Wall clock time and date at job start Tue Mar 31 2020 17:32:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30991 * 1 3 3 C 1.50704 * 120.00328 * 2 1 4 4 C 1.52994 * 109.47150 * 124.99410 * 3 2 1 5 5 H 1.09000 * 109.47416 * 55.00237 * 4 3 2 6 6 C 1.52999 * 109.47060 * 175.00112 * 4 3 2 7 7 C 1.53000 * 109.47368 * 184.99981 * 6 4 3 8 8 N 1.46502 * 109.47551 * 295.00088 * 4 3 2 9 9 C 1.34773 * 120.00091 * 154.99912 * 8 4 3 10 10 O 1.21364 * 120.00305 * 0.02562 * 9 8 4 11 11 C 1.49318 * 120.00002 * 180.02562 * 9 8 4 12 12 O 1.21396 * 120.00016 * 359.97438 * 11 9 8 13 13 N 1.34780 * 120.00262 * 179.97438 * 11 9 8 14 14 C 1.39744 * 120.00174 * 175.49272 * 13 11 9 15 15 C 1.38986 * 120.00758 * 214.87128 * 14 13 11 16 16 C 1.37976 * 119.99245 * 179.74713 * 15 14 13 17 17 C 1.38939 * 120.00442 * 0.50480 * 16 15 14 18 18 O 1.35754 * 119.99373 * 179.74664 * 17 16 15 19 19 C 1.34798 * 117.00297 * 185.36791 * 18 17 16 20 20 H 1.07996 * 119.99779 * 354.96599 * 19 18 17 21 21 C 1.38649 * 120.00368 * 174.96075 * 19 18 17 22 22 N 1.31567 * 119.99923 * 0.02562 * 21 19 18 23 23 Si 1.86793 * 120.00225 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47016 * 60.00388 * 23 21 19 25 25 H 1.48504 * 109.47346 * 179.97438 * 23 21 19 26 26 H 1.48501 * 109.47295 * 300.00381 * 23 21 19 27 27 C 1.38942 * 120.01105 * 359.77067 * 17 16 15 28 28 C 1.37965 * 120.01097 * 359.97267 * 27 17 16 29 29 H 1.08000 * 120.00135 * 180.02562 * 1 2 3 30 30 H 1.07998 * 120.00333 * 0.02562 * 1 2 3 31 31 H 1.07998 * 120.00333 * 179.97438 * 2 1 3 32 32 H 1.09005 * 109.46680 * 4.99644 * 3 2 1 33 33 H 1.08995 * 109.46910 * 244.99669 * 3 2 1 34 34 H 1.09003 * 109.46927 * 65.00380 * 6 4 3 35 35 H 1.09002 * 109.47310 * 305.00518 * 6 4 3 36 36 H 1.09003 * 109.46770 * 60.00303 * 7 6 4 37 37 H 1.09006 * 109.47094 * 300.00067 * 7 6 4 38 38 H 1.09003 * 109.47452 * 180.02562 * 7 6 4 39 39 H 0.97001 * 119.99615 * 335.00204 * 8 4 3 40 40 H 0.97000 * 119.99406 * 355.50324 * 13 11 9 41 41 H 1.08003 * 120.00407 * 359.97438 * 15 14 13 42 42 H 1.07992 * 119.99609 * 180.25159 * 16 15 14 43 43 H 0.96993 * 120.00280 * 180.02562 * 22 21 19 44 44 H 1.07999 * 119.98876 * 179.97438 * 27 17 16 45 45 H 1.07997 * 120.00058 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0349 1.3331 1.1817 5 1 3.6826 0.4573 1.1405 6 6 3.8875 2.6016 1.1111 7 6 4.9418 2.5698 2.2193 8 7 2.2784 1.3224 2.4362 9 6 2.8471 0.8476 3.5620 10 8 3.9861 0.4293 3.5368 11 6 2.0759 0.8362 4.8406 12 8 0.9367 1.2550 4.8660 13 7 2.6444 0.3609 5.9664 14 6 1.9582 0.4366 7.1814 15 6 2.6573 0.6585 8.3619 16 6 1.9789 0.7384 9.5607 17 6 0.5981 0.5864 9.5891 18 8 -0.0685 0.6599 10.7694 19 6 -1.3898 0.3939 10.7436 20 1 -1.8865 0.2164 9.8012 21 6 -2.1110 0.3480 11.9269 22 7 -1.5059 0.5646 13.0749 23 14 -3.9420 -0.0199 11.8910 24 1 -4.1666 -1.3556 11.2820 25 1 -4.4757 -0.0123 13.2768 26 1 -4.6392 1.0149 11.0858 27 6 -0.1004 0.3588 8.4098 28 6 0.5769 0.2841 7.2101 29 1 -0.5400 -0.9353 0.0004 30 1 -0.5400 0.9353 -0.0004 31 1 1.8500 -0.9353 0.0004 32 1 1.3585 2.1317 0.0895 33 1 2.6213 1.4025 -0.9313 34 1 3.2496 3.4758 1.2414 35 1 4.3815 2.6538 0.1408 36 1 5.5797 1.6956 2.0889 37 1 4.4477 2.5177 3.1895 38 1 5.5489 3.4738 2.1693 39 1 1.3682 1.6570 2.4565 40 1 3.5299 -0.0335 5.9332 41 1 3.7311 0.7722 8.3404 42 1 2.5217 0.9149 10.4775 43 1 -2.0103 0.5322 13.9027 44 1 -1.1736 0.2403 8.4323 45 1 0.0338 0.1068 6.2936 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001321663793.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:32:49 Heat of formation + Delta-G solvation = -72.630881 kcal Electronic energy + Delta-G solvation = -27507.126837 eV Core-core repulsion = 23490.260981 eV Total energy + Delta-G solvation = -4016.865856 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.12393 -40.91079 -40.01457 -38.21169 -37.92770 -35.59451 -34.68559 -34.17377 -33.34743 -31.91400 -30.03814 -29.67391 -27.44072 -26.08210 -24.66219 -23.96878 -22.98261 -21.76571 -21.42999 -20.63412 -20.16363 -19.56744 -18.81319 -18.34147 -17.61642 -17.17343 -16.91024 -16.36885 -16.21154 -15.86791 -15.53024 -15.46732 -15.36952 -15.13732 -14.69737 -14.60368 -14.46439 -14.21096 -14.08625 -13.58333 -13.44566 -13.34281 -13.26797 -13.06347 -12.74282 -12.67162 -12.46864 -12.38820 -12.15050 -12.02318 -11.76093 -11.70328 -11.46508 -11.11508 -10.69633 -10.57060 -10.32904 -10.08131 -9.88010 -8.70075 -8.47506 -6.14398 0.09211 0.50612 0.71404 1.28926 1.35872 1.41271 1.46119 1.51567 2.11155 2.17951 2.60465 2.79246 3.12752 3.37752 3.48687 3.68661 3.94260 4.05892 4.08049 4.15336 4.27121 4.36009 4.44695 4.52441 4.58016 4.62090 4.64775 4.78452 4.91342 4.99972 5.04401 5.07178 5.07314 5.12094 5.18362 5.27136 5.32550 5.37951 5.46939 5.49811 5.66218 5.76729 5.87885 5.91054 6.01053 6.10932 6.34247 6.74464 6.92718 6.97130 7.75062 8.74825 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.018179 B = 0.002284 C = 0.002082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1539.840072 B =12256.942413 C =13444.771604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.164 4.164 3 C -0.095 4.095 4 C 0.147 3.853 5 H 0.087 0.913 6 C -0.132 4.132 7 C -0.147 4.147 8 N -0.681 5.681 9 C 0.520 3.480 10 O -0.527 6.527 11 C 0.495 3.505 12 O -0.532 6.532 13 N -0.620 5.620 14 C 0.049 3.951 15 C -0.071 4.071 16 C -0.180 4.180 17 C 0.112 3.888 18 O -0.224 6.224 19 C -0.415 4.415 20 H 0.100 0.900 21 C -0.020 4.020 22 N -0.917 5.917 23 Si 1.016 2.984 24 H -0.258 1.258 25 H -0.270 1.270 26 H -0.259 1.259 27 C -0.228 4.228 28 C -0.068 4.068 29 H 0.095 0.905 30 H 0.104 0.896 31 H 0.106 0.894 32 H 0.084 0.916 33 H 0.113 0.887 34 H 0.071 0.929 35 H 0.098 0.902 36 H 0.052 0.948 37 H 0.033 0.967 38 H 0.055 0.945 39 H 0.415 0.585 40 H 0.429 0.571 41 H 0.164 0.836 42 H 0.130 0.870 43 H 0.274 0.726 44 H 0.122 0.878 45 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.465 1.271 -28.232 29.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.182 4.182 3 C -0.132 4.132 4 C 0.043 3.957 5 H 0.105 0.895 6 C -0.170 4.170 7 C -0.205 4.205 8 N -0.334 5.334 9 C 0.300 3.700 10 O -0.404 6.404 11 C 0.278 3.722 12 O -0.408 6.408 13 N -0.267 5.267 14 C -0.044 4.044 15 C -0.091 4.091 16 C -0.200 4.200 17 C 0.061 3.939 18 O -0.130 6.130 19 C -0.491 4.491 20 H 0.118 0.882 21 C -0.218 4.218 22 N -0.555 5.555 23 Si 0.835 3.165 24 H -0.182 1.182 25 H -0.195 1.195 26 H -0.183 1.183 27 C -0.247 4.247 28 C -0.088 4.088 29 H 0.113 0.887 30 H 0.122 0.878 31 H 0.124 0.876 32 H 0.103 0.897 33 H 0.131 0.869 34 H 0.090 0.910 35 H 0.116 0.884 36 H 0.071 0.929 37 H 0.052 0.948 38 H 0.074 0.926 39 H 0.252 0.748 40 H 0.268 0.732 41 H 0.181 0.819 42 H 0.148 0.852 43 H 0.083 0.917 44 H 0.140 0.860 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 9.537 1.350 -27.856 29.475 hybrid contribution -0.985 -0.274 0.632 1.202 sum 8.552 1.076 -27.224 28.556 Atomic orbital electron populations 1.24008 0.96196 1.02413 1.00700 1.23002 0.96141 0.98754 1.00262 1.21081 0.98300 0.95901 0.97917 1.21315 0.93141 0.99770 0.81433 0.89531 1.21992 0.97404 0.97058 1.00520 1.21802 0.98949 1.01427 0.98308 1.45862 1.18683 1.61052 1.07760 1.19549 0.86348 0.79382 0.84746 1.90772 1.17575 1.46483 1.85584 1.20629 0.87039 0.78712 0.85845 1.90773 1.18340 1.46114 1.85617 1.42795 1.21302 1.57791 1.04816 1.17372 0.91429 1.10362 0.85244 1.20774 1.00726 0.98372 0.89239 1.20306 0.90528 1.09754 0.99368 1.19965 0.93040 0.94562 0.86294 1.83933 1.23221 1.78194 1.27650 1.21763 0.81327 1.50350 0.95677 0.88247 1.26545 1.05708 0.96124 0.93385 1.70165 1.39003 1.47715 0.98569 0.84684 0.73784 0.79658 0.78345 1.18229 1.19467 1.18303 1.21105 1.00683 1.10832 0.92118 1.20933 0.93439 0.97365 0.97088 0.88690 0.87810 0.87601 0.89698 0.86907 0.91039 0.88370 0.92854 0.94830 0.92577 0.74781 0.73221 0.81865 0.85170 0.91737 0.86018 0.84994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.34 14.32 67.79 0.97 -1.37 16 2 C -0.16 -1.81 9.25 25.66 0.24 -1.57 16 3 C -0.09 -0.73 5.20 29.85 0.16 -0.57 16 4 C 0.15 1.72 2.24 44.99 0.10 1.82 16 5 H 0.09 1.22 7.58 -2.39 -0.02 1.20 16 6 C -0.13 -1.39 5.61 30.59 0.17 -1.22 16 7 C -0.15 -2.34 8.51 71.98 0.61 -1.73 16 8 N -0.68 -11.15 4.74 -444.01 -2.10 -13.25 16 9 C 0.52 11.37 6.45 87.23 0.56 11.93 16 10 O -0.53 -12.51 13.62 -3.29 -0.04 -12.56 16 11 C 0.50 13.32 7.73 87.23 0.67 13.99 16 12 O -0.53 -17.04 13.91 -3.39 -0.05 -17.09 16 13 N -0.62 -16.41 5.32 -304.74 -1.62 -18.03 16 14 C 0.05 1.64 6.30 38.24 0.24 1.88 16 15 C -0.07 -2.31 9.96 22.39 0.22 -2.09 16 16 C -0.18 -7.35 9.98 22.38 0.22 -7.13 16 17 C 0.11 5.57 6.65 22.61 0.15 5.72 16 18 O -0.22 -13.34 9.75 -22.46 -0.22 -13.56 16 19 C -0.42 -24.18 9.48 67.92 0.64 -23.54 16 20 H 0.10 5.36 5.19 -2.91 -0.02 5.35 16 21 C -0.02 -1.11 5.49 84.83 0.47 -0.64 16 22 N -0.92 -55.87 13.67 21.61 0.30 -55.57 16 23 Si 1.02 42.93 29.55 68.60 2.03 44.96 16 24 H -0.26 -10.27 7.11 99.48 0.71 -9.57 16 25 H -0.27 -10.92 7.11 99.48 0.71 -10.22 16 26 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 27 C -0.23 -10.31 9.16 22.37 0.20 -10.11 16 28 C -0.07 -2.65 8.68 22.39 0.19 -2.45 16 29 H 0.09 1.16 8.06 -2.91 -0.02 1.13 16 30 H 0.10 1.08 7.84 -2.91 -0.02 1.05 16 31 H 0.11 1.22 8.06 -2.91 -0.02 1.20 16 32 H 0.08 0.55 7.79 -2.38 -0.02 0.53 16 33 H 0.11 0.45 8.14 -2.39 -0.02 0.43 16 34 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 36 H 0.05 0.93 7.85 -2.39 -0.02 0.91 16 37 H 0.03 0.68 5.64 -2.38 -0.01 0.66 16 38 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 39 H 0.42 6.49 8.07 -92.71 -0.75 5.74 16 40 H 0.43 9.08 8.30 -92.71 -0.77 8.32 16 41 H 0.16 3.83 8.06 -2.91 -0.02 3.81 16 42 H 0.13 5.07 8.06 -2.91 -0.02 5.05 16 43 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 44 H 0.12 5.63 5.63 -2.91 -0.02 5.62 16 45 H 0.13 4.94 6.22 -2.91 -0.02 4.92 16 Total: -1.00 -72.72 380.13 3.64 -69.08 By element: Atomic # 1 Polarization: 33.57 SS G_CDS: -0.48 Total: 33.09 kcal Atomic # 6 Polarization: -22.91 SS G_CDS: 5.83 Total: -17.07 kcal Atomic # 7 Polarization: -83.42 SS G_CDS: -3.43 Total: -86.85 kcal Atomic # 8 Polarization: -42.89 SS G_CDS: -0.31 Total: -43.20 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.96 kcal Total: -72.72 3.64 -69.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321663793.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.551 kcal (2) G-P(sol) polarization free energy of solvation -72.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds