Wall clock time and date at job start Tue Mar 31 2020 16:23:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.46905 * 2 1 4 4 C 1.52994 * 109.47226 * 120.00504 * 2 1 3 5 5 N 1.46496 * 109.47233 * 64.99603 * 4 2 1 6 6 C 1.47318 * 126.68715 * 89.99959 * 5 4 2 7 7 C 1.51582 * 103.59060 * 179.97438 * 6 5 4 8 8 O 1.21234 * 127.15756 * 179.97438 * 7 6 5 9 9 N 1.34764 * 105.68841 * 0.02562 * 7 6 5 10 10 C 1.46501 * 124.18138 * 180.02562 * 9 7 6 11 11 C 1.50700 * 109.46866 * 89.97437 * 10 9 7 12 12 C 1.38330 * 119.96619 * 90.00026 * 11 10 9 13 13 C 1.38275 * 120.13904 * 179.97438 * 12 11 10 14 14 C 1.38125 * 120.06845 * 359.97438 * 13 12 11 15 15 C 1.38852 * 119.93344 * 0.02562 * 14 13 12 16 16 O 1.35752 * 120.07407 * 179.97438 * 15 14 13 17 17 C 1.34833 * 116.99769 * 354.47230 * 16 15 14 18 18 H 1.08000 * 119.99625 * 5.05206 * 17 16 15 19 19 C 1.38648 * 120.00090 * 185.05727 * 17 16 15 20 20 N 1.31553 * 120.00317 * 179.97438 * 19 17 16 21 21 Si 1.86804 * 120.00122 * 359.97438 * 19 17 16 22 22 H 1.48500 * 109.46988 * 90.00127 * 21 19 17 23 23 H 1.48497 * 109.47439 * 210.00674 * 21 19 17 24 24 H 1.48499 * 109.46890 * 330.00225 * 21 19 17 25 25 C 1.38079 * 119.96628 * 269.73208 * 11 10 9 26 26 C 1.33798 * 111.64089 * 359.76217 * 9 7 6 27 27 O 1.21542 * 123.77055 * 180.25137 * 26 9 7 28 28 H 1.08998 * 109.47109 * 59.99090 * 1 2 3 29 29 H 1.08998 * 109.47337 * 179.97438 * 1 2 3 30 30 H 1.09008 * 109.46839 * 299.99735 * 1 2 3 31 31 H 1.09000 * 109.46422 * 240.00744 * 2 1 3 32 32 H 1.09004 * 109.46719 * 60.00629 * 3 2 1 33 33 H 1.09000 * 109.46548 * 180.02562 * 3 2 1 34 34 H 1.08993 * 109.47548 * 300.00213 * 3 2 1 35 35 H 1.08998 * 109.47067 * 185.00006 * 4 2 1 36 36 H 1.09003 * 109.47195 * 304.99885 * 4 2 1 37 37 H 1.08997 * 110.60045 * 298.48744 * 6 5 4 38 38 H 1.09000 * 110.59809 * 61.44269 * 6 5 4 39 39 H 1.08996 * 109.47167 * 209.97130 * 10 9 7 40 40 H 1.08992 * 109.46897 * 329.97831 * 10 9 7 41 41 H 1.07998 * 119.92941 * 359.97438 * 12 11 10 42 42 H 1.07998 * 119.96685 * 179.97438 * 13 12 11 43 43 H 1.08007 * 120.03438 * 180.02562 * 14 13 12 44 44 H 0.97003 * 120.00358 * 179.97438 * 20 19 17 45 45 H 1.08002 * 120.03469 * 359.97438 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7213 1.2491 5 7 1.6524 -2.1329 1.1904 6 6 2.4290 -3.2348 0.5963 7 6 1.5523 -4.4506 0.8223 8 8 1.7876 -5.5941 0.4954 9 7 0.4562 -3.9959 1.4611 10 6 -0.6641 -4.8427 1.8780 11 6 -0.4124 -5.3587 3.2714 12 6 -0.8525 -4.6361 4.3658 13 6 -0.6239 -5.1064 5.6458 14 6 0.0445 -6.3002 5.8354 15 6 0.4876 -7.0279 4.7390 16 8 1.1452 -8.2013 4.9220 17 6 1.4371 -8.5478 6.1919 18 1 1.0781 -7.9442 7.0124 19 6 2.1982 -9.6789 6.4445 20 7 2.4834 -10.0167 7.6835 21 14 2.8187 -10.7232 5.0254 22 1 4.1497 -10.2279 4.5913 23 1 2.9357 -12.1367 5.4651 24 1 1.8638 -10.6351 3.8915 25 6 0.2524 -6.5550 3.4542 26 6 0.5203 -2.6763 1.6726 27 8 -0.3486 -2.0392 2.2352 28 1 -0.3633 0.5140 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.8932 -0.5137 -0.8901 32 1 1.6767 1.9563 0.8901 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9564 -0.8899 35 1 3.1263 -0.6444 1.2950 36 1 1.6054 -0.2619 2.1369 37 1 2.5818 -3.0653 -0.4694 38 1 3.3843 -3.3503 1.1083 39 1 -1.5845 -4.2588 1.8676 40 1 -0.7593 -5.6835 1.1910 41 1 -1.3757 -3.7026 4.2201 42 1 -0.9683 -4.5398 6.4983 43 1 0.2224 -6.6673 6.8355 44 1 3.0155 -10.8082 7.8602 45 1 0.5916 -7.1211 2.5993 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001321949630.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:23:42 Heat of formation + Delta-G solvation = -43.772839 kcal Electronic energy + Delta-G solvation = -28602.127503 eV Core-core repulsion = 24586.513026 eV Total energy + Delta-G solvation = -4015.614477 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.39871 -39.22760 -38.72115 -37.31552 -36.64849 -35.92940 -34.34542 -32.39371 -31.22120 -29.45685 -28.64933 -27.49556 -26.73934 -25.76017 -25.07894 -22.64880 -21.81167 -21.19024 -20.47793 -20.01573 -17.87531 -17.59184 -17.40838 -16.91956 -16.66225 -15.74862 -15.35976 -15.19959 -14.89574 -14.88038 -14.74676 -14.29267 -14.13830 -13.96619 -13.78418 -13.58520 -13.28608 -13.08833 -12.68994 -12.60408 -12.55047 -12.33477 -12.23424 -11.82820 -11.66253 -11.46009 -11.30810 -11.09714 -11.02217 -10.93524 -10.80766 -10.70478 -10.22835 -10.17228 -9.75421 -9.38375 -9.15382 -8.87938 -8.27920 -7.40630 -6.41664 -4.08676 1.59916 1.67330 2.19114 2.29485 2.88793 2.99725 3.23106 3.27131 3.42709 3.92507 4.24711 4.32755 4.44836 4.46682 4.63511 4.69176 4.75518 4.81840 4.95264 5.05624 5.08568 5.14607 5.26845 5.31250 5.39077 5.44166 5.47798 5.57806 5.61556 5.70564 5.71835 5.81581 5.88754 5.90212 6.06614 6.08766 6.23585 6.29647 6.47118 6.74332 7.03194 7.09797 7.20311 7.27297 7.34266 7.55975 7.78584 8.02535 8.04034 8.93660 9.55881 10.65876 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.018839 B = 0.002893 C = 0.002731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.924820 B = 9676.358983 C =10249.324540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.116 4.116 3 C -0.145 4.145 4 C 0.155 3.845 5 N -0.628 5.628 6 C 0.062 3.938 7 C 0.520 3.480 8 O -0.463 6.463 9 N -0.570 5.570 10 C 0.168 3.832 11 C -0.086 4.086 12 C -0.175 4.175 13 C -0.081 4.081 14 C -0.210 4.210 15 C 0.154 3.846 16 O -0.217 6.217 17 C -0.390 4.390 18 H 0.106 0.894 19 C 0.064 3.936 20 N -0.880 5.880 21 Si 0.904 3.096 22 H -0.273 1.273 23 H -0.282 1.282 24 H -0.259 1.259 25 C -0.166 4.166 26 C 0.702 3.298 27 O -0.536 6.536 28 H 0.050 0.950 29 H 0.053 0.947 30 H 0.060 0.940 31 H 0.072 0.928 32 H 0.058 0.942 33 H 0.056 0.944 34 H 0.058 0.942 35 H 0.086 0.914 36 H 0.090 0.910 37 H 0.118 0.882 38 H 0.121 0.879 39 H 0.101 0.899 40 H 0.099 0.901 41 H 0.114 0.886 42 H 0.112 0.888 43 H 0.134 0.866 44 H 0.279 0.721 45 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.790 20.188 -16.564 26.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.136 4.136 3 C -0.203 4.203 4 C 0.034 3.966 5 N -0.367 5.367 6 C -0.064 4.064 7 C 0.307 3.693 8 O -0.332 6.332 9 N -0.315 5.315 10 C 0.048 3.952 11 C -0.087 4.087 12 C -0.195 4.195 13 C -0.099 4.099 14 C -0.230 4.230 15 C 0.102 3.898 16 O -0.122 6.122 17 C -0.465 4.465 18 H 0.123 0.877 19 C -0.139 4.139 20 N -0.518 5.518 21 Si 0.730 3.270 22 H -0.199 1.199 23 H -0.208 1.208 24 H -0.183 1.183 25 C -0.186 4.186 26 C 0.405 3.595 27 O -0.409 6.409 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.090 0.910 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.104 0.896 36 H 0.109 0.891 37 H 0.136 0.864 38 H 0.139 0.861 39 H 0.119 0.881 40 H 0.117 0.883 41 H 0.132 0.868 42 H 0.130 0.870 43 H 0.151 0.849 44 H 0.090 0.910 45 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -0.973 19.642 -16.424 25.622 hybrid contribution 0.420 -0.571 -0.209 0.738 sum -0.553 19.071 -16.633 25.311 Atomic orbital electron populations 1.21797 0.94266 1.02173 1.01707 1.21593 0.97174 0.96467 0.98368 1.21771 1.00936 0.95190 1.02391 1.21464 1.00128 0.75950 0.99059 1.47600 1.19771 1.08000 1.61295 1.22494 0.97115 0.84480 1.02293 1.20842 0.82056 0.89906 0.76538 1.90843 1.73977 1.19078 1.49294 1.46541 1.21514 1.09167 1.54275 1.20510 0.87150 0.93763 0.93808 1.19386 1.00509 0.95040 0.93809 1.20630 1.06065 1.00727 0.92049 1.20804 0.97367 0.95330 0.96421 1.21371 1.04609 0.97203 0.99780 1.19036 0.91856 0.85834 0.93057 1.83586 1.65925 1.31704 1.30968 1.20757 1.33668 1.11707 0.80405 0.87671 1.24455 0.95590 0.96656 0.97231 1.69645 1.37408 1.26376 1.18335 0.86192 0.79959 0.78693 0.82161 1.19870 1.20762 1.18270 1.20128 1.05728 0.97610 0.95132 1.15846 0.83121 0.81266 0.79297 1.90958 1.40877 1.63706 1.45343 0.93075 0.92771 0.92130 0.90952 0.92243 0.92449 0.92248 0.89580 0.89146 0.86395 0.86138 0.88064 0.88262 0.86799 0.87012 0.84867 0.91049 0.86190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.17 8.47 37.16 0.31 -0.85 16 2 C -0.12 -0.72 3.13 -90.62 -0.28 -1.01 16 3 C -0.14 -0.69 9.19 37.16 0.34 -0.35 16 4 C 0.16 1.09 5.57 -4.05 -0.02 1.07 16 5 N -0.63 -5.97 2.84 -180.02 -0.51 -6.48 16 6 C 0.06 0.51 7.66 -4.31 -0.03 0.48 16 7 C 0.52 6.62 8.32 -10.56 -0.09 6.54 16 8 O -0.46 -7.35 17.76 5.60 0.10 -7.25 16 9 N -0.57 -7.65 2.59 -122.03 -0.32 -7.96 16 10 C 0.17 2.35 5.82 -5.19 -0.03 2.32 16 11 C -0.09 -1.52 5.46 -104.65 -0.57 -2.09 16 12 C -0.18 -3.10 9.70 -39.53 -0.38 -3.48 16 13 C -0.08 -1.52 10.04 -39.61 -0.40 -1.92 16 14 C -0.21 -4.62 9.17 -39.40 -0.36 -4.99 16 15 C 0.15 3.64 6.65 -39.11 -0.26 3.38 16 16 O -0.22 -5.84 8.59 0.04 0.00 -5.84 16 17 C -0.39 -11.13 9.95 30.88 0.31 -10.82 16 18 H 0.11 3.06 5.44 -52.49 -0.29 2.77 16 19 C 0.06 1.82 5.49 -17.52 -0.10 1.72 16 20 N -0.88 -25.63 13.96 55.48 0.77 -24.85 16 21 Si 0.90 22.08 28.62 -169.99 -4.86 17.22 16 22 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 23 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 24 H -0.26 -6.38 7.11 56.52 0.40 -5.98 16 25 C -0.17 -3.41 9.64 -39.39 -0.38 -3.79 16 26 C 0.70 9.13 6.98 -88.02 -0.61 8.52 16 27 O -0.54 -8.23 16.13 5.33 0.09 -8.14 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.05 0.56 6.19 -51.93 -0.32 0.24 16 30 H 0.06 0.55 8.14 -51.92 -0.42 0.13 16 31 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 33 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 34 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 35 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 36 H 0.09 0.74 8.03 -51.93 -0.42 0.32 16 37 H 0.12 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.12 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.10 1.28 7.81 -51.93 -0.41 0.88 16 40 H 0.10 1.29 7.94 -51.93 -0.41 0.88 16 41 H 0.11 1.87 8.06 -52.49 -0.42 1.44 16 42 H 0.11 1.80 8.06 -52.49 -0.42 1.38 16 43 H 0.13 3.06 5.64 -52.48 -0.30 2.76 16 44 H 0.28 7.51 8.31 -40.82 -0.34 7.17 16 45 H 0.12 2.44 8.06 -52.49 -0.42 2.02 16 LS Contribution 379.84 15.07 5.72 5.72 Total: -1.00 -33.25 379.84 -7.91 -41.16 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -6.35 Total: 1.70 kcal Atomic # 6 Polarization: -2.72 SS G_CDS: -2.56 Total: -5.27 kcal Atomic # 7 Polarization: -39.24 SS G_CDS: -0.05 Total: -39.29 kcal Atomic # 8 Polarization: -21.42 SS G_CDS: 0.19 Total: -21.23 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -4.86 Total: 17.22 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -33.25 -7.91 -41.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321949630.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.616 kcal (2) G-P(sol) polarization free energy of solvation -33.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds