Wall clock time and date at job start Tue Mar 31 2020 16:23:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.46905 * 2 1 4 4 C 1.52994 * 109.47226 * 120.00504 * 2 1 3 5 5 N 1.46496 * 109.47233 * 64.99603 * 4 2 1 6 6 C 1.47318 * 126.68715 * 89.99959 * 5 4 2 7 7 C 1.51582 * 103.59060 * 179.97438 * 6 5 4 8 8 O 1.21234 * 127.15756 * 179.97438 * 7 6 5 9 9 N 1.34764 * 105.68841 * 0.02562 * 7 6 5 10 10 C 1.46501 * 124.18138 * 180.02562 * 9 7 6 11 11 C 1.50700 * 109.46866 * 89.97437 * 10 9 7 12 12 C 1.38330 * 119.96619 * 90.00026 * 11 10 9 13 13 C 1.38275 * 120.13904 * 179.97438 * 12 11 10 14 14 C 1.38125 * 120.06845 * 359.97438 * 13 12 11 15 15 C 1.38852 * 119.93344 * 0.02562 * 14 13 12 16 16 O 1.35752 * 120.07407 * 179.97438 * 15 14 13 17 17 C 1.34833 * 116.99769 * 354.47230 * 16 15 14 18 18 H 1.08000 * 119.99625 * 5.05206 * 17 16 15 19 19 C 1.38648 * 120.00090 * 185.05727 * 17 16 15 20 20 N 1.31553 * 120.00317 * 179.97438 * 19 17 16 21 21 Si 1.86804 * 120.00122 * 359.97438 * 19 17 16 22 22 H 1.48500 * 109.46988 * 90.00127 * 21 19 17 23 23 H 1.48497 * 109.47439 * 210.00674 * 21 19 17 24 24 H 1.48499 * 109.46890 * 330.00225 * 21 19 17 25 25 C 1.38079 * 119.96628 * 269.73208 * 11 10 9 26 26 C 1.33798 * 111.64089 * 359.76217 * 9 7 6 27 27 O 1.21542 * 123.77055 * 180.25137 * 26 9 7 28 28 H 1.08998 * 109.47109 * 59.99090 * 1 2 3 29 29 H 1.08998 * 109.47337 * 179.97438 * 1 2 3 30 30 H 1.09008 * 109.46839 * 299.99735 * 1 2 3 31 31 H 1.09000 * 109.46422 * 240.00744 * 2 1 3 32 32 H 1.09004 * 109.46719 * 60.00629 * 3 2 1 33 33 H 1.09000 * 109.46548 * 180.02562 * 3 2 1 34 34 H 1.08993 * 109.47548 * 300.00213 * 3 2 1 35 35 H 1.08998 * 109.47067 * 185.00006 * 4 2 1 36 36 H 1.09003 * 109.47195 * 304.99885 * 4 2 1 37 37 H 1.08997 * 110.60045 * 298.48744 * 6 5 4 38 38 H 1.09000 * 110.59809 * 61.44269 * 6 5 4 39 39 H 1.08996 * 109.47167 * 209.97130 * 10 9 7 40 40 H 1.08992 * 109.46897 * 329.97831 * 10 9 7 41 41 H 1.07998 * 119.92941 * 359.97438 * 12 11 10 42 42 H 1.07998 * 119.96685 * 179.97438 * 13 12 11 43 43 H 1.08007 * 120.03438 * 180.02562 * 14 13 12 44 44 H 0.97003 * 120.00358 * 179.97438 * 20 19 17 45 45 H 1.08002 * 120.03469 * 359.97438 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7213 1.2491 5 7 1.6524 -2.1329 1.1904 6 6 2.4290 -3.2348 0.5963 7 6 1.5523 -4.4506 0.8223 8 8 1.7876 -5.5941 0.4954 9 7 0.4562 -3.9959 1.4611 10 6 -0.6641 -4.8427 1.8780 11 6 -0.4124 -5.3587 3.2714 12 6 -0.8525 -4.6361 4.3658 13 6 -0.6239 -5.1064 5.6458 14 6 0.0445 -6.3002 5.8354 15 6 0.4876 -7.0279 4.7390 16 8 1.1452 -8.2013 4.9220 17 6 1.4371 -8.5478 6.1919 18 1 1.0781 -7.9442 7.0124 19 6 2.1982 -9.6789 6.4445 20 7 2.4834 -10.0167 7.6835 21 14 2.8187 -10.7232 5.0254 22 1 4.1497 -10.2279 4.5913 23 1 2.9357 -12.1367 5.4651 24 1 1.8638 -10.6351 3.8915 25 6 0.2524 -6.5550 3.4542 26 6 0.5203 -2.6763 1.6726 27 8 -0.3486 -2.0392 2.2352 28 1 -0.3633 0.5140 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.8932 -0.5137 -0.8901 32 1 1.6767 1.9563 0.8901 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9564 -0.8899 35 1 3.1263 -0.6444 1.2950 36 1 1.6054 -0.2619 2.1369 37 1 2.5818 -3.0653 -0.4694 38 1 3.3843 -3.3503 1.1083 39 1 -1.5845 -4.2588 1.8676 40 1 -0.7593 -5.6835 1.1910 41 1 -1.3757 -3.7026 4.2201 42 1 -0.9683 -4.5398 6.4983 43 1 0.2224 -6.6673 6.8355 44 1 3.0155 -10.8082 7.8602 45 1 0.5916 -7.1211 2.5993 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001321949630.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:23:40 Heat of formation + Delta-G solvation = -63.593108 kcal Electronic energy + Delta-G solvation = -28602.986975 eV Core-core repulsion = 24586.513026 eV Total energy + Delta-G solvation = -4016.473949 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.93 seconds Orbital eigenvalues (eV) -43.34894 -40.96270 -39.73984 -38.71591 -37.69465 -36.93431 -35.28068 -34.48586 -32.54970 -31.10891 -29.55245 -28.07369 -27.75984 -27.21802 -26.54135 -23.69383 -23.29032 -22.63575 -21.35296 -20.89486 -19.73614 -19.15586 -18.39363 -18.07726 -17.66674 -16.92146 -16.70830 -16.54351 -16.16412 -15.88445 -15.71844 -15.63032 -15.50025 -15.34926 -15.04251 -14.68737 -14.48567 -14.27694 -14.19827 -13.87537 -13.67445 -13.20104 -13.17413 -13.03080 -12.85140 -12.72218 -12.61753 -12.46864 -12.22222 -11.99456 -11.91055 -11.78964 -11.56987 -11.44185 -11.23409 -10.95234 -10.84589 -9.90449 -9.86070 -9.18505 -8.53341 -6.26383 0.21764 0.57749 0.66231 1.22131 1.28662 1.32920 1.49529 1.96210 2.07088 2.25352 2.71423 2.95023 3.05579 3.10907 3.66656 3.77447 3.89967 3.97053 4.05659 4.16934 4.24097 4.27966 4.30510 4.35553 4.42032 4.47782 4.60036 4.61734 4.65398 4.80014 4.83193 4.88501 4.98323 5.01725 5.11277 5.15229 5.26589 5.32117 5.38585 5.45508 5.54774 5.60780 5.62862 5.69463 5.83605 6.13375 6.14889 6.38207 6.80807 7.07789 7.53950 8.58099 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.018839 B = 0.002893 C = 0.002731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.924820 B = 9676.358983 C =10249.324540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.109 4.109 3 C -0.141 4.141 4 C 0.150 3.850 5 N -0.617 5.617 6 C 0.073 3.927 7 C 0.511 3.489 8 O -0.501 6.501 9 N -0.577 5.577 10 C 0.168 3.832 11 C -0.074 4.074 12 C -0.156 4.156 13 C -0.076 4.076 14 C -0.225 4.225 15 C 0.120 3.880 16 O -0.244 6.244 17 C -0.401 4.401 18 H 0.083 0.917 19 C 0.014 3.986 20 N -0.920 5.920 21 Si 0.967 3.033 22 H -0.266 1.266 23 H -0.264 1.264 24 H -0.266 1.266 25 C -0.167 4.167 26 C 0.695 3.305 27 O -0.565 6.565 28 H 0.058 0.942 29 H 0.031 0.969 30 H 0.045 0.955 31 H 0.085 0.915 32 H 0.054 0.946 33 H 0.072 0.928 34 H 0.061 0.939 35 H 0.119 0.881 36 H 0.076 0.924 37 H 0.158 0.842 38 H 0.145 0.855 39 H 0.119 0.881 40 H 0.108 0.892 41 H 0.139 0.861 42 H 0.143 0.857 43 H 0.114 0.886 44 H 0.286 0.714 45 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.075 22.632 -19.169 29.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.129 4.129 3 C -0.199 4.199 4 C 0.030 3.970 5 N -0.355 5.355 6 C -0.052 4.052 7 C 0.301 3.699 8 O -0.373 6.373 9 N -0.321 5.321 10 C 0.047 3.953 11 C -0.075 4.075 12 C -0.175 4.175 13 C -0.094 4.094 14 C -0.244 4.244 15 C 0.071 3.929 16 O -0.152 6.152 17 C -0.477 4.477 18 H 0.101 0.899 19 C -0.185 4.185 20 N -0.561 5.561 21 Si 0.789 3.211 22 H -0.191 1.191 23 H -0.188 1.188 24 H -0.191 1.191 25 C -0.186 4.186 26 C 0.398 3.602 27 O -0.441 6.441 28 H 0.077 0.923 29 H 0.050 0.950 30 H 0.064 0.936 31 H 0.103 0.897 32 H 0.073 0.927 33 H 0.091 0.909 34 H 0.080 0.920 35 H 0.137 0.863 36 H 0.095 0.905 37 H 0.175 0.825 38 H 0.163 0.837 39 H 0.137 0.863 40 H 0.127 0.873 41 H 0.156 0.844 42 H 0.160 0.840 43 H 0.132 0.868 44 H 0.095 0.905 45 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -0.247 22.150 -19.051 29.216 hybrid contribution 0.030 -1.011 0.515 1.135 sum -0.217 21.139 -18.535 28.115 Atomic orbital electron populations 1.21768 0.96069 1.00541 1.01359 1.21555 0.95469 0.97494 0.98378 1.21742 1.01895 0.93969 1.02322 1.21740 1.01982 0.74364 0.98933 1.47774 1.18536 1.09114 1.60102 1.22702 0.96304 0.81417 1.04805 1.21609 0.82194 0.90651 0.75490 1.90830 1.74709 1.20963 1.50809 1.46588 1.21639 1.09501 1.54369 1.20498 0.88414 0.94698 0.91646 1.19763 0.98232 0.93472 0.96036 1.20985 1.04162 1.00910 0.91415 1.21124 0.96029 0.94042 0.98229 1.21381 1.05860 0.98634 0.98574 1.19538 0.92801 0.85827 0.94776 1.83534 1.68169 1.33800 1.29667 1.20715 1.34122 1.11963 0.80878 0.89929 1.25228 0.95852 0.97765 0.99686 1.69718 1.38916 1.27490 1.19941 0.85275 0.79213 0.77869 0.78725 1.19083 1.18843 1.19086 1.20254 1.06017 0.98595 0.93779 1.16016 0.83852 0.80928 0.79454 1.90934 1.42131 1.64102 1.46925 0.92297 0.94954 0.93625 0.89680 0.92733 0.90866 0.91977 0.86300 0.90522 0.82492 0.83743 0.86285 0.87350 0.84350 0.83957 0.86848 0.90474 0.86357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.06 8.47 71.98 0.61 -1.45 16 2 C -0.11 -1.01 3.13 -10.79 -0.03 -1.04 16 3 C -0.14 -0.90 9.19 71.98 0.66 -0.24 16 4 C 0.15 1.60 5.57 86.38 0.48 2.08 16 5 N -0.62 -9.73 2.84 -841.88 -2.39 -12.11 16 6 C 0.07 0.90 7.66 85.76 0.66 1.56 16 7 C 0.51 11.92 8.32 87.94 0.73 12.66 16 8 O -0.50 -15.34 17.76 -2.89 -0.05 -15.39 16 9 N -0.58 -14.28 2.59 -777.23 -2.01 -16.29 16 10 C 0.17 4.40 5.82 85.63 0.50 4.90 16 11 C -0.07 -2.49 5.46 -19.88 -0.11 -2.60 16 12 C -0.16 -5.15 9.70 22.30 0.22 -4.93 16 13 C -0.08 -2.77 10.04 22.25 0.22 -2.54 16 14 C -0.23 -10.18 9.17 22.39 0.21 -9.98 16 15 C 0.12 5.83 6.65 22.58 0.15 5.98 16 16 O -0.24 -13.72 8.59 -22.79 -0.20 -13.92 16 17 C -0.40 -24.06 9.95 67.92 0.68 -23.38 16 18 H 0.08 5.16 5.44 -2.91 -0.02 5.14 16 19 C 0.01 0.79 5.49 84.83 0.47 1.26 16 20 N -0.92 -55.45 13.96 21.61 0.30 -55.15 16 21 Si 0.97 46.56 28.62 68.60 1.96 48.53 16 22 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 23 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 24 H -0.27 -13.00 7.11 99.48 0.71 -12.29 16 25 C -0.17 -6.87 9.64 22.39 0.22 -6.66 16 26 C 0.69 16.50 6.98 179.44 1.25 17.75 16 27 O -0.57 -16.35 16.13 -3.85 -0.06 -16.41 16 28 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.03 0.61 6.19 -2.39 -0.01 0.60 16 30 H 0.04 0.79 8.14 -2.38 -0.02 0.77 16 31 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.05 0.41 8.14 -2.39 -0.02 0.39 16 33 H 0.07 0.26 8.14 -2.39 -0.02 0.24 16 34 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 35 H 0.12 0.54 8.14 -2.39 -0.02 0.52 16 36 H 0.08 1.08 8.03 -2.39 -0.02 1.06 16 37 H 0.16 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.15 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.12 2.71 7.81 -2.39 -0.02 2.69 16 40 H 0.11 2.66 7.94 -2.39 -0.02 2.64 16 41 H 0.14 4.04 8.06 -2.91 -0.02 4.02 16 42 H 0.14 4.27 8.06 -2.91 -0.02 4.24 16 43 H 0.11 5.55 5.64 -2.91 -0.02 5.54 16 44 H 0.29 15.75 8.31 -92.71 -0.77 14.98 16 45 H 0.12 4.88 8.06 -2.91 -0.02 4.86 16 Total: -1.00 -76.36 379.84 5.46 -70.90 By element: Atomic # 1 Polarization: 15.50 SS G_CDS: 1.00 Total: 16.50 kcal Atomic # 6 Polarization: -13.54 SS G_CDS: 6.90 Total: -6.64 kcal Atomic # 7 Polarization: -79.46 SS G_CDS: -4.10 Total: -83.55 kcal Atomic # 8 Polarization: -45.42 SS G_CDS: -0.31 Total: -45.73 kcal Atomic # 14 Polarization: 46.56 SS G_CDS: 1.96 Total: 48.53 kcal Total: -76.36 5.46 -70.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321949630.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.306 kcal (2) G-P(sol) polarization free energy of solvation -76.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.93 seconds