27 14.32 29.02 0.42 -0.85 16 2 C -0.16 -1.06 9.25 -36.02 -0.33 -1.39 16 3 C -0.10 -0.56 5.20 -27.88 -0.15 -0.70 16 4 C 0.15 1.07 2.24 -67.93 -0.15 0.92 16 5 H 0.09 0.79 7.58 -51.93 -0.39 0.39 16 6 C -0.14 -0.94 5.61 -26.73 -0.15 -1.09 16 7 C -0.15 -1.34 8.51 37.16 0.32 -1.02 16 8 N -0.69 -6.50 4.74 -54.28 -0.26 -6.76 16 9 C 0.51 6.18 6.45 -11.65 -0.08 6.10 16 10 O -0.52 -6.74 13.62 5.48 0.07 -6.66 16 11 C 0.49 7.18 7.73 -11.65 -0.09 7.09 16 12 O -0.51 -8.61 13.91 5.46 0.08 -8.53 16 13 N -0.62 -9.11 5.32 -10.27 -0.05 -9.17 16 14 C 0.02 0.40 6.30 -83.69 -0.53 -0.13 16 15 C -0.08 -1.48 9.96 -39.40 -0.39 -1.87 16 16 C -0.18 -3.66 9.98 -39.42 -0.39 -4.05 16 17 C 0.15 3.58 6.65 -39.06 -0.26 3.32 16 18 O -0.17 -4.88 9.75 0.13 0.00 -4.87 16 19 C -0.39 -10.87 9.48 30.88 0.29 -10.58 16 20 H 0.09 2.37 5.19 -52.49 -0.27 2.09 16 21 C 0.04 1.09 5.49 -17.51 -0.10 0.99 16 22 N -0.86 -25.00 13.67 55.48 0.76 -24.24 16 23 Si 0.94 20.41 29.55 -169.99 -5.02 15.39 16 24 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 25 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 26 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 27 C -0.22 -4.91 9.16 -39.42 -0.36 -5.27 16 28 C -0.06 -1.18 8.68 -39.40 -0.34 -1.53 16 29 H 0.10 0.65 8.06 -52.49 -0.42 0.22 16 30 H 0.10 0.60 7.84 -52.49 -0.41 0.19 16 31 H 0.11 0.73 8.06 -52.49 -0.42 0.31 16 32 H 0.08 0.38 7.79 -51.93 -0.40 -0.02 16 33 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.06 0.60 7.85 -51.93 -0.41 0.19 16 37 H 0.06 0.62 5.64 -51.93 -0.29 0.33 16 38 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 39 H 0.41 3.70 8.07 -40.82 -0.33 3.38 16 40 H 0.41 5.07 8.30 -40.82 -0.34 4.74 16 41 H 0.12 1.65 8.06 -52.48 -0.42 1.22 16 42 H 0.12 2.40 8.06 -52.49 -0.42 1.98 16 43 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 44 H 0.13 2.90 5.63 -52.49 -0.30 2.61 16 45 H 0.13 2.39 6.22 -52.49 -0.33 2.07 16 LS Contribution 380.13 15.07 5.73 5.73 Total: -1.00 -31.69 380.13 -6.98 -38.67 By element: Atomic # 1 Polarization: 16.49 SS G_CDS: -5.99 Total: 10.50 kcal Atomic # 6 Polarization: -7.76 SS G_CDS: -2.29 Total: -10.06 kcal Atomic # 7 Polarization: -40.61 SS G_CDS: 0.45 Total: -40.16 kcal Atomic # 8 Polarization: -20.22 SS G_CDS: 0.15 Total: -20.07 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -31.69 -6.98 -38.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321663793.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.955 kcal (2) G-P(sol) polarization free energy of solvation -31.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds