Wall clock time and date at job start Tue Mar 31 2020 16:27:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.50706 * 120.00034 * 2 1 4 4 C 1.30997 * 120.00243 * 179.97438 * 2 1 3 5 5 C 1.50703 * 120.00054 * 352.97094 * 4 2 1 6 6 N 1.46494 * 109.47223 * 233.05888 * 5 4 2 7 7 C 1.34776 * 120.00269 * 180.02562 * 6 5 4 8 8 O 1.21355 * 119.99643 * 359.97438 * 7 6 5 9 9 C 1.49452 * 120.00387 * 180.02562 * 7 6 5 10 10 O 1.21351 * 119.99575 * 359.97438 * 9 7 6 11 11 N 1.34773 * 119.99979 * 179.97438 * 9 7 6 12 12 C 1.46504 * 119.99748 * 179.97438 * 11 9 7 13 13 C 1.50703 * 109.46736 * 179.97438 * 12 11 9 14 14 C 1.38324 * 119.96540 * 269.97296 * 13 12 11 15 15 C 1.38270 * 120.14055 * 180.02562 * 14 13 12 16 16 C 1.38132 * 120.06947 * 359.68262 * 15 14 13 17 17 C 1.38862 * 119.92503 * 0.59213 * 16 15 14 18 18 O 1.35748 * 120.06460 * 179.69813 * 17 16 15 19 19 C 1.34830 * 117.00202 * 354.59865 * 18 17 16 20 20 H 1.07995 * 119.99936 * 354.90039 * 19 18 17 21 21 C 1.38659 * 119.99586 * 174.90342 * 19 18 17 22 22 N 1.31551 * 120.00484 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99459 * 179.97438 * 21 19 18 24 24 H 1.48494 * 109.47081 * 90.00278 * 23 21 19 25 25 H 1.48509 * 109.47223 * 210.00164 * 23 21 19 26 26 H 1.48496 * 109.47355 * 330.00133 * 23 21 19 27 27 C 1.38080 * 119.96792 * 90.00014 * 13 12 11 28 28 H 1.08999 * 109.46882 * 265.78992 * 1 2 3 29 29 H 1.09003 * 109.47222 * 25.79059 * 1 2 3 30 30 H 1.08996 * 109.46971 * 145.78753 * 1 2 3 31 31 H 1.08994 * 109.47088 * 270.00256 * 3 2 1 32 32 H 1.09006 * 109.46956 * 29.99807 * 3 2 1 33 33 H 1.08999 * 109.47397 * 149.99748 * 3 2 1 34 34 H 1.08005 * 120.00165 * 172.96793 * 4 2 1 35 35 H 1.08998 * 109.47022 * 113.05295 * 5 4 2 36 36 H 1.09001 * 109.46798 * 353.05510 * 5 4 2 37 37 H 0.97007 * 120.00144 * 359.97438 * 6 5 4 38 38 H 0.97000 * 120.00389 * 359.97438 * 11 9 7 39 39 H 1.08995 * 109.47136 * 59.99912 * 12 11 9 40 40 H 1.09001 * 109.47041 * 299.99433 * 12 11 9 41 41 H 1.08006 * 119.92721 * 0.02662 * 14 13 12 42 42 H 1.07996 * 119.96829 * 179.97438 * 15 14 13 43 43 H 1.07999 * 120.03929 * 180.31922 * 16 15 14 44 44 H 0.97000 * 120.00485 * 180.02562 * 22 21 19 45 45 H 1.07995 * 120.03035 * 359.97438 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1620 -1.1344 0.0005 5 6 1.4171 -2.4346 0.1608 6 7 2.0088 -3.2045 1.2577 7 6 1.5028 -4.4101 1.5847 8 8 0.5565 -4.8576 0.9706 9 6 2.1061 -5.1952 2.7041 10 8 3.0520 -4.7474 3.3183 11 7 1.5996 -6.4006 3.0313 12 6 2.1914 -7.1704 4.1283 13 6 1.4460 -8.4703 4.2889 14 6 0.3550 -8.5409 5.1362 15 6 -0.3313 -9.7319 5.2867 16 6 0.0671 -10.8535 4.5859 17 6 1.1655 -10.7873 3.7389 18 8 1.5632 -11.8895 3.0535 19 6 0.9201 -13.0434 3.3235 20 1 0.1853 -13.0798 4.1141 21 6 1.2022 -14.1832 2.5860 22 7 2.0977 -14.1390 1.6233 23 14 0.3117 -15.7820 2.9606 24 1 -0.9265 -15.8618 2.1448 25 1 1.1955 -16.9295 2.6324 26 1 -0.0416 -15.8258 4.4022 27 6 1.8532 -9.5898 3.5906 28 1 -0.3633 -0.0754 1.0249 29 1 -0.3634 0.9253 -0.4471 30 1 -0.3633 -0.8498 -0.5778 31 1 2.4421 1.6198 -1.0276 32 1 1.6714 2.0648 0.5138 33 1 3.2129 1.1749 0.5139 34 1 3.2360 -1.1380 -0.1140 35 1 1.4845 -3.0083 -0.7635 36 1 0.3705 -2.2284 0.3850 37 1 2.7655 -2.8469 1.7483 38 1 0.8433 -6.7583 2.5405 39 1 2.1240 -6.5967 5.0525 40 1 3.2380 -7.3767 3.9041 41 1 0.0384 -7.6639 5.6813 42 1 -1.1825 -9.7840 5.9493 43 1 -0.4724 -11.7822 4.6999 44 1 2.2948 -14.9362 1.1072 45 1 2.7052 -9.5340 2.9292 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001322769411.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:27:34 Heat of formation + Delta-G solvation = -63.214267 kcal Electronic energy + Delta-G solvation = -26392.292410 eV Core-core repulsion = 22375.834889 eV Total energy + Delta-G solvation = -4016.457521 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.70718 -39.25748 -38.63097 -37.39131 -36.85934 -35.07130 -34.19099 -32.34533 -30.90631 -29.66254 -29.17901 -28.24146 -26.69924 -25.42897 -24.80703 -22.91929 -21.73188 -20.88095 -20.54741 -19.25659 -18.07538 -17.58461 -17.06721 -16.92376 -16.26797 -15.88086 -15.48218 -15.28789 -15.12482 -14.73010 -14.46631 -14.43942 -14.22506 -14.13126 -13.71664 -13.59935 -13.48011 -12.90624 -12.87908 -12.68702 -12.45639 -12.43551 -12.21104 -12.05325 -11.78443 -11.68602 -11.39757 -11.38408 -10.96358 -10.84648 -10.70858 -10.47215 -9.83903 -9.58909 -9.44708 -9.21176 -9.13823 -8.89686 -8.27331 -7.34482 -6.49735 -4.09144 1.34937 1.44100 1.82367 2.24901 2.55838 3.10393 3.11123 3.14948 3.16032 3.69668 3.92295 4.22912 4.39247 4.43985 4.54937 4.76551 4.87495 4.95385 5.04681 5.05655 5.09915 5.20049 5.24423 5.34598 5.37486 5.48929 5.52481 5.56338 5.67118 5.76240 5.84679 5.92540 6.05857 6.12677 6.20180 6.24034 6.37058 6.52425 6.79398 6.85159 6.98415 7.14534 7.24737 7.31029 7.34515 7.65645 7.69130 7.93008 7.94164 8.95499 9.63848 10.67945 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.021610 B = 0.001784 C = 0.001730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.384726 B =15695.125983 C =16179.724349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.102 4.102 3 C -0.121 4.121 4 C -0.193 4.193 5 C 0.145 3.855 6 N -0.699 5.699 7 C 0.507 3.493 8 O -0.516 6.516 9 C 0.505 3.495 10 O -0.528 6.528 11 N -0.686 5.686 12 C 0.166 3.834 13 C -0.077 4.077 14 C -0.193 4.193 15 C -0.076 4.076 16 C -0.223 4.223 17 C 0.150 3.850 18 O -0.175 6.175 19 C -0.393 4.393 20 H 0.092 0.908 21 C 0.040 3.960 22 N -0.860 5.860 23 Si 0.941 3.059 24 H -0.273 1.273 25 H -0.277 1.277 26 H -0.267 1.267 27 C -0.168 4.168 28 H 0.072 0.928 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.119 0.881 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.413 0.587 38 H 0.416 0.584 39 H 0.079 0.921 40 H 0.080 0.920 41 H 0.108 0.892 42 H 0.110 0.890 43 H 0.128 0.872 44 H 0.271 0.729 45 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.811 25.324 -0.668 25.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.103 4.103 3 C -0.178 4.178 4 C -0.212 4.212 5 C 0.022 3.978 6 N -0.352 5.352 7 C 0.287 3.713 8 O -0.392 6.392 9 C 0.285 3.715 10 O -0.405 6.405 11 N -0.339 5.339 12 C 0.044 3.956 13 C -0.078 4.078 14 C -0.213 4.213 15 C -0.094 4.094 16 C -0.243 4.243 17 C 0.096 3.904 18 O -0.078 6.078 19 C -0.469 4.469 20 H 0.110 0.890 21 C -0.165 4.165 22 N -0.494 5.494 23 Si 0.766 3.234 24 H -0.198 1.198 25 H -0.202 1.202 26 H -0.192 1.192 27 C -0.188 4.188 28 H 0.090 0.910 29 H 0.085 0.915 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.137 0.863 35 H 0.097 0.903 36 H 0.099 0.901 37 H 0.249 0.751 38 H 0.253 0.747 39 H 0.097 0.903 40 H 0.098 0.902 41 H 0.126 0.874 42 H 0.128 0.872 43 H 0.146 0.854 44 H 0.081 0.919 45 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -1.533 25.090 -1.020 25.157 hybrid contribution -0.463 -0.894 0.137 1.016 sum -1.997 24.196 -0.883 24.294 Atomic orbital electron populations 1.20995 0.92101 1.02890 1.02661 1.21751 0.96063 0.95074 0.97401 1.20890 0.99874 0.94660 1.02357 1.22621 1.00239 0.92905 1.05416 1.20466 0.97270 0.90015 0.90012 1.45718 1.35848 1.18117 1.35559 1.20243 0.84002 0.82308 0.84708 1.90794 1.26817 1.69074 1.52470 1.20019 0.84162 0.82752 0.84568 1.90752 1.27217 1.69544 1.52994 1.45990 1.35223 1.17464 1.35199 1.20317 0.96925 0.89126 0.89217 1.19198 0.96917 0.93094 0.98601 1.20475 0.98833 0.97878 1.04095 1.20747 0.98310 0.92554 0.97799 1.21265 1.00385 0.99864 1.02761 1.19323 0.91840 0.88137 0.91126 1.83994 1.54459 1.14127 1.55267 1.21324 1.22778 0.84283 1.18554 0.89032 1.25301 0.96841 0.99038 0.95279 1.70032 1.30086 1.29976 1.19349 0.85704 0.78840 0.79818 0.79036 1.19839 1.20215 1.19157 1.20076 1.02978 0.91013 1.04771 0.90975 0.91464 0.91096 0.91227 0.91412 0.91525 0.86329 0.90346 0.90068 0.75054 0.74694 0.90260 0.90161 0.87420 0.87192 0.85391 0.91924 0.86305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.70 8.90 36.01 0.32 -0.38 16 2 C -0.10 -0.60 6.05 -101.06 -0.61 -1.21 16 3 C -0.12 -0.54 10.01 36.01 0.36 -0.18 16 4 C -0.19 -1.27 9.21 -36.02 -0.33 -1.60 16 5 C 0.14 1.21 5.68 -5.20 -0.03 1.18 16 6 N -0.70 -6.88 5.54 -61.91 -0.34 -7.22 16 7 C 0.51 6.48 7.89 -11.58 -0.09 6.39 16 8 O -0.52 -7.81 16.48 5.49 0.09 -7.72 16 9 C 0.50 6.93 7.89 -11.59 -0.09 6.84 16 10 O -0.53 -7.97 16.48 5.50 0.09 -7.88 16 11 N -0.69 -9.50 5.54 -61.91 -0.34 -9.84 16 12 C 0.17 2.36 5.80 -5.19 -0.03 2.33 16 13 C -0.08 -1.30 5.25 -104.65 -0.55 -1.85 16 14 C -0.19 -3.15 9.70 -39.54 -0.38 -3.53 16 15 C -0.08 -1.32 10.04 -39.61 -0.40 -1.72 16 16 C -0.22 -4.67 9.14 -39.39 -0.36 -5.03 16 17 C 0.15 3.50 6.65 -39.11 -0.26 3.24 16 18 O -0.18 -4.90 9.76 0.06 0.00 -4.90 16 19 C -0.39 -10.79 9.45 30.89 0.29 -10.50 16 20 H 0.09 2.31 5.28 -52.49 -0.28 2.04 16 21 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 22 N -0.86 -24.94 13.67 55.48 0.76 -24.18 16 23 Si 0.94 20.22 29.55 -169.99 -5.02 15.20 16 24 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 25 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 26 H -0.27 -5.51 7.11 56.52 0.40 -5.10 16 27 C -0.17 -3.40 9.65 -39.40 -0.38 -3.78 16 28 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.07 0.29 8.10 -51.93 -0.42 -0.13 16 30 H 0.07 0.40 6.72 -51.93 -0.35 0.05 16 31 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.07 0.26 8.12 -51.93 -0.42 -0.16 16 33 H 0.07 0.28 8.06 -51.93 -0.42 -0.14 16 34 H 0.12 0.69 8.05 -52.48 -0.42 0.26 16 35 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.08 0.69 5.83 -51.93 -0.30 0.38 16 37 H 0.41 3.58 7.94 -40.82 -0.32 3.25 16 38 H 0.42 5.81 7.94 -40.82 -0.32 5.49 16 39 H 0.08 1.04 8.08 -51.93 -0.42 0.62 16 40 H 0.08 1.15 8.09 -51.93 -0.42 0.73 16 41 H 0.11 1.49 8.06 -52.48 -0.42 1.06 16 42 H 0.11 1.61 8.06 -52.49 -0.42 1.18 16 43 H 0.13 2.68 5.70 -52.49 -0.30 2.38 16 44 H 0.27 7.20 8.31 -40.82 -0.34 6.87 16 45 H 0.12 2.36 8.06 -52.49 -0.42 1.93 16 LS Contribution 389.92 15.07 5.88 5.88 Total: -1.00 -31.83 389.92 -7.60 -39.43 By element: Atomic # 1 Polarization: 16.13 SS G_CDS: -6.07 Total: 10.06 kcal Atomic # 6 Polarization: -6.18 SS G_CDS: -2.64 Total: -8.82 kcal Atomic # 7 Polarization: -41.32 SS G_CDS: 0.07 Total: -41.24 kcal Atomic # 8 Polarization: -20.68 SS G_CDS: 0.18 Total: -20.50 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.20 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -31.83 -7.60 -39.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322769411.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.785 kcal (2) G-P(sol) polarization free energy of solvation -31.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds