Wall clock time and date at job start Tue Mar 31 2020 17:32:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50701 * 119.99868 * 2 1 4 4 C 1.52994 * 109.47218 * 125.00117 * 3 2 1 5 5 H 1.09003 * 109.47310 * 304.99934 * 4 3 2 6 6 C 1.53004 * 109.47015 * 184.99971 * 4 3 2 7 7 C 1.53006 * 109.46978 * 175.00108 * 6 4 3 8 8 N 1.46504 * 109.47313 * 65.00019 * 4 3 2 9 9 C 1.34770 * 119.99861 * 205.00089 * 8 4 3 10 10 O 1.21365 * 120.00396 * 359.97438 * 9 8 4 11 11 C 1.49319 * 119.99749 * 180.27620 * 9 8 4 12 12 O 1.21395 * 120.00246 * 359.72235 * 11 9 8 13 13 N 1.34784 * 120.00097 * 179.72500 * 11 9 8 14 14 C 1.39742 * 119.99878 * 175.49744 * 13 11 9 15 15 C 1.38993 * 120.00232 * 214.86631 * 14 13 11 16 16 C 1.37975 * 119.99232 * 179.74059 * 15 14 13 17 17 C 1.38942 * 120.00288 * 0.50914 * 16 15 14 18 18 O 1.35755 * 119.98823 * 179.74737 * 17 16 15 19 19 C 1.34801 * 116.99792 * 185.36870 * 18 17 16 20 20 H 1.08004 * 120.00062 * 354.95495 * 19 18 17 21 21 C 1.38647 * 120.00363 * 174.95973 * 19 18 17 22 22 N 1.31562 * 120.00093 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00249 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47284 * 60.00248 * 23 21 19 25 25 H 1.48503 * 109.47275 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.47043 * 299.99920 * 23 21 19 27 27 C 1.38935 * 120.01305 * 359.76336 * 17 16 15 28 28 C 1.37969 * 120.00984 * 359.97438 * 27 17 16 29 29 H 1.08003 * 119.99831 * 180.02562 * 1 2 3 30 30 H 1.08003 * 120.00206 * 359.97438 * 1 2 3 31 31 H 1.07999 * 120.00181 * 179.97438 * 2 1 3 32 32 H 1.08997 * 109.47216 * 4.99907 * 3 2 1 33 33 H 1.09000 * 109.46862 * 245.00279 * 3 2 1 34 34 H 1.09004 * 109.47043 * 294.99771 * 6 4 3 35 35 H 1.08995 * 109.47443 * 55.00101 * 6 4 3 36 36 H 1.09004 * 109.46959 * 299.99714 * 7 6 4 37 37 H 1.08995 * 109.47254 * 60.00255 * 7 6 4 38 38 H 1.09003 * 109.46792 * 180.02562 * 7 6 4 39 39 H 0.96998 * 119.99456 * 24.99636 * 8 4 3 40 40 H 0.96994 * 119.99817 * 355.49013 * 13 11 9 41 41 H 1.07998 * 120.00427 * 359.97438 * 15 14 13 42 42 H 1.07998 * 119.99953 * 180.25493 * 16 15 14 43 43 H 0.96991 * 120.00246 * 179.97438 * 22 21 19 44 44 H 1.08004 * 119.99431 * 179.97438 * 27 17 16 45 45 H 1.08000 * 119.99936 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3331 1.1816 5 1 2.4883 1.1469 2.1060 6 6 3.7091 2.7047 1.2551 7 6 4.5857 2.7756 2.5072 8 7 4.0547 0.2970 1.0001 9 6 4.6912 -0.2169 2.0711 10 8 4.4201 0.1790 3.1859 11 6 5.7349 -1.2686 1.8856 12 8 6.0064 -1.6643 0.7706 13 7 6.3754 -1.7786 2.9563 14 6 7.2836 -2.8280 2.7926 15 6 7.3976 -3.8076 3.7720 16 6 8.2905 -4.8466 3.6077 17 6 9.0833 -4.9077 2.4683 18 8 9.9654 -5.9273 2.3093 19 6 10.7816 -5.8689 1.2381 20 1 10.6610 -5.0807 0.5096 21 6 11.7760 -6.8206 1.0714 22 7 11.9233 -7.7805 1.9590 23 14 12.9066 -6.7401 -0.4134 24 1 13.6424 -5.4502 -0.4059 25 1 13.8760 -7.8638 -0.3590 26 1 12.0999 -6.8427 -1.6559 27 6 8.9736 -3.9255 1.4918 28 6 8.0770 -2.8893 1.6530 29 1 -0.5400 -0.9354 0.0004 30 1 -0.5400 0.9353 0.0004 31 1 1.8500 -0.9353 0.0004 32 1 1.3586 2.1316 0.0895 33 1 2.6212 1.4026 -0.9314 34 1 4.3274 2.8536 0.3698 35 1 2.9467 3.4823 1.3008 36 1 3.9674 2.6267 3.3925 37 1 5.3481 1.9981 2.4614 38 1 5.0655 3.7529 2.5598 39 1 4.2716 -0.0192 0.1091 40 1 6.2061 -1.4171 3.8403 41 1 6.7846 -3.7577 4.6597 42 1 8.3762 -5.6101 4.3667 43 1 12.6186 -8.4465 1.8422 44 1 9.5903 -3.9731 0.6064 45 1 7.9922 -2.1256 0.8940 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001321663794.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:32:54 Heat of formation + Delta-G solvation = -51.589445 kcal Electronic energy + Delta-G solvation = -27410.338616 eV Core-core repulsion = 23394.385185 eV Total energy + Delta-G solvation = -4015.953431 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.01464 -39.56470 -38.55983 -37.17268 -36.60724 -34.39445 -33.90584 -32.59638 -32.22574 -30.27612 -29.22292 -28.31314 -25.63164 -24.86062 -24.00912 -22.41396 -21.59818 -20.98534 -20.19979 -20.09582 -18.82845 -17.95070 -17.28156 -17.09140 -16.37560 -16.27236 -15.66316 -15.46598 -14.90367 -14.55762 -14.39417 -14.15846 -14.02950 -13.74146 -13.65423 -13.61272 -13.30563 -12.94979 -12.88283 -12.61401 -12.12102 -11.97833 -11.82182 -11.78358 -11.69572 -11.60172 -11.34312 -11.29129 -11.09751 -11.03708 -10.78043 -10.47804 -9.79701 -9.77751 -9.62889 -9.37433 -9.22188 -8.75086 -8.26924 -7.01954 -6.48365 -4.05821 1.26806 1.89032 2.12096 2.17593 2.39224 3.12448 3.12890 3.16370 3.23224 3.61000 3.94841 4.22771 4.40084 4.48596 4.54451 4.62027 4.80657 4.88245 5.02380 5.05869 5.18870 5.21514 5.29386 5.43201 5.53951 5.61779 5.62279 5.67369 5.69915 5.81070 6.02900 6.04523 6.10119 6.15111 6.23507 6.25329 6.35972 6.62456 6.72114 6.88429 6.95104 7.04185 7.23606 7.37943 7.44993 7.67905 7.73957 7.96319 8.09035 8.96975 9.65347 10.69154 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.019285 B = 0.002134 C = 0.002087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.567758 B =13116.863664 C =13410.798372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.157 4.157 3 C -0.102 4.102 4 C 0.147 3.853 5 H 0.094 0.906 6 C -0.135 4.135 7 C -0.148 4.148 8 N -0.696 5.696 9 C 0.513 3.487 10 O -0.517 6.517 11 C 0.494 3.506 12 O -0.510 6.510 13 N -0.624 5.624 14 C 0.022 3.978 15 C -0.085 4.085 16 C -0.178 4.178 17 C 0.150 3.850 18 O -0.173 6.173 19 C -0.392 4.392 20 H 0.093 0.907 21 C 0.040 3.960 22 N -0.861 5.861 23 Si 0.942 3.058 24 H -0.269 1.269 25 H -0.278 1.278 26 H -0.269 1.269 27 C -0.222 4.222 28 C -0.060 4.060 29 H 0.098 0.902 30 H 0.096 0.904 31 H 0.111 0.889 32 H 0.086 0.914 33 H 0.081 0.919 34 H 0.066 0.934 35 H 0.073 0.927 36 H 0.061 0.939 37 H 0.055 0.945 38 H 0.048 0.952 39 H 0.412 0.588 40 H 0.414 0.586 41 H 0.118 0.882 42 H 0.124 0.876 43 H 0.271 0.729 44 H 0.132 0.868 45 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.155 19.105 -2.062 26.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.175 4.175 3 C -0.140 4.140 4 C 0.043 3.957 5 H 0.112 0.888 6 C -0.174 4.174 7 C -0.205 4.205 8 N -0.349 5.349 9 C 0.294 3.706 10 O -0.392 6.392 11 C 0.275 3.725 12 O -0.386 6.386 13 N -0.269 5.269 14 C -0.070 4.070 15 C -0.105 4.105 16 C -0.198 4.198 17 C 0.095 3.905 18 O -0.076 6.076 19 C -0.468 4.468 20 H 0.110 0.890 21 C -0.165 4.165 22 N -0.495 5.495 23 Si 0.766 3.234 24 H -0.194 1.194 25 H -0.203 1.203 26 H -0.194 1.194 27 C -0.242 4.242 28 C -0.080 4.080 29 H 0.116 0.884 30 H 0.114 0.886 31 H 0.129 0.871 32 H 0.104 0.896 33 H 0.100 0.900 34 H 0.085 0.915 35 H 0.092 0.908 36 H 0.080 0.920 37 H 0.074 0.926 38 H 0.067 0.933 39 H 0.249 0.751 40 H 0.250 0.750 41 H 0.136 0.864 42 H 0.142 0.858 43 H 0.081 0.919 44 H 0.149 0.851 45 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -17.982 18.699 -1.884 26.011 hybrid contribution 0.530 0.026 -0.785 0.948 sum -17.452 18.725 -2.669 25.736 Atomic orbital electron populations 1.23873 0.95882 1.01956 1.01011 1.22933 0.96123 0.98437 0.99961 1.21091 0.98040 0.96516 0.98316 1.21167 0.87855 0.86950 0.99720 0.88765 1.21995 0.99853 0.95993 0.99554 1.21823 1.00082 1.01093 0.97491 1.45817 1.39295 1.39776 1.10060 1.20090 0.82696 0.82587 0.85265 1.90765 1.64465 1.60019 1.23978 1.20087 0.82980 0.83831 0.85598 1.90776 1.64394 1.59623 1.23793 1.42843 1.39854 1.33726 1.10483 1.17238 0.97691 0.92372 0.99740 1.20389 0.98910 0.92918 0.98255 1.20006 1.00715 1.00885 0.98167 1.19444 0.90421 0.87779 0.92838 1.83965 1.41618 1.37311 1.44674 1.21307 1.11103 1.14214 1.00165 0.88973 1.25304 0.97139 0.95082 0.98959 1.70026 1.32038 1.13274 1.34161 0.85769 0.79287 0.78362 0.79978 1.19435 1.20256 1.19431 1.21088 1.03954 0.97362 1.01793 1.20833 0.92852 0.98060 0.96227 0.88398 0.88558 0.87126 0.89591 0.90039 0.91517 0.90803 0.91983 0.92603 0.93293 0.75113 0.75011 0.86445 0.85847 0.91885 0.85056 0.85682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.22 14.32 29.01 0.42 -0.80 16 2 C -0.16 -1.08 9.25 -36.03 -0.33 -1.42 16 3 C -0.10 -0.57 5.20 -27.89 -0.15 -0.71 16 4 C 0.15 1.08 2.24 -67.93 -0.15 0.93 16 5 H 0.09 0.83 7.58 -51.93 -0.39 0.43 16 6 C -0.14 -0.93 5.61 -26.73 -0.15 -1.08 16 7 C -0.15 -1.32 8.51 37.16 0.32 -1.00 16 8 N -0.70 -6.33 4.72 -54.28 -0.26 -6.59 16 9 C 0.51 6.08 6.45 -11.65 -0.08 6.00 16 10 O -0.52 -6.69 13.62 5.48 0.07 -6.62 16 11 C 0.49 7.07 7.73 -11.64 -0.09 6.98 16 12 O -0.51 -8.48 13.91 5.46 0.08 -8.40 16 13 N -0.62 -9.02 5.32 -10.27 -0.05 -9.08 16 14 C 0.02 0.39 6.30 -83.69 -0.53 -0.14 16 15 C -0.08 -1.47 9.96 -39.40 -0.39 -1.86 16 16 C -0.18 -3.65 9.98 -39.42 -0.39 -4.04 16 17 C 0.15 3.57 6.65 -39.06 -0.26 3.31 16 18 O -0.17 -4.86 9.75 0.12 0.00 -4.86 16 19 C -0.39 -10.84 9.48 30.88 0.29 -10.55 16 20 H 0.09 2.36 5.19 -52.48 -0.27 2.09 16 21 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 22 N -0.86 -24.95 13.67 55.48 0.76 -24.19 16 23 Si 0.94 20.38 29.55 -169.99 -5.02 15.35 16 24 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 25 H -0.28 -5.87 7.11 56.52 0.40 -5.46 16 26 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 27 C -0.22 -4.90 9.16 -39.42 -0.36 -5.26 16 28 C -0.06 -1.18 8.68 -39.40 -0.34 -1.52 16 29 H 0.10 0.60 8.06 -52.48 -0.42 0.18 16 30 H 0.10 0.50 7.84 -52.48 -0.41 0.09 16 31 H 0.11 0.87 8.03 -52.49 -0.42 0.45 16 32 H 0.09 0.37 7.79 -51.93 -0.40 -0.03 16 33 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 34 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.06 0.60 7.85 -51.93 -0.41 0.19 16 37 H 0.05 0.60 5.64 -51.93 -0.29 0.31 16 38 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.41 3.48 8.07 -40.82 -0.33 3.15 16 40 H 0.41 5.03 8.30 -40.82 -0.34 4.69 16 41 H 0.12 1.64 8.06 -52.49 -0.42 1.22 16 42 H 0.12 2.40 8.06 -52.49 -0.42 1.97 16 43 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 44 H 0.13 2.89 5.63 -52.48 -0.30 2.60 16 45 H 0.13 2.37 6.22 -52.49 -0.33 2.04 16 LS Contribution 380.09 15.07 5.73 5.73 Total: -1.00 -31.62 380.09 -6.98 -38.60 By element: Atomic # 1 Polarization: 16.20 SS G_CDS: -5.99 Total: 10.21 kcal Atomic # 6 Polarization: -7.86 SS G_CDS: -2.29 Total: -10.16 kcal Atomic # 7 Polarization: -40.31 SS G_CDS: 0.45 Total: -39.86 kcal Atomic # 8 Polarization: -20.03 SS G_CDS: 0.15 Total: -19.88 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -31.62 -6.98 -38.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321663794.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.987 kcal (2) G-P(sol) polarization free energy of solvation -31.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds