Wall clock time and date at job start Tue Mar 31 2020 17:32:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50701 * 119.99868 * 2 1 4 4 C 1.52994 * 109.47218 * 125.00117 * 3 2 1 5 5 H 1.09003 * 109.47310 * 304.99934 * 4 3 2 6 6 C 1.53004 * 109.47015 * 184.99971 * 4 3 2 7 7 C 1.53006 * 109.46978 * 175.00108 * 6 4 3 8 8 N 1.46504 * 109.47313 * 65.00019 * 4 3 2 9 9 C 1.34770 * 119.99861 * 205.00089 * 8 4 3 10 10 O 1.21365 * 120.00396 * 359.97438 * 9 8 4 11 11 C 1.49319 * 119.99749 * 180.27620 * 9 8 4 12 12 O 1.21395 * 120.00246 * 359.72235 * 11 9 8 13 13 N 1.34784 * 120.00097 * 179.72500 * 11 9 8 14 14 C 1.39742 * 119.99878 * 175.49744 * 13 11 9 15 15 C 1.38993 * 120.00232 * 214.86631 * 14 13 11 16 16 C 1.37975 * 119.99232 * 179.74059 * 15 14 13 17 17 C 1.38942 * 120.00288 * 0.50914 * 16 15 14 18 18 O 1.35755 * 119.98823 * 179.74737 * 17 16 15 19 19 C 1.34801 * 116.99792 * 185.36870 * 18 17 16 20 20 H 1.08004 * 120.00062 * 354.95495 * 19 18 17 21 21 C 1.38647 * 120.00363 * 174.95973 * 19 18 17 22 22 N 1.31562 * 120.00093 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00249 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47284 * 60.00248 * 23 21 19 25 25 H 1.48503 * 109.47275 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.47043 * 299.99920 * 23 21 19 27 27 C 1.38935 * 120.01305 * 359.76336 * 17 16 15 28 28 C 1.37969 * 120.00984 * 359.97438 * 27 17 16 29 29 H 1.08003 * 119.99831 * 180.02562 * 1 2 3 30 30 H 1.08003 * 120.00206 * 359.97438 * 1 2 3 31 31 H 1.07999 * 120.00181 * 179.97438 * 2 1 3 32 32 H 1.08997 * 109.47216 * 4.99907 * 3 2 1 33 33 H 1.09000 * 109.46862 * 245.00279 * 3 2 1 34 34 H 1.09004 * 109.47043 * 294.99771 * 6 4 3 35 35 H 1.08995 * 109.47443 * 55.00101 * 6 4 3 36 36 H 1.09004 * 109.46959 * 299.99714 * 7 6 4 37 37 H 1.08995 * 109.47254 * 60.00255 * 7 6 4 38 38 H 1.09003 * 109.46792 * 180.02562 * 7 6 4 39 39 H 0.96998 * 119.99456 * 24.99636 * 8 4 3 40 40 H 0.96994 * 119.99817 * 355.49013 * 13 11 9 41 41 H 1.07998 * 120.00427 * 359.97438 * 15 14 13 42 42 H 1.07998 * 119.99953 * 180.25493 * 16 15 14 43 43 H 0.96991 * 120.00246 * 179.97438 * 22 21 19 44 44 H 1.08004 * 119.99431 * 179.97438 * 27 17 16 45 45 H 1.08000 * 119.99936 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3331 1.1816 5 1 2.4883 1.1469 2.1060 6 6 3.7091 2.7047 1.2551 7 6 4.5857 2.7756 2.5072 8 7 4.0547 0.2970 1.0001 9 6 4.6912 -0.2169 2.0711 10 8 4.4201 0.1790 3.1859 11 6 5.7349 -1.2686 1.8856 12 8 6.0064 -1.6643 0.7706 13 7 6.3754 -1.7786 2.9563 14 6 7.2836 -2.8280 2.7926 15 6 7.3976 -3.8076 3.7720 16 6 8.2905 -4.8466 3.6077 17 6 9.0833 -4.9077 2.4683 18 8 9.9654 -5.9273 2.3093 19 6 10.7816 -5.8689 1.2381 20 1 10.6610 -5.0807 0.5096 21 6 11.7760 -6.8206 1.0714 22 7 11.9233 -7.7805 1.9590 23 14 12.9066 -6.7401 -0.4134 24 1 13.6424 -5.4502 -0.4059 25 1 13.8760 -7.8638 -0.3590 26 1 12.0999 -6.8427 -1.6559 27 6 8.9736 -3.9255 1.4918 28 6 8.0770 -2.8893 1.6530 29 1 -0.5400 -0.9354 0.0004 30 1 -0.5400 0.9353 0.0004 31 1 1.8500 -0.9353 0.0004 32 1 1.3586 2.1316 0.0895 33 1 2.6212 1.4026 -0.9314 34 1 4.3274 2.8536 0.3698 35 1 2.9467 3.4823 1.3008 36 1 3.9674 2.6267 3.3925 37 1 5.3481 1.9981 2.4614 38 1 5.0655 3.7529 2.5598 39 1 4.2716 -0.0192 0.1091 40 1 6.2061 -1.4171 3.8403 41 1 6.7846 -3.7577 4.6597 42 1 8.3762 -5.6101 4.3667 43 1 12.6186 -8.4465 1.8422 44 1 9.5903 -3.9731 0.6064 45 1 7.9922 -2.1256 0.8940 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001321663794.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:32:53 Heat of formation + Delta-G solvation = -72.571606 kcal Electronic energy + Delta-G solvation = -27411.248470 eV Core-core repulsion = 23394.385185 eV Total energy + Delta-G solvation = -4016.863286 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.13254 -40.91526 -40.01890 -38.21412 -37.93134 -35.60274 -34.72416 -34.17466 -33.35026 -31.91476 -30.04495 -29.65634 -27.43815 -26.05696 -24.72144 -23.97641 -22.98833 -21.78074 -21.38326 -20.59843 -20.21396 -19.58674 -18.81937 -18.33612 -17.57223 -17.29890 -16.78733 -16.29930 -16.12695 -16.06303 -15.72805 -15.50306 -15.34739 -15.12147 -14.69453 -14.65935 -14.39761 -14.23377 -14.03456 -13.58390 -13.44600 -13.38500 -13.26464 -12.77784 -12.69300 -12.67136 -12.47787 -12.35012 -12.29344 -12.15088 -11.84078 -11.70788 -11.46550 -11.11642 -10.69256 -10.56514 -10.33775 -10.07355 -9.88147 -8.70248 -8.47452 -6.14359 0.08671 0.50507 0.70837 1.27389 1.35899 1.40518 1.46187 1.51611 2.10338 2.17929 2.59817 2.79147 3.12687 3.36710 3.48619 3.71177 3.94266 4.05799 4.07952 4.10240 4.26462 4.34872 4.44605 4.50906 4.57671 4.61413 4.64639 4.79601 4.90874 5.02863 5.03982 5.04343 5.07049 5.11154 5.17565 5.26931 5.32449 5.37715 5.46526 5.49609 5.66122 5.76358 5.84194 5.92610 6.01016 6.10815 6.33923 6.74029 6.92111 6.97111 7.75022 8.74810 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.019285 B = 0.002134 C = 0.002087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.567758 B =13116.863664 C =13410.798372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.171 4.171 3 C -0.094 4.094 4 C 0.148 3.852 5 H 0.083 0.917 6 C -0.131 4.131 7 C -0.148 4.148 8 N -0.682 5.682 9 C 0.520 3.480 10 O -0.527 6.527 11 C 0.496 3.504 12 O -0.532 6.532 13 N -0.620 5.620 14 C 0.049 3.951 15 C -0.072 4.072 16 C -0.180 4.180 17 C 0.112 3.888 18 O -0.224 6.224 19 C -0.415 4.415 20 H 0.100 0.900 21 C -0.020 4.020 22 N -0.917 5.917 23 Si 1.016 2.984 24 H -0.258 1.258 25 H -0.271 1.271 26 H -0.259 1.259 27 C -0.228 4.228 28 C -0.068 4.068 29 H 0.095 0.905 30 H 0.112 0.888 31 H 0.096 0.904 32 H 0.106 0.894 33 H 0.092 0.908 34 H 0.073 0.927 35 H 0.097 0.903 36 H 0.051 0.949 37 H 0.034 0.966 38 H 0.056 0.944 39 H 0.417 0.583 40 H 0.429 0.571 41 H 0.164 0.836 42 H 0.130 0.870 43 H 0.273 0.727 44 H 0.122 0.878 45 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.360 22.091 -2.682 30.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.189 4.189 3 C -0.131 4.131 4 C 0.044 3.956 5 H 0.101 0.899 6 C -0.169 4.169 7 C -0.205 4.205 8 N -0.335 5.335 9 C 0.300 3.700 10 O -0.404 6.404 11 C 0.278 3.722 12 O -0.408 6.408 13 N -0.267 5.267 14 C -0.044 4.044 15 C -0.091 4.091 16 C -0.200 4.200 17 C 0.061 3.939 18 O -0.130 6.130 19 C -0.491 4.491 20 H 0.118 0.882 21 C -0.218 4.218 22 N -0.554 5.554 23 Si 0.836 3.164 24 H -0.182 1.182 25 H -0.195 1.195 26 H -0.183 1.183 27 C -0.248 4.248 28 C -0.088 4.088 29 H 0.114 0.886 30 H 0.130 0.870 31 H 0.114 0.886 32 H 0.124 0.876 33 H 0.110 0.890 34 H 0.092 0.908 35 H 0.115 0.885 36 H 0.070 0.930 37 H 0.053 0.947 38 H 0.075 0.925 39 H 0.254 0.746 40 H 0.268 0.732 41 H 0.181 0.819 42 H 0.148 0.852 43 H 0.083 0.917 44 H 0.140 0.860 45 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -20.258 21.759 -2.501 29.834 hybrid contribution 0.863 -0.622 -0.498 1.174 sum -19.395 21.137 -2.998 28.843 Atomic orbital electron populations 1.24034 0.95846 1.02674 1.00104 1.22984 0.96458 0.98607 1.00848 1.21073 0.97818 0.96415 0.97787 1.21315 0.87502 0.86571 1.00173 0.89932 1.21991 1.00182 0.96070 0.98691 1.21803 0.99746 1.00749 0.98202 1.45873 1.38707 1.39409 1.09519 1.19567 0.82441 0.82251 0.85788 1.90776 1.64823 1.60370 1.24426 1.20610 0.82932 0.83692 0.84935 1.90774 1.65048 1.60278 1.24721 1.42795 1.39290 1.33006 1.11606 1.17371 0.96252 0.92407 0.98393 1.20776 0.97849 0.91043 0.99463 1.20307 1.00451 1.01954 0.97253 1.19968 0.91046 0.88171 0.94700 1.83935 1.43643 1.39735 1.45685 1.21761 1.11758 1.14873 1.00684 0.88234 1.26551 0.98571 0.94410 1.02290 1.70163 1.33608 1.14772 1.36885 0.84679 0.77002 0.78872 0.75885 1.18203 1.19495 1.18323 1.21108 1.04511 0.97840 1.01292 1.20934 0.92812 0.97606 0.97443 0.88623 0.87027 0.88593 0.87551 0.88960 0.90787 0.88496 0.93002 0.94726 0.92507 0.74584 0.73225 0.81887 0.85187 0.91748 0.85989 0.84931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.02 14.32 67.78 0.97 -1.05 16 2 C -0.17 -2.01 9.25 25.65 0.24 -1.77 16 3 C -0.09 -0.75 5.20 29.85 0.16 -0.59 16 4 C 0.15 1.78 2.24 44.99 0.10 1.88 16 5 H 0.08 1.25 7.58 -2.39 -0.02 1.24 16 6 C -0.13 -1.38 5.61 30.60 0.17 -1.21 16 7 C -0.15 -2.33 8.51 71.98 0.61 -1.72 16 8 N -0.68 -10.97 4.72 -444.00 -2.09 -13.07 16 9 C 0.52 11.28 6.45 87.23 0.56 11.85 16 10 O -0.53 -12.58 13.62 -3.29 -0.04 -12.63 16 11 C 0.50 13.20 7.73 87.23 0.67 13.87 16 12 O -0.53 -16.82 13.91 -3.39 -0.05 -16.87 16 13 N -0.62 -16.32 5.32 -304.73 -1.62 -17.94 16 14 C 0.05 1.63 6.30 38.24 0.24 1.87 16 15 C -0.07 -2.32 9.96 22.39 0.22 -2.09 16 16 C -0.18 -7.35 9.98 22.38 0.22 -7.12 16 17 C 0.11 5.55 6.65 22.61 0.15 5.70 16 18 O -0.22 -13.33 9.75 -22.50 -0.22 -13.55 16 19 C -0.41 -24.13 9.48 67.92 0.64 -23.48 16 20 H 0.10 5.36 5.19 -2.91 -0.02 5.34 16 21 C -0.02 -1.14 5.49 84.83 0.47 -0.68 16 22 N -0.92 -55.82 13.67 21.61 0.30 -55.52 16 23 Si 1.02 42.90 29.55 68.60 2.03 44.93 16 24 H -0.26 -10.24 7.11 99.48 0.71 -9.54 16 25 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 26 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 27 C -0.23 -10.29 9.16 22.37 0.20 -10.08 16 28 C -0.07 -2.62 8.68 22.39 0.19 -2.43 16 29 H 0.10 1.03 8.06 -2.91 -0.02 1.00 16 30 H 0.11 0.83 7.84 -2.91 -0.02 0.80 16 31 H 0.10 1.39 8.03 -2.91 -0.02 1.37 16 32 H 0.11 0.48 7.79 -2.39 -0.02 0.46 16 33 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.07 0.71 8.14 -2.39 -0.02 0.70 16 35 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 36 H 0.05 0.91 7.85 -2.39 -0.02 0.89 16 37 H 0.03 0.68 5.64 -2.39 -0.01 0.67 16 38 H 0.06 0.78 8.14 -2.39 -0.02 0.77 16 39 H 0.42 6.16 8.07 -92.71 -0.75 5.41 16 40 H 0.43 9.05 8.30 -92.71 -0.77 8.28 16 41 H 0.16 3.83 8.06 -2.91 -0.02 3.80 16 42 H 0.13 5.07 8.06 -2.91 -0.02 5.05 16 43 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 44 H 0.12 5.63 5.63 -2.91 -0.02 5.61 16 45 H 0.13 4.92 6.22 -2.91 -0.02 4.90 16 Total: -1.00 -72.78 380.09 3.65 -69.13 By element: Atomic # 1 Polarization: 33.06 SS G_CDS: -0.48 Total: 32.58 kcal Atomic # 6 Polarization: -22.90 SS G_CDS: 5.83 Total: -17.07 kcal Atomic # 7 Polarization: -83.11 SS G_CDS: -3.42 Total: -86.53 kcal Atomic # 8 Polarization: -42.73 SS G_CDS: -0.31 Total: -43.04 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.93 kcal Total: -72.78 3.65 -69.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321663794.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.438 kcal (2) G-P(sol) polarization free energy of solvation -72.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds