Wall clock time and date at job start Tue Mar 31 2020 16:27:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.50704 * 119.99662 * 2 1 4 4 C 1.31000 * 120.00063 * 180.02562 * 2 1 3 5 5 C 1.50701 * 119.99950 * 356.04974 * 4 2 1 6 6 N 1.46502 * 109.46808 * 126.67851 * 5 4 2 7 7 C 1.34779 * 119.99880 * 179.97438 * 6 5 4 8 8 O 1.21351 * 119.99832 * 0.02562 * 7 6 5 9 9 C 1.49452 * 119.99908 * 180.02562 * 7 6 5 10 10 O 1.21351 * 120.00260 * 0.02562 * 9 7 6 11 11 N 1.34779 * 119.99908 * 180.02562 * 9 7 6 12 12 C 1.46502 * 120.00064 * 180.02562 * 11 9 7 13 13 C 1.50701 * 109.46992 * 180.02562 * 12 11 9 14 14 C 1.38297 * 119.93000 * 89.99939 * 13 12 11 15 15 C 1.38097 * 120.07047 * 179.97438 * 14 13 12 16 16 C 1.38885 * 119.92761 * 0.02659 * 15 14 13 17 17 O 1.35750 * 120.06403 * 180.02562 * 16 15 14 18 18 C 1.34826 * 117.00329 * 5.51732 * 17 16 15 19 19 H 1.07996 * 120.00334 * 354.94330 * 18 17 16 20 20 C 1.38660 * 119.99695 * 174.94659 * 18 17 16 21 21 N 1.31554 * 120.00221 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 119.99927 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47150 * 59.99505 * 22 20 18 24 24 H 1.48493 * 109.47209 * 179.97438 * 22 20 18 25 25 H 1.48503 * 109.47054 * 300.00174 * 22 20 18 26 26 C 1.38871 * 119.86146 * 0.26833 * 16 15 14 27 27 C 1.38102 * 119.93184 * 359.45240 * 26 16 15 28 28 H 1.09002 * 109.47218 * 185.40602 * 1 2 3 29 29 H 1.08998 * 109.47334 * 305.40320 * 1 2 3 30 30 H 1.09001 * 109.47841 * 65.40484 * 1 2 3 31 31 H 1.09003 * 109.46748 * 269.99739 * 3 2 1 32 32 H 1.08998 * 109.47223 * 30.00201 * 3 2 1 33 33 H 1.08994 * 109.46619 * 150.00320 * 3 2 1 34 34 H 1.07999 * 119.99824 * 176.04873 * 4 2 1 35 35 H 1.08998 * 109.47173 * 6.68321 * 5 4 2 36 36 H 1.08997 * 109.47247 * 246.67854 * 5 4 2 37 37 H 0.97001 * 120.00568 * 0.02562 * 6 5 4 38 38 H 0.97001 * 119.99552 * 0.02562 * 11 9 7 39 39 H 1.08998 * 109.47076 * 60.00068 * 12 11 9 40 40 H 1.08997 * 109.46828 * 299.99916 * 12 11 9 41 41 H 1.08003 * 119.97018 * 359.97438 * 14 13 12 42 42 H 1.08003 * 120.03724 * 179.97438 * 15 14 13 43 43 H 0.97003 * 120.00080 * 180.02562 * 21 20 18 44 44 H 1.08004 * 120.03480 * 179.72902 * 26 16 15 45 45 H 1.07997 * 119.96569 * 180.26936 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2604 1.3052 0.0000 4 6 2.1620 -1.1345 -0.0005 5 6 1.4112 -2.4381 0.0888 6 7 1.8155 -3.3111 -1.0160 7 6 1.2712 -4.5379 -1.1393 8 8 0.4459 -4.9191 -0.3355 9 6 1.6841 -5.4288 -2.2661 10 8 2.5097 -5.0477 -3.0696 11 7 1.1394 -6.6554 -2.3897 12 6 1.5445 -7.5289 -3.4939 13 6 0.7930 -8.8321 -3.4051 14 6 -0.4243 -8.9718 -4.0463 15 6 -1.1151 -10.1650 -3.9673 16 6 -0.5863 -11.2251 -3.2424 17 8 -1.2628 -12.3993 -3.1633 18 6 -2.3845 -12.5107 -3.9031 19 1 -2.7520 -11.6603 -4.4581 20 6 -3.0662 -13.7172 -3.9513 21 7 -2.6183 -14.7533 -3.2756 22 14 -4.6206 -13.8714 -4.9758 23 1 -4.3074 -13.5791 -6.3977 24 1 -5.1544 -15.2523 -4.8607 25 1 -5.6355 -12.9052 -4.4839 26 6 0.6333 -11.0796 -2.5945 27 6 1.3221 -9.8858 -2.6821 28 1 -0.3634 -1.0231 0.0968 29 1 -0.3634 0.5953 0.8376 30 1 -0.3635 0.4277 -0.9344 31 1 2.4421 1.6198 -1.0277 32 1 1.6713 2.0648 0.5138 33 1 3.2128 1.1748 0.5138 34 1 3.2401 -1.1355 -0.0650 35 1 0.3402 -2.2455 0.0264 36 1 1.6384 -2.9240 1.0377 37 1 2.4755 -3.0066 -1.6583 38 1 0.4791 -6.9597 -1.7476 39 1 2.6155 -7.7215 -3.4306 40 1 1.3181 -7.0433 -4.4431 41 1 -0.8352 -8.1470 -4.6096 42 1 -2.0659 -10.2733 -4.4680 43 1 -3.0950 -15.5974 -3.3097 44 1 1.0450 -11.9007 -2.0264 45 1 2.2727 -9.7735 -2.1821 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001322523570.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:27:30 Heat of formation + Delta-G solvation = -58.382939 kcal Electronic energy + Delta-G solvation = -26256.177418 eV Core-core repulsion = 22239.929399 eV Total energy + Delta-G solvation = -4016.248019 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.72126 -39.25874 -38.66502 -37.45354 -36.91787 -35.03367 -34.14699 -32.38182 -30.33076 -30.12403 -29.64121 -28.26916 -26.49743 -25.47185 -24.59577 -22.86643 -22.07656 -20.70552 -20.55733 -19.18440 -18.09664 -17.94479 -17.09852 -16.99129 -16.39574 -15.90155 -15.52772 -15.42794 -14.80380 -14.67312 -14.49438 -14.44193 -14.20983 -13.98820 -13.79114 -13.64710 -13.43281 -12.96313 -12.85141 -12.80248 -12.72645 -12.37538 -12.13399 -12.06822 -11.80740 -11.70396 -11.39678 -11.27754 -10.96752 -10.82971 -10.73894 -10.50581 -9.86861 -9.58446 -9.44796 -9.20489 -9.15750 -8.91399 -8.30008 -7.35169 -6.53514 -4.12404 1.33239 1.45525 1.96249 2.12190 2.54739 3.09176 3.10022 3.13095 3.13169 3.68547 3.90209 4.16334 4.38080 4.43127 4.55125 4.62095 4.98183 5.00840 5.05197 5.10347 5.14604 5.18767 5.19753 5.27113 5.33421 5.34604 5.48930 5.58189 5.62414 5.74796 5.79152 5.90738 6.10731 6.13891 6.23520 6.32348 6.35065 6.57655 6.77955 6.83233 6.94448 7.11576 7.24191 7.32280 7.34171 7.64601 7.69732 7.90877 7.92829 8.91537 9.59141 10.63743 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.023045 B = 0.001696 C = 0.001639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.708503 B =16503.907068 C =17077.099994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.101 4.101 3 C -0.121 4.121 4 C -0.192 4.192 5 C 0.139 3.861 6 N -0.700 5.700 7 C 0.505 3.495 8 O -0.518 6.518 9 C 0.502 3.498 10 O -0.530 6.530 11 N -0.687 5.687 12 C 0.177 3.823 13 C -0.220 4.220 14 C -0.048 4.048 15 C -0.237 4.237 16 C 0.162 3.838 17 O -0.172 6.172 18 C -0.394 4.394 19 H 0.093 0.907 20 C 0.041 3.959 21 N -0.858 5.858 22 Si 0.942 3.058 23 H -0.269 1.269 24 H -0.277 1.277 25 H -0.269 1.269 26 C -0.195 4.195 27 C -0.052 4.052 28 H 0.076 0.924 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.118 0.882 35 H 0.088 0.912 36 H 0.080 0.920 37 H 0.413 0.587 38 H 0.414 0.586 39 H 0.073 0.927 40 H 0.073 0.927 41 H 0.109 0.891 42 H 0.129 0.871 43 H 0.272 0.728 44 H 0.119 0.881 45 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.141 26.516 4.578 28.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.102 4.102 3 C -0.178 4.178 4 C -0.210 4.210 5 C 0.017 3.983 6 N -0.354 5.354 7 C 0.286 3.714 8 O -0.393 6.393 9 C 0.282 3.718 10 O -0.408 6.408 11 N -0.340 5.340 12 C 0.056 3.944 13 C -0.222 4.222 14 C -0.067 4.067 15 C -0.256 4.256 16 C 0.107 3.893 17 O -0.074 6.074 18 C -0.470 4.470 19 H 0.111 0.889 20 C -0.164 4.164 21 N -0.492 5.492 22 Si 0.767 3.233 23 H -0.194 1.194 24 H -0.202 1.202 25 H -0.194 1.194 26 C -0.214 4.214 27 C -0.071 4.071 28 H 0.094 0.906 29 H 0.088 0.912 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.136 0.864 35 H 0.105 0.895 36 H 0.098 0.902 37 H 0.249 0.751 38 H 0.251 0.749 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.127 0.873 42 H 0.147 0.853 43 H 0.082 0.918 44 H 0.137 0.863 45 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 8.086 26.007 4.753 27.647 hybrid contribution -0.752 -0.077 -0.514 0.914 sum 7.335 25.930 4.239 27.279 Atomic orbital electron populations 1.21174 0.92134 1.03551 1.02624 1.21733 0.96101 0.95119 0.97287 1.20866 0.99774 0.94689 1.02467 1.22616 0.99965 0.92875 1.05581 1.20735 0.99726 0.87889 0.89970 1.45790 1.44340 1.14784 1.30460 1.20327 0.82207 0.82829 0.86071 1.90788 1.31889 1.73873 1.42770 1.20065 0.82680 0.83253 0.85786 1.90747 1.32678 1.74210 1.43133 1.46253 1.43016 1.14142 1.30580 1.20143 0.98360 0.87330 0.88591 1.19137 0.98793 0.95246 1.08998 1.20638 0.93249 0.96301 0.96497 1.21157 1.03030 0.94034 1.07422 1.19449 0.90839 0.86785 0.92226 1.83975 1.35613 1.29159 1.58660 1.21321 1.00233 0.98554 1.26933 0.88920 1.25322 0.99453 0.94174 0.97449 1.70025 1.39046 1.01714 1.38447 0.85758 0.79941 0.78068 0.79564 1.19410 1.20192 1.19412 1.20209 0.95206 0.98892 1.07122 1.20530 0.98134 0.92001 0.96412 0.90561 0.91212 0.91036 0.91093 0.91553 0.91547 0.86371 0.89468 0.90186 0.75076 0.74884 0.90861 0.90916 0.87316 0.85345 0.91796 0.86286 0.86871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.74 9.93 36.00 0.36 -0.38 16 2 C -0.10 -0.58 6.05 -101.07 -0.61 -1.19 16 3 C -0.12 -0.51 10.03 36.01 0.36 -0.15 16 4 C -0.19 -1.18 9.22 -36.03 -0.33 -1.52 16 5 C 0.14 1.09 5.93 -5.19 -0.03 1.06 16 6 N -0.70 -6.54 5.54 -61.91 -0.34 -6.88 16 7 C 0.51 6.17 7.89 -11.58 -0.09 6.07 16 8 O -0.52 -7.52 16.48 5.50 0.09 -7.43 16 9 C 0.50 6.60 7.89 -11.58 -0.09 6.51 16 10 O -0.53 -7.76 16.48 5.50 0.09 -7.67 16 11 N -0.69 -9.02 5.54 -61.91 -0.34 -9.36 16 12 C 0.18 2.39 5.80 -5.19 -0.03 2.36 16 13 C -0.22 -3.51 5.25 -104.58 -0.55 -4.06 16 14 C -0.05 -0.83 9.69 -39.61 -0.38 -1.21 16 15 C -0.24 -4.91 9.17 -39.39 -0.36 -5.28 16 16 C 0.16 3.77 6.65 -39.11 -0.26 3.51 16 17 O -0.17 -4.77 9.76 0.06 0.00 -4.77 16 18 C -0.39 -10.74 9.49 30.89 0.29 -10.44 16 19 H 0.09 2.32 5.20 -52.49 -0.27 2.04 16 20 C 0.04 1.11 5.49 -17.51 -0.10 1.01 16 21 N -0.86 -24.63 13.67 55.48 0.76 -23.87 16 22 Si 0.94 20.04 29.55 -169.99 -5.02 15.02 16 23 H -0.27 -5.55 7.11 56.52 0.40 -5.14 16 24 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 25 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 26 C -0.19 -3.93 9.99 -39.40 -0.39 -4.33 16 27 C -0.05 -0.87 9.69 -39.61 -0.38 -1.26 16 28 H 0.08 0.45 4.95 -51.93 -0.26 0.19 16 29 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 32 H 0.07 0.24 8.12 -51.93 -0.42 -0.18 16 33 H 0.07 0.25 8.06 -51.93 -0.42 -0.17 16 34 H 0.12 0.63 8.05 -52.49 -0.42 0.21 16 35 H 0.09 0.70 4.96 -51.93 -0.26 0.45 16 36 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.41 3.40 7.94 -40.82 -0.32 3.08 16 38 H 0.41 5.48 7.94 -40.82 -0.32 5.15 16 39 H 0.07 0.96 8.08 -51.93 -0.42 0.54 16 40 H 0.07 0.96 8.08 -51.93 -0.42 0.54 16 41 H 0.11 1.61 8.06 -52.48 -0.42 1.19 16 42 H 0.13 2.67 5.64 -52.48 -0.30 2.38 16 43 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 44 H 0.12 2.33 8.06 -52.48 -0.42 1.90 16 45 H 0.11 1.60 8.06 -52.49 -0.42 1.17 16 LS Contribution 388.58 15.07 5.86 5.86 Total: -1.00 -31.38 388.58 -7.45 -38.83 By element: Atomic # 1 Polarization: 15.51 SS G_CDS: -5.93 Total: 9.58 kcal Atomic # 6 Polarization: -6.68 SS G_CDS: -2.60 Total: -9.29 kcal Atomic # 7 Polarization: -40.19 SS G_CDS: 0.07 Total: -40.12 kcal Atomic # 8 Polarization: -20.05 SS G_CDS: 0.18 Total: -19.87 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.02 Total: 15.02 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -31.38 -7.45 -38.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322523570.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.554 kcal (2) G-P(sol) polarization free energy of solvation -31.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds